Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 115.54938 * 2 1 4 4 C 1.53076 * 117.51277 * 214.28333 * 2 1 3 5 5 C 1.53002 * 117.50133 * 145.67168 * 2 1 3 6 6 H 1.08998 * 117.50251 * 215.00244 * 5 2 1 7 7 C 1.50705 * 117.49724 * 0.02562 * 5 2 1 8 8 O 1.20826 * 119.99716 * 359.90865 * 7 5 2 9 9 O 1.34260 * 119.99550 * 179.91203 * 7 5 2 10 10 C 1.35925 * 116.99675 * 185.07845 * 9 7 5 11 11 C 1.38830 * 120.01976 * 255.41892 * 10 9 7 12 12 C 1.38197 * 120.08002 * 180.25823 * 11 10 9 13 13 C 1.38156 * 120.12127 * 359.48574 * 12 11 10 14 14 C 1.38892 * 120.04119 * 0.23750 * 13 12 11 15 15 O 1.35751 * 120.04011 * 179.97438 * 14 13 12 16 16 C 1.34832 * 117.00098 * 174.28134 * 15 14 13 17 17 H 1.07992 * 119.99720 * 354.56189 * 16 15 14 18 18 C 1.38654 * 119.99821 * 174.57256 * 16 15 14 19 19 N 1.31557 * 120.00366 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99918 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47210 * 89.99903 * 20 18 16 22 22 H 1.48501 * 109.47341 * 210.00270 * 20 18 16 23 23 H 1.48504 * 109.46878 * 330.00059 * 20 18 16 24 24 C 1.38570 * 120.02389 * 75.14053 * 10 9 7 25 25 H 1.09002 * 109.47068 * 274.32726 * 1 2 3 26 26 H 1.08992 * 109.47588 * 34.32847 * 1 2 3 27 27 H 1.09000 * 109.47123 * 154.33153 * 1 2 3 28 28 H 1.08999 * 109.47150 * 205.67186 * 3 2 1 29 29 H 1.08998 * 109.47488 * 325.66993 * 3 2 1 30 30 H 1.09001 * 109.46804 * 85.67568 * 3 2 1 31 31 H 1.09001 * 117.49747 * 145.03684 * 4 2 1 32 32 H 1.09000 * 117.51650 * 359.97438 * 4 2 1 33 33 H 1.07995 * 119.96394 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.93778 * 179.76458 * 12 11 10 35 35 H 1.08000 * 119.97256 * 180.25173 * 13 12 11 36 36 H 0.96990 * 120.00444 * 180.02562 * 19 18 16 37 37 H 1.08005 * 120.05725 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1713 -0.8747 1.2689 7 6 1.3720 -2.1405 1.4610 8 8 0.1683 -2.0528 1.4026 9 8 1.9395 -3.1464 2.1457 10 6 1.1068 -4.0899 2.6596 11 6 0.8270 -4.1029 4.0194 12 6 -0.0151 -5.0649 4.5440 13 6 -0.5895 -6.0098 3.7159 14 6 -0.3176 -5.9980 2.3539 15 8 -0.8815 -6.9268 1.5402 16 6 -0.6718 -6.7883 0.2155 17 1 -0.1529 -5.9193 -0.1611 18 6 -1.1226 -7.7616 -0.6632 19 7 -1.7544 -8.8204 -0.2044 20 14 -0.8327 -7.5694 -2.4985 21 1 0.4645 -8.1938 -2.8629 22 1 -1.9298 -8.2355 -3.2454 23 1 -0.8022 -6.1260 -2.8464 24 6 0.5322 -5.0358 1.8258 25 1 -0.3633 0.0775 1.0248 26 1 -0.3634 0.8486 -0.5795 27 1 -0.3633 -0.9263 -0.4451 28 1 3.1821 1.3087 -0.4452 29 1 1.5809 2.0742 -0.5795 30 1 2.2766 1.7416 1.0248 31 1 3.1723 -0.8760 -1.2678 32 1 1.6123 -1.8600 -1.2675 33 1 1.2710 -3.3628 4.6685 34 1 -0.2282 -5.0752 5.6027 35 1 -1.2504 -6.7580 4.1278 36 1 -2.0694 -9.5013 -0.8190 37 1 0.7449 -5.0242 0.7670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = -54.005423 kcal Electronic energy + Delta-G solvation = -21022.155607 eV Core-core repulsion = 17731.788231 eV Total energy + Delta-G solvation = -3290.367376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04820 -39.17842 -38.23391 -36.49458 -35.65517 -32.32281 -30.15483 -29.46286 -28.86884 -27.58585 -25.59580 -25.00748 -22.29428 -21.61366 -20.47352 -19.19796 -18.32861 -17.86885 -16.99920 -16.02639 -15.67703 -15.15557 -14.77651 -14.40346 -14.23279 -14.11429 -13.76444 -13.60641 -13.31558 -13.00568 -12.66018 -12.63177 -12.16961 -12.00338 -11.85206 -11.54081 -11.38967 -11.32481 -11.06742 -10.83051 -10.50738 -10.42716 -10.29867 -10.17779 -9.84234 -9.55129 -8.88677 -8.16496 -7.36344 -6.49811 -4.09257 1.75013 2.20597 2.25331 3.01148 3.11110 3.12075 3.16409 3.54795 3.93174 4.39876 4.43318 4.54977 4.66057 4.88392 5.03280 5.04771 5.19200 5.38397 5.46224 5.52820 5.59581 5.73088 5.75762 5.79329 5.84241 5.92004 5.99494 6.04186 6.15980 6.29804 6.45483 6.55356 6.91748 6.99896 7.08651 7.12870 7.31112 7.59844 7.93891 8.20838 8.95289 9.61817 10.67757 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.005715 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.916248 B = 4898.378195 C = 6390.166738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.144 4.144 5 C -0.162 4.162 6 H 0.134 0.866 7 C 0.483 3.517 8 O -0.479 6.479 9 O -0.295 6.295 10 C 0.123 3.877 11 C -0.210 4.210 12 C -0.065 4.065 13 C -0.187 4.187 14 C 0.164 3.836 15 O -0.171 6.171 16 C -0.393 4.393 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.859 5.859 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.234 4.234 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.271 0.729 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 15.764 0.687 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.173 4.173 4 C -0.180 4.180 5 C -0.181 4.181 6 H 0.152 0.848 7 C 0.326 3.674 8 O -0.364 6.364 9 O -0.210 6.210 10 C 0.082 3.918 11 C -0.230 4.230 12 C -0.083 4.083 13 C -0.206 4.206 14 C 0.110 3.890 15 O -0.074 6.074 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.764 3.236 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.253 4.253 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.398 15.363 0.621 17.062 hybrid contribution 0.300 -0.083 -0.829 0.885 sum 7.697 15.280 -0.208 17.110 Atomic orbital electron populations 1.21446 0.90408 1.02006 1.02868 1.21739 0.96232 0.90634 1.00692 1.21403 1.00039 0.93453 1.02364 1.23362 1.03195 1.01311 0.90176 1.21871 1.01775 0.98742 0.95712 0.84832 1.22881 0.87648 0.80518 0.76353 1.90715 1.15724 1.73169 1.56742 1.84488 1.39605 1.32911 1.64014 1.18224 0.93394 0.88315 0.91819 1.20525 1.05301 1.03644 0.93514 1.20493 0.95481 0.93713 0.98620 1.20327 1.06253 1.02902 0.91103 1.19118 0.90299 0.88776 0.90814 1.84013 1.62539 1.42821 1.17983 1.21299 1.39634 1.07627 0.78311 0.89270 1.25282 0.96072 0.94549 1.00375 1.70028 1.34636 1.08903 1.35819 0.85726 0.78469 0.78950 0.80431 1.19732 1.20068 1.19155 1.21181 1.03677 0.99742 1.00732 0.91258 0.92797 0.91360 0.92075 0.91402 0.91811 0.87181 0.87740 0.86809 0.85987 0.85859 0.91883 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 8.09 37.15 0.30 -1.09 16 2 C -0.09 -1.01 2.70 -154.47 -0.42 -1.43 16 3 C -0.12 -0.90 9.85 37.16 0.37 -0.54 16 4 C -0.14 -1.55 9.53 -26.69 -0.25 -1.81 16 5 C -0.16 -2.00 6.02 -91.76 -0.55 -2.56 16 6 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 7 C 0.48 8.31 7.55 36.01 0.27 8.58 16 8 O -0.48 -9.53 12.71 -18.75 -0.24 -9.77 16 9 O -0.29 -5.53 10.03 -23.61 -0.24 -5.77 16 10 C 0.12 2.58 5.10 -39.24 -0.20 2.38 16 11 C -0.21 -3.99 9.99 -39.38 -0.39 -4.38 16 12 C -0.06 -1.19 10.03 -39.63 -0.40 -1.59 16 13 C -0.19 -4.00 9.99 -39.37 -0.39 -4.40 16 14 C 0.16 4.11 6.64 -39.13 -0.26 3.85 16 15 O -0.17 -4.95 9.76 0.04 0.00 -4.95 16 16 C -0.39 -11.22 9.44 30.89 0.29 -10.92 16 17 H 0.09 2.42 5.29 -52.49 -0.28 2.14 16 18 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 19 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 20 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 C -0.23 -5.51 8.73 -39.25 -0.34 -5.86 16 25 H 0.07 0.97 7.26 -51.93 -0.38 0.59 16 26 H 0.05 0.56 7.92 -51.93 -0.41 0.14 16 27 H 0.07 1.01 7.02 -51.93 -0.36 0.64 16 28 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 29 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.90 8.05 -51.93 -0.42 0.48 16 32 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 37 H 0.13 3.15 5.71 -52.48 -0.30 2.85 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -32.22 320.11 -6.63 -38.85 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.64 Total: 4.22 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.08 Total: -18.67 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.76 Total: -24.49 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.47 Total: -20.49 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.22 -6.63 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.153 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds