Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 115.54938 * 2 1 4 4 C 1.53076 * 117.51277 * 214.28333 * 2 1 3 5 5 C 1.53002 * 117.50133 * 145.67168 * 2 1 3 6 6 H 1.08998 * 117.50251 * 215.00244 * 5 2 1 7 7 C 1.50705 * 117.49724 * 0.02562 * 5 2 1 8 8 O 1.20826 * 119.99716 * 359.90865 * 7 5 2 9 9 O 1.34260 * 119.99550 * 179.91203 * 7 5 2 10 10 C 1.35925 * 116.99675 * 185.07845 * 9 7 5 11 11 C 1.38830 * 120.01976 * 255.41892 * 10 9 7 12 12 C 1.38197 * 120.08002 * 180.25823 * 11 10 9 13 13 C 1.38156 * 120.12127 * 359.48574 * 12 11 10 14 14 C 1.38892 * 120.04119 * 0.23750 * 13 12 11 15 15 O 1.35751 * 120.04011 * 179.97438 * 14 13 12 16 16 C 1.34832 * 117.00098 * 174.28134 * 15 14 13 17 17 H 1.07992 * 119.99720 * 354.56189 * 16 15 14 18 18 C 1.38654 * 119.99821 * 174.57256 * 16 15 14 19 19 N 1.31557 * 120.00366 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99918 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47210 * 89.99903 * 20 18 16 22 22 H 1.48501 * 109.47341 * 210.00270 * 20 18 16 23 23 H 1.48504 * 109.46878 * 330.00059 * 20 18 16 24 24 C 1.38570 * 120.02389 * 75.14053 * 10 9 7 25 25 H 1.09002 * 109.47068 * 274.32726 * 1 2 3 26 26 H 1.08992 * 109.47588 * 34.32847 * 1 2 3 27 27 H 1.09000 * 109.47123 * 154.33153 * 1 2 3 28 28 H 1.08999 * 109.47150 * 205.67186 * 3 2 1 29 29 H 1.08998 * 109.47488 * 325.66993 * 3 2 1 30 30 H 1.09001 * 109.46804 * 85.67568 * 3 2 1 31 31 H 1.09001 * 117.49747 * 145.03684 * 4 2 1 32 32 H 1.09000 * 117.51650 * 359.97438 * 4 2 1 33 33 H 1.07995 * 119.96394 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.93778 * 179.76458 * 12 11 10 35 35 H 1.08000 * 119.97256 * 180.25173 * 13 12 11 36 36 H 0.96990 * 120.00444 * 180.02562 * 19 18 16 37 37 H 1.08005 * 120.05725 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1713 -0.8747 1.2689 7 6 1.3720 -2.1405 1.4610 8 8 0.1683 -2.0528 1.4026 9 8 1.9395 -3.1464 2.1457 10 6 1.1068 -4.0899 2.6596 11 6 0.8270 -4.1029 4.0194 12 6 -0.0151 -5.0649 4.5440 13 6 -0.5895 -6.0098 3.7159 14 6 -0.3176 -5.9980 2.3539 15 8 -0.8815 -6.9268 1.5402 16 6 -0.6718 -6.7883 0.2155 17 1 -0.1529 -5.9193 -0.1611 18 6 -1.1226 -7.7616 -0.6632 19 7 -1.7544 -8.8204 -0.2044 20 14 -0.8327 -7.5694 -2.4985 21 1 0.4645 -8.1938 -2.8629 22 1 -1.9298 -8.2355 -3.2454 23 1 -0.8022 -6.1260 -2.8464 24 6 0.5322 -5.0358 1.8258 25 1 -0.3633 0.0775 1.0248 26 1 -0.3634 0.8486 -0.5795 27 1 -0.3633 -0.9263 -0.4451 28 1 3.1821 1.3087 -0.4452 29 1 1.5809 2.0742 -0.5795 30 1 2.2766 1.7416 1.0248 31 1 3.1723 -0.8760 -1.2678 32 1 1.6123 -1.8600 -1.2675 33 1 1.2710 -3.3628 4.6685 34 1 -0.2282 -5.0752 5.6027 35 1 -1.2504 -6.7580 4.1278 36 1 -2.0694 -9.5013 -0.8190 37 1 0.7449 -5.0242 0.7670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = -72.413196 kcal Electronic energy + Delta-G solvation = -21022.953828 eV Core-core repulsion = 17731.788231 eV Total energy + Delta-G solvation = -3291.165597 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48636 -40.77642 -39.63919 -38.00188 -37.25568 -34.37946 -31.61040 -30.84070 -30.37143 -28.40682 -27.54352 -26.36286 -23.79126 -23.29265 -21.85036 -20.18731 -20.15915 -19.58627 -18.43632 -17.63715 -17.22729 -16.92433 -16.10750 -16.07960 -15.72078 -15.47695 -15.29724 -14.78463 -14.67482 -14.50258 -14.17259 -13.75080 -13.58562 -13.21767 -13.07548 -12.99212 -12.79592 -12.77330 -12.52322 -12.26114 -12.20560 -11.93008 -11.65050 -11.37838 -11.33992 -10.89455 -10.77668 -9.84195 -9.20119 -8.56371 -6.26097 0.09390 0.50621 0.92489 1.28004 1.36936 1.45531 1.66039 2.10440 2.59398 2.69067 3.02139 3.32318 3.46344 3.55996 3.67072 3.93376 3.98146 4.09544 4.14321 4.27637 4.48963 4.56028 4.73788 4.76025 4.77707 4.87987 4.92102 4.97233 4.98438 5.04323 5.06942 5.25485 5.34066 5.38495 5.44023 5.48285 5.53620 5.90229 5.96531 6.73681 6.87141 7.61877 8.65974 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.005715 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.916248 B = 4898.378195 C = 6390.166738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.110 4.110 4 C -0.137 4.137 5 C -0.172 4.172 6 H 0.166 0.834 7 C 0.476 3.524 8 O -0.514 6.514 9 O -0.295 6.295 10 C 0.115 3.885 11 C -0.193 4.193 12 C -0.046 4.046 13 C -0.194 4.194 14 C 0.129 3.871 15 O -0.219 6.219 16 C -0.419 4.419 17 H 0.088 0.912 18 C -0.014 4.014 19 N -0.911 5.911 20 Si 1.014 2.986 21 H -0.257 1.257 22 H -0.263 1.263 23 H -0.261 1.261 24 C -0.251 4.251 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.132 0.868 36 H 0.276 0.724 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 18.614 1.174 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.167 4.167 4 C -0.174 4.174 5 C -0.190 4.190 6 H 0.183 0.817 7 C 0.322 3.678 8 O -0.400 6.400 9 O -0.211 6.211 10 C 0.074 3.926 11 C -0.212 4.212 12 C -0.064 4.064 13 C -0.213 4.213 14 C 0.077 3.923 15 O -0.126 6.126 16 C -0.495 4.495 17 H 0.106 0.894 18 C -0.213 4.213 19 N -0.548 5.548 20 Si 0.833 3.167 21 H -0.182 1.182 22 H -0.187 1.187 23 H -0.185 1.185 24 C -0.271 4.271 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.099 0.901 33 H 0.172 0.828 34 H 0.194 0.806 35 H 0.150 0.850 36 H 0.086 0.914 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.504 18.251 1.146 20.609 hybrid contribution -0.292 -0.772 -0.732 1.103 sum 9.212 17.479 0.414 19.762 Atomic orbital electron populations 1.21395 0.92322 1.01298 1.01745 1.21895 0.94983 0.92224 0.99466 1.21437 1.00935 0.91050 1.03274 1.23513 1.04401 1.00570 0.88933 1.22130 1.02434 0.98058 0.96388 0.81669 1.23977 0.88025 0.80368 0.75471 1.90710 1.17536 1.73958 1.57832 1.84516 1.39253 1.32857 1.64431 1.18430 0.93205 0.88313 0.92676 1.21112 1.03589 1.03624 0.92839 1.21083 0.93256 0.91381 1.00695 1.20712 1.06578 1.04068 0.89982 1.19699 0.91397 0.89034 0.92128 1.83966 1.65146 1.45064 1.18380 1.21652 1.40529 1.08324 0.79006 0.89420 1.26529 0.95339 0.93818 1.05586 1.70147 1.36638 1.10185 1.37878 0.84669 0.79174 0.79302 0.73575 1.18203 1.18716 1.18477 1.21155 1.04803 1.00866 1.00280 0.93100 0.90408 0.94628 0.89960 0.90394 0.91154 0.83487 0.90103 0.82821 0.80621 0.84963 0.91432 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.76 8.09 71.98 0.58 -2.17 16 2 C -0.09 -1.67 2.70 -52.16 -0.14 -1.81 16 3 C -0.11 -1.28 9.85 71.98 0.71 -0.57 16 4 C -0.14 -2.70 9.53 30.62 0.29 -2.40 16 5 C -0.17 -3.89 6.02 -11.54 -0.07 -3.96 16 6 H 0.17 2.68 8.14 -2.39 -0.02 2.66 16 7 C 0.48 16.26 7.55 71.24 0.54 16.80 16 8 O -0.51 -21.02 12.71 21.96 0.28 -20.74 16 9 O -0.30 -10.88 10.03 4.57 0.05 -10.83 16 10 C 0.11 4.78 5.10 22.49 0.11 4.89 16 11 C -0.19 -6.74 9.99 22.40 0.22 -6.52 16 12 C -0.05 -1.56 10.03 22.24 0.22 -1.34 16 13 C -0.19 -8.33 9.99 22.41 0.22 -8.11 16 14 C 0.13 6.75 6.64 22.56 0.15 6.90 16 15 O -0.22 -13.64 9.76 -22.77 -0.22 -13.86 16 16 C -0.42 -25.57 9.44 67.92 0.64 -24.93 16 17 H 0.09 5.14 5.29 -2.91 -0.02 5.12 16 18 C -0.01 -0.81 5.49 84.83 0.47 -0.34 16 19 N -0.91 -56.28 13.67 21.61 0.30 -55.99 16 20 Si 1.01 44.06 29.55 68.60 2.03 46.09 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 C -0.25 -12.41 8.73 22.48 0.20 -12.22 16 25 H 0.05 1.44 7.26 -2.39 -0.02 1.42 16 26 H 0.08 1.51 7.92 -2.39 -0.02 1.49 16 27 H 0.03 1.09 7.02 -2.39 -0.02 1.08 16 28 H 0.08 0.65 7.90 -2.39 -0.02 0.63 16 29 H 0.08 0.78 7.92 -2.39 -0.02 0.76 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.15 1.80 8.05 -2.39 -0.02 1.78 16 32 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 33 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.18 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.13 5.33 8.06 -2.91 -0.02 5.31 16 36 H 0.28 15.51 8.31 -92.72 -0.77 14.74 16 37 H 0.11 5.73 5.71 -2.91 -0.02 5.71 16 Total: -1.00 -77.08 320.11 7.66 -69.43 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 1.08 Total: 21.67 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 4.15 Total: -35.77 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.30 Total: -55.99 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: 0.10 Total: -45.43 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -77.08 7.66 -69.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.984 kcal (2) G-P(sol) polarization free energy of solvation -77.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds