Wall clock time and date at job start Mon Mar 30 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47269 * 2 1 4 4 C 1.50706 * 109.46868 * 239.99788 * 2 1 3 5 5 O 1.20830 * 119.99841 * 239.99637 * 4 2 1 6 6 O 1.34267 * 120.00106 * 60.00396 * 4 2 1 7 7 C 1.35921 * 116.99734 * 175.01075 * 6 4 2 8 8 C 1.38827 * 120.01991 * 255.01766 * 7 6 4 9 9 C 1.38187 * 120.08165 * 179.72301 * 8 7 6 10 10 C 1.38154 * 120.12098 * 0.55230 * 9 8 7 11 11 C 1.38894 * 120.04323 * 359.72616 * 10 9 8 12 12 O 1.35747 * 120.04096 * 179.97438 * 11 10 9 13 13 C 1.34834 * 116.99872 * 185.61586 * 12 11 10 14 14 H 1.07993 * 120.00090 * 354.93801 * 13 12 11 15 15 C 1.38655 * 119.99592 * 174.93899 * 13 12 11 16 16 N 1.31554 * 120.00346 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99704 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46974 * 90.00042 * 17 15 13 19 19 H 1.48498 * 109.47196 * 210.00093 * 17 15 13 20 20 H 1.48500 * 109.47193 * 330.00170 * 17 15 13 21 21 C 1.38569 * 120.02173 * 75.29135 * 7 6 4 22 22 C 1.53001 * 109.47114 * 119.99924 * 2 1 3 23 23 C 1.52997 * 117.49906 * 299.99894 * 22 2 1 24 24 C 1.52998 * 60.03396 * 252.50042 * 23 22 2 25 25 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47385 * 300.00058 * 1 2 3 27 27 H 1.09000 * 109.47220 * 60.00581 * 1 2 3 28 28 H 1.08000 * 119.95774 * 359.97438 * 8 7 6 29 29 H 1.07999 * 119.94047 * 180.25471 * 9 8 7 30 30 H 1.08000 * 119.97831 * 179.69838 * 10 9 8 31 31 H 0.97007 * 120.00211 * 179.97438 * 16 15 13 32 32 H 1.08003 * 120.06096 * 359.97438 * 21 7 6 33 33 H 1.09003 * 115.54941 * 85.66946 * 22 2 1 34 34 H 1.09003 * 117.49676 * 0.02562 * 23 22 2 35 35 H 1.08997 * 117.50088 * 144.99556 * 23 22 2 36 36 H 1.08997 * 117.50349 * 107.50138 * 24 23 22 37 37 H 1.08999 * 117.49723 * 252.52270 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7270 -1.6929 -1.1196 6 8 1.7079 -0.2518 -2.4500 7 6 2.2775 -0.8750 -3.5152 8 6 3.3096 -0.2590 -4.2100 9 6 3.8934 -0.8939 -5.2896 10 6 3.4445 -2.1382 -5.6880 11 6 2.4084 -2.7567 -5.0002 12 8 1.9669 -3.9791 -5.3920 13 6 0.8844 -4.4716 -4.7566 14 1 0.4588 -3.9363 -3.9208 15 6 0.3176 -5.6653 -5.1765 16 7 0.8363 -6.3177 -6.1943 17 14 -1.1818 -6.3480 -4.2958 18 1 -2.4140 -5.8244 -4.9381 19 1 -1.1720 -7.8306 -4.3785 20 1 -1.1511 -5.9315 -2.8708 21 6 1.8246 -2.1230 -3.9119 22 6 2.0400 -0.7212 1.2493 23 6 1.6357 -0.1495 2.6096 24 6 3.0744 0.0054 2.1125 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 3.6593 0.7159 -3.9038 29 1 4.6989 -0.4144 -5.8259 30 1 3.8992 -2.6302 -6.5351 31 1 0.4400 -7.1531 -6.4878 32 1 1.0191 -2.6020 -3.3750 33 1 2.1267 -1.8045 1.1642 34 1 1.0061 0.7403 2.6145 35 1 1.4564 -0.8565 3.4195 36 1 3.3916 0.9972 1.7904 37 1 3.8415 -0.6001 2.5952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:52 Heat of formation + Delta-G solvation = -57.697324 kcal Electronic energy + Delta-G solvation = -20889.874685 eV Core-core repulsion = 17599.347216 eV Total energy + Delta-G solvation = -3290.527469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98996 -38.97598 -38.02520 -36.68475 -35.68474 -32.53421 -32.28494 -29.66240 -28.88642 -25.60911 -25.31819 -23.39406 -22.47128 -21.73304 -20.98826 -19.74016 -18.28645 -17.83292 -17.35854 -16.18814 -15.90427 -15.13744 -15.09836 -14.73660 -14.30062 -14.29752 -13.72633 -13.56069 -13.24051 -13.05375 -12.65753 -12.30503 -12.24531 -11.85985 -11.65352 -11.51472 -11.33269 -11.14121 -11.05045 -10.84392 -10.58659 -10.49780 -10.30853 -10.25797 -10.14793 -9.52529 -8.87889 -8.16135 -7.35545 -6.48662 -4.08000 1.76977 2.21191 2.37400 3.02748 3.12306 3.13146 3.17513 3.62671 3.94297 4.35308 4.44052 4.64071 4.72165 4.84801 5.03046 5.04250 5.16181 5.18998 5.28966 5.41127 5.55314 5.60144 5.66321 5.73877 5.78640 5.90650 5.99231 6.00919 6.11495 6.16260 6.35009 6.55993 6.90751 7.00537 7.08991 7.13700 7.32925 7.60043 7.95059 8.18357 8.96457 9.62793 10.68857 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.005244 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.931992 B = 5337.688090 C = 6658.536906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 H 0.107 0.893 4 C 0.457 3.543 5 O -0.480 6.480 6 O -0.296 6.296 7 C 0.120 3.880 8 C -0.213 4.213 9 C -0.065 4.065 10 C -0.187 4.187 11 C 0.164 3.836 12 O -0.170 6.170 13 C -0.393 4.393 14 H 0.091 0.909 15 C 0.042 3.958 16 N -0.860 5.860 17 Si 0.940 3.060 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.267 1.267 21 C -0.230 4.230 22 C -0.145 4.145 23 C -0.173 4.173 24 C -0.177 4.177 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.271 0.729 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 13.349 12.695 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 H 0.125 0.875 4 C 0.300 3.700 5 O -0.364 6.364 6 O -0.211 6.211 7 C 0.080 3.920 8 C -0.232 4.232 9 C -0.083 4.083 10 C -0.207 4.207 11 C 0.109 3.891 12 O -0.073 6.073 13 C -0.469 4.469 14 H 0.108 0.892 15 C -0.163 4.163 16 N -0.494 5.494 17 Si 0.765 3.235 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.192 1.192 21 C -0.250 4.250 22 C -0.163 4.163 23 C -0.209 4.209 24 C -0.214 4.214 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.492 12.614 12.413 17.704 hybrid contribution -0.700 -0.422 0.420 0.919 sum -0.208 12.192 12.833 17.703 Atomic orbital electron populations 1.21775 0.91598 1.03514 1.03277 1.20535 0.98210 0.99705 0.88143 0.87483 1.23890 0.78097 0.83440 0.84586 1.90713 1.34410 1.24756 1.86517 1.84499 1.64560 1.58154 1.13928 1.18224 0.94506 0.92483 0.86812 1.20496 0.99401 1.01809 1.01502 1.20484 0.98223 0.93964 0.95654 1.20328 1.00715 0.96562 1.03062 1.19123 0.92613 0.85937 0.91386 1.83997 1.42536 1.25006 1.55806 1.21320 1.04880 1.06483 1.14223 0.89186 1.25284 0.98975 0.95580 0.96450 1.70034 1.39521 1.15641 1.24223 0.85717 0.80042 0.78400 0.79356 1.19719 1.20097 1.19161 1.21200 1.05823 0.95934 1.01994 1.22146 1.04042 1.00453 0.89649 1.22975 0.98100 1.03203 0.96667 1.23054 0.92642 1.01875 1.03784 0.91655 0.91007 0.90900 0.86796 0.85990 0.85874 0.91900 0.85092 0.86270 0.88544 0.88482 0.88700 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.97 37.16 0.33 -1.12 16 2 C -0.05 -0.55 2.98 -91.77 -0.27 -0.82 16 3 H 0.11 1.02 7.90 -51.93 -0.41 0.61 16 4 C 0.46 7.74 7.12 36.01 0.26 8.00 16 5 O -0.48 -9.89 15.08 -18.75 -0.28 -10.17 16 6 O -0.30 -5.39 9.93 -23.61 -0.23 -5.63 16 7 C 0.12 2.51 5.18 -39.24 -0.20 2.30 16 8 C -0.21 -3.98 9.99 -39.38 -0.39 -4.37 16 9 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 10 C -0.19 -4.02 9.99 -39.37 -0.39 -4.42 16 11 C 0.16 4.12 6.65 -39.13 -0.26 3.86 16 12 O -0.17 -4.97 9.76 0.04 0.00 -4.97 16 13 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 14 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 15 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 16 N -0.86 -25.36 13.67 55.48 0.76 -24.61 16 17 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 C -0.23 -5.44 8.58 -39.25 -0.34 -5.78 16 22 C -0.14 -1.62 4.76 -90.58 -0.43 -2.05 16 23 C -0.17 -1.42 9.73 -26.73 -0.26 -1.68 16 24 C -0.18 -1.64 10.18 -26.69 -0.27 -1.91 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.54 7.29 -51.93 -0.38 0.16 16 27 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 28 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 31 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.13 3.20 5.64 -52.48 -0.30 2.90 16 33 H 0.12 1.59 7.47 -51.93 -0.39 1.21 16 34 H 0.10 0.66 7.61 -51.93 -0.39 0.27 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 322.63 15.07 4.86 4.86 Total: -1.00 -32.71 322.63 -7.01 -39.71 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.65 Total: 4.43 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -2.44 Total: -19.50 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.76 Total: -24.61 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.52 Total: -20.77 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.71 -7.01 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.985 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds