Wall clock time and date at job start Mon Mar 30 2020 02:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47269 * 2 1 4 4 C 1.50706 * 109.46868 * 239.99788 * 2 1 3 5 5 O 1.20830 * 119.99841 * 239.99637 * 4 2 1 6 6 O 1.34267 * 120.00106 * 60.00396 * 4 2 1 7 7 C 1.35921 * 116.99734 * 175.01075 * 6 4 2 8 8 C 1.38827 * 120.01991 * 255.01766 * 7 6 4 9 9 C 1.38187 * 120.08165 * 179.72301 * 8 7 6 10 10 C 1.38154 * 120.12098 * 0.55230 * 9 8 7 11 11 C 1.38894 * 120.04323 * 359.72616 * 10 9 8 12 12 O 1.35747 * 120.04096 * 179.97438 * 11 10 9 13 13 C 1.34834 * 116.99872 * 185.61586 * 12 11 10 14 14 H 1.07993 * 120.00090 * 354.93801 * 13 12 11 15 15 C 1.38655 * 119.99592 * 174.93899 * 13 12 11 16 16 N 1.31554 * 120.00346 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99704 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46974 * 90.00042 * 17 15 13 19 19 H 1.48498 * 109.47196 * 210.00093 * 17 15 13 20 20 H 1.48500 * 109.47193 * 330.00170 * 17 15 13 21 21 C 1.38569 * 120.02173 * 75.29135 * 7 6 4 22 22 C 1.53001 * 109.47114 * 119.99924 * 2 1 3 23 23 C 1.52997 * 117.49906 * 299.99894 * 22 2 1 24 24 C 1.52998 * 60.03396 * 252.50042 * 23 22 2 25 25 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47385 * 300.00058 * 1 2 3 27 27 H 1.09000 * 109.47220 * 60.00581 * 1 2 3 28 28 H 1.08000 * 119.95774 * 359.97438 * 8 7 6 29 29 H 1.07999 * 119.94047 * 180.25471 * 9 8 7 30 30 H 1.08000 * 119.97831 * 179.69838 * 10 9 8 31 31 H 0.97007 * 120.00211 * 179.97438 * 16 15 13 32 32 H 1.08003 * 120.06096 * 359.97438 * 21 7 6 33 33 H 1.09003 * 115.54941 * 85.66946 * 22 2 1 34 34 H 1.09003 * 117.49676 * 0.02562 * 23 22 2 35 35 H 1.08997 * 117.50088 * 144.99556 * 23 22 2 36 36 H 1.08997 * 117.50349 * 107.50138 * 24 23 22 37 37 H 1.08999 * 117.49723 * 252.52270 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7270 -1.6929 -1.1196 6 8 1.7079 -0.2518 -2.4500 7 6 2.2775 -0.8750 -3.5152 8 6 3.3096 -0.2590 -4.2100 9 6 3.8934 -0.8939 -5.2896 10 6 3.4445 -2.1382 -5.6880 11 6 2.4084 -2.7567 -5.0002 12 8 1.9669 -3.9791 -5.3920 13 6 0.8844 -4.4716 -4.7566 14 1 0.4588 -3.9363 -3.9208 15 6 0.3176 -5.6653 -5.1765 16 7 0.8363 -6.3177 -6.1943 17 14 -1.1818 -6.3480 -4.2958 18 1 -2.4140 -5.8244 -4.9381 19 1 -1.1720 -7.8306 -4.3785 20 1 -1.1511 -5.9315 -2.8708 21 6 1.8246 -2.1230 -3.9119 22 6 2.0400 -0.7212 1.2493 23 6 1.6357 -0.1495 2.6096 24 6 3.0744 0.0054 2.1125 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 3.6593 0.7159 -3.9038 29 1 4.6989 -0.4144 -5.8259 30 1 3.8992 -2.6302 -6.5351 31 1 0.4400 -7.1531 -6.4878 32 1 1.0191 -2.6020 -3.3750 33 1 2.1267 -1.8045 1.1642 34 1 1.0061 0.7403 2.6145 35 1 1.4564 -0.8565 3.4195 36 1 3.3916 0.9972 1.7904 37 1 3.8415 -0.6001 2.5952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:51 Heat of formation + Delta-G solvation = -76.485818 kcal Electronic energy + Delta-G solvation = -20890.689415 eV Core-core repulsion = 17599.347216 eV Total energy + Delta-G solvation = -3291.342199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.44860 -40.68097 -39.24838 -38.07461 -37.32392 -34.37827 -33.43415 -31.32899 -30.62810 -27.51788 -26.47805 -24.73539 -23.45707 -23.14612 -22.44126 -20.80841 -20.13947 -19.52326 -18.66106 -17.86250 -17.35731 -16.90280 -16.28940 -16.06759 -15.96119 -15.66345 -15.42548 -14.96410 -14.64559 -14.55490 -14.01444 -13.74242 -13.27537 -13.23564 -13.09445 -12.97376 -12.78592 -12.54544 -12.31114 -12.20994 -12.00143 -11.92325 -11.69915 -11.46400 -11.29386 -10.96573 -10.88108 -9.83260 -9.18904 -8.55938 -6.25576 0.11604 0.51830 1.02444 1.28125 1.37251 1.45657 1.68680 2.10796 2.69544 2.86847 3.02563 3.33903 3.47338 3.57639 3.89946 3.96423 4.04903 4.14296 4.18019 4.28821 4.34495 4.42390 4.50750 4.69041 4.79420 4.85323 4.89784 4.95348 4.98605 5.02873 5.22104 5.26045 5.28595 5.34217 5.41413 5.48513 5.52481 5.91057 5.97524 6.72106 6.87633 7.62617 8.66428 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.005244 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.931992 B = 5337.688090 C = 6658.536906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 H 0.141 0.859 4 C 0.454 3.546 5 O -0.525 6.525 6 O -0.292 6.292 7 C 0.112 3.888 8 C -0.192 4.192 9 C -0.047 4.047 10 C -0.195 4.195 11 C 0.127 3.873 12 O -0.221 6.221 13 C -0.420 4.420 14 H 0.090 0.910 15 C -0.015 4.015 16 N -0.912 5.912 17 Si 1.015 2.985 18 H -0.256 1.256 19 H -0.263 1.263 20 H -0.262 1.262 21 C -0.249 4.249 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.176 4.176 25 H 0.045 0.955 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.131 0.869 31 H 0.276 0.724 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 16.739 14.543 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 H 0.159 0.841 4 C 0.299 3.701 5 O -0.411 6.411 6 O -0.207 6.207 7 C 0.071 3.929 8 C -0.211 4.211 9 C -0.065 4.065 10 C -0.215 4.215 11 C 0.076 3.924 12 O -0.127 6.127 13 C -0.496 4.496 14 H 0.107 0.893 15 C -0.213 4.213 16 N -0.549 5.549 17 Si 0.834 3.166 18 H -0.181 1.181 19 H -0.188 1.188 20 H -0.186 1.186 21 C -0.269 4.269 22 C -0.193 4.193 23 C -0.183 4.183 24 C -0.213 4.213 25 H 0.064 0.936 26 H 0.125 0.875 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.195 0.805 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.533 16.065 14.277 21.498 hybrid contribution -0.518 -1.190 -0.081 1.301 sum 0.015 14.874 14.196 20.561 Atomic orbital electron populations 1.21826 0.90286 1.02846 1.05012 1.20745 0.99060 1.00439 0.85134 0.84146 1.25158 0.76933 0.82994 0.85031 1.90701 1.36692 1.26891 1.86825 1.84534 1.64649 1.57522 1.14024 1.18453 0.94943 0.91607 0.87927 1.21111 0.97043 1.02926 0.99988 1.21092 0.98342 0.92119 0.94907 1.20718 0.99697 0.97906 1.03130 1.19720 0.94190 0.85727 0.92791 1.83952 1.43769 1.27365 1.57593 1.21686 1.05663 1.07414 1.14840 0.89305 1.26537 1.02210 0.95366 0.97222 1.70154 1.41800 1.16570 1.26399 0.84658 0.75845 0.78021 0.78113 1.18096 1.18756 1.18582 1.21175 1.06055 0.97601 1.02099 1.22031 1.07259 0.98871 0.91112 1.23107 0.97470 1.03515 0.94213 1.23181 0.93137 1.02141 1.02841 0.93572 0.87469 0.90917 0.82395 0.80543 0.85072 0.91457 0.87435 0.89723 0.86045 0.87881 0.87065 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.97 71.98 0.65 -1.91 16 2 C -0.04 -0.75 2.98 -11.54 -0.03 -0.78 16 3 H 0.14 2.08 7.90 -2.39 -0.02 2.06 16 4 C 0.45 15.18 7.12 71.24 0.51 15.68 16 5 O -0.52 -22.26 15.08 21.95 0.33 -21.93 16 6 O -0.29 -10.36 9.93 4.55 0.05 -10.32 16 7 C 0.11 4.59 5.18 22.49 0.12 4.71 16 8 C -0.19 -6.52 9.99 22.40 0.22 -6.30 16 9 C -0.05 -1.55 10.03 22.24 0.22 -1.33 16 10 C -0.20 -8.38 9.99 22.41 0.22 -8.15 16 11 C 0.13 6.69 6.65 22.56 0.15 6.84 16 12 O -0.22 -13.81 9.76 -22.76 -0.22 -14.03 16 13 C -0.42 -25.83 9.49 67.92 0.64 -25.19 16 14 H 0.09 5.24 5.20 -2.91 -0.02 5.22 16 15 C -0.01 -0.86 5.49 84.83 0.47 -0.40 16 16 N -0.91 -56.69 13.67 21.61 0.30 -56.39 16 17 Si 1.01 44.47 29.55 68.60 2.03 46.50 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 C -0.25 -12.38 8.58 22.48 0.19 -12.19 16 22 C -0.17 -3.67 4.76 -10.77 -0.05 -3.73 16 23 C -0.15 -1.94 9.73 30.59 0.30 -1.64 16 24 C -0.18 -2.82 10.18 30.62 0.31 -2.51 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.11 1.18 7.29 -2.39 -0.02 1.16 16 27 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 28 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.13 5.31 8.06 -2.91 -0.02 5.28 16 31 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 32 H 0.11 5.70 5.64 -2.91 -0.02 5.69 16 33 H 0.08 2.37 7.47 -2.39 -0.02 2.35 16 34 H 0.12 1.04 7.61 -2.39 -0.02 1.02 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.42 8.05 -2.39 -0.02 1.40 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -78.76 322.63 7.47 -71.29 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 1.08 Total: 21.77 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 3.92 Total: -36.90 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.30 Total: -56.39 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: 0.15 Total: -46.27 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -78.76 7.47 -71.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.197 kcal (2) G-P(sol) polarization free energy of solvation -78.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds