Wall clock time and date at job start Mon Mar 30 2020 02:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46842 * 2 1 4 4 C 1.50700 * 109.46876 * 119.99318 * 2 1 3 5 5 O 1.20827 * 120.00004 * 120.00317 * 4 2 1 6 6 O 1.34266 * 120.00167 * 300.00147 * 4 2 1 7 7 C 1.35925 * 116.99817 * 175.00748 * 6 4 2 8 8 C 1.38821 * 120.02246 * 255.02291 * 7 6 4 9 9 C 1.38198 * 120.07998 * 179.72526 * 8 7 6 10 10 C 1.38153 * 120.12183 * 0.54850 * 9 8 7 11 11 C 1.38894 * 120.04125 * 359.73125 * 10 9 8 12 12 O 1.35754 * 120.03964 * 179.97438 * 11 10 9 13 13 C 1.34831 * 116.99860 * 185.61513 * 12 11 10 14 14 H 1.08006 * 120.00423 * 354.93929 * 13 12 11 15 15 C 1.38655 * 120.00110 * 174.94205 * 13 12 11 16 16 N 1.31557 * 119.99871 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00177 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47254 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46932 * 119.99683 * 17 15 13 20 20 H 1.48491 * 109.47426 * 239.99822 * 17 15 13 21 21 C 1.38575 * 120.01577 * 75.30046 * 7 6 4 22 22 C 1.52997 * 109.47412 * 239.99391 * 2 1 3 23 23 C 1.53003 * 117.49909 * 179.97438 * 22 2 1 24 24 C 1.53004 * 60.00219 * 252.51619 * 23 22 2 25 25 H 1.08996 * 109.46768 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47292 * 300.00542 * 1 2 3 27 27 H 1.09005 * 109.46635 * 60.00309 * 1 2 3 28 28 H 1.08000 * 119.96053 * 0.02562 * 8 7 6 29 29 H 1.07995 * 119.93616 * 180.25396 * 9 8 7 30 30 H 1.08004 * 119.98185 * 179.69928 * 10 9 8 31 31 H 0.96994 * 120.00103 * 180.02562 * 16 15 13 32 32 H 1.07998 * 120.06524 * 359.97438 * 21 7 6 33 33 H 1.08997 * 115.56282 * 325.69246 * 22 2 1 34 34 H 1.08999 * 117.49868 * 145.02521 * 23 22 2 35 35 H 1.08998 * 117.49408 * 0.02562 * 23 22 2 36 36 H 1.08997 * 117.50209 * 107.49063 * 24 23 22 37 37 H 1.09003 * 117.49644 * 252.51461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7270 -1.6927 1.1198 6 8 1.7079 -0.2514 2.4500 7 6 2.1054 -0.9961 3.5153 8 6 1.1806 -1.7637 4.2100 9 6 1.5845 -2.5257 5.2899 10 6 2.9073 -2.5173 5.6884 11 6 3.8358 -1.7466 5.0005 12 8 5.1355 -1.7379 5.3924 13 6 5.9607 -0.8815 4.7571 14 1 5.5979 -0.3018 3.9212 15 6 7.2751 -0.7451 5.1769 16 7 7.7169 -1.4508 6.1955 17 14 8.4185 0.4409 4.2963 18 1 7.6836 1.1097 3.1928 19 1 8.9062 1.4633 5.2566 20 1 9.5744 -0.3070 3.7400 21 6 3.4331 -0.9850 3.9121 22 6 2.0401 -0.7214 -1.2491 23 6 3.5552 -0.8276 -1.4344 24 6 2.7416 0.1227 -2.3153 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.1451 -1.7692 3.9033 29 1 0.8638 -3.1252 5.8261 30 1 3.2195 -3.1099 6.5356 31 1 8.6363 -1.3551 6.4894 32 1 4.1532 -0.3853 3.3754 33 1 1.4312 -1.5584 -1.5904 34 1 3.9431 -1.7350 -1.8974 35 1 4.1884 -0.3840 -0.6661 36 1 2.8396 1.1917 -2.1268 37 1 2.5943 -0.1595 -3.3578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:54 Heat of formation + Delta-G solvation = -56.503951 kcal Electronic energy + Delta-G solvation = -21024.862682 eV Core-core repulsion = 17734.386962 eV Total energy + Delta-G solvation = -3290.475720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98455 -38.97875 -37.95621 -36.51612 -35.64896 -32.70428 -32.29709 -29.65756 -28.89502 -25.56351 -25.12295 -23.33999 -22.40205 -21.73452 -21.10732 -19.85856 -18.25777 -17.85336 -16.95071 -16.14993 -15.89032 -15.29399 -15.13164 -14.85519 -14.36902 -14.14763 -13.72362 -13.58182 -13.11599 -12.85930 -12.62379 -12.49865 -12.00700 -11.84769 -11.64510 -11.45952 -11.37122 -11.20805 -11.04943 -10.85270 -10.59304 -10.47557 -10.27479 -10.20878 -10.04019 -9.51291 -8.88342 -8.15431 -7.35248 -6.48839 -4.08041 1.78193 2.21458 2.39588 3.01671 3.12119 3.12269 3.18035 3.83764 3.94000 4.33634 4.47096 4.62138 4.78479 4.91138 5.03615 5.08763 5.09283 5.22735 5.30555 5.52289 5.56197 5.59370 5.70556 5.78751 5.85079 5.92639 6.00094 6.02459 6.12401 6.16732 6.36637 6.56410 6.91790 7.01515 7.09487 7.14161 7.33226 7.60964 7.95101 8.21246 8.96427 9.62978 10.68813 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.005743 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.949189 B = 4874.461062 C = 6413.538201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 H 0.108 0.892 4 C 0.453 3.547 5 O -0.475 6.475 6 O -0.298 6.298 7 C 0.121 3.879 8 C -0.213 4.213 9 C -0.065 4.065 10 C -0.188 4.188 11 C 0.164 3.836 12 O -0.171 6.171 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.041 3.959 16 N -0.860 5.860 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.230 4.230 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.177 4.177 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.270 0.730 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 3.825 -12.489 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 H 0.126 0.874 4 C 0.295 3.705 5 O -0.358 6.358 6 O -0.213 6.213 7 C 0.081 3.919 8 C -0.232 4.232 9 C -0.083 4.083 10 C -0.207 4.207 11 C 0.110 3.890 12 O -0.074 6.074 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.163 4.163 16 N -0.494 5.494 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.250 4.250 22 C -0.163 4.163 23 C -0.195 4.195 24 C -0.214 4.214 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.812 3.353 -12.207 17.314 hybrid contribution 0.686 0.562 -0.404 0.974 sum -11.127 3.915 -12.612 17.268 Atomic orbital electron populations 1.21745 0.91616 1.03075 1.03388 1.20585 0.98166 0.99957 0.88111 0.87438 1.24002 0.78271 0.83705 0.84518 1.90721 1.33408 1.25193 1.86473 1.84505 1.72708 1.50143 1.13983 1.18220 0.92726 0.94156 0.86816 1.20493 0.98702 1.02514 1.01481 1.20485 0.94837 0.97350 0.95667 1.20325 0.92068 1.05230 1.03069 1.19126 0.85897 0.92641 0.91381 1.83997 1.12948 1.54640 1.55814 1.21362 0.91409 1.19859 1.14178 0.89160 1.25287 0.96642 0.97958 0.96454 1.70042 1.16878 1.38317 1.24182 0.85648 0.79640 0.79243 0.78936 1.19115 1.19983 1.19989 1.21196 0.95092 1.06690 1.02001 1.22031 0.96668 1.01957 0.95661 1.22874 0.93163 1.01352 1.02148 1.23094 1.04590 0.97648 0.96104 0.91960 0.90950 0.90912 0.86809 0.86015 0.85894 0.91957 0.85148 0.87126 0.88475 0.88659 0.88689 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.11 37.16 0.34 -0.94 16 2 C -0.05 -0.57 2.98 -91.77 -0.27 -0.85 16 3 H 0.11 1.10 7.90 -51.93 -0.41 0.69 16 4 C 0.45 7.60 6.99 36.01 0.25 7.86 16 5 O -0.47 -9.60 14.51 -18.75 -0.27 -9.87 16 6 O -0.30 -5.43 9.93 -23.62 -0.23 -5.66 16 7 C 0.12 2.52 5.18 -39.24 -0.20 2.32 16 8 C -0.21 -3.96 9.99 -39.38 -0.39 -4.36 16 9 C -0.07 -1.19 10.03 -39.63 -0.40 -1.58 16 10 C -0.19 -4.03 9.99 -39.37 -0.39 -4.42 16 11 C 0.16 4.12 6.65 -39.13 -0.26 3.86 16 12 O -0.17 -4.98 9.76 0.03 0.00 -4.98 16 13 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 14 H 0.09 2.46 5.20 -52.48 -0.27 2.19 16 15 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 16 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 17 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C -0.23 -5.45 8.58 -39.25 -0.34 -5.78 16 22 C -0.14 -1.61 4.73 -90.62 -0.43 -2.04 16 23 C -0.16 -1.94 8.98 -26.73 -0.24 -2.18 16 24 C -0.18 -1.64 10.18 -26.72 -0.27 -1.91 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.13 3.19 5.64 -52.49 -0.30 2.89 16 33 H 0.11 1.16 8.11 -51.93 -0.42 0.74 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 36 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -32.61 323.27 -7.07 -39.67 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.75 Total: 4.60 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.41 Total: -19.92 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.76 Total: -24.60 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.51 Total: -20.51 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.61 -7.07 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.832 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds