Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46842 * 2 1 4 4 C 1.50700 * 109.46876 * 119.99318 * 2 1 3 5 5 O 1.20827 * 120.00004 * 120.00317 * 4 2 1 6 6 O 1.34266 * 120.00167 * 300.00147 * 4 2 1 7 7 C 1.35925 * 116.99817 * 175.00748 * 6 4 2 8 8 C 1.38821 * 120.02246 * 255.02291 * 7 6 4 9 9 C 1.38198 * 120.07998 * 179.72526 * 8 7 6 10 10 C 1.38153 * 120.12183 * 0.54850 * 9 8 7 11 11 C 1.38894 * 120.04125 * 359.73125 * 10 9 8 12 12 O 1.35754 * 120.03964 * 179.97438 * 11 10 9 13 13 C 1.34831 * 116.99860 * 185.61513 * 12 11 10 14 14 H 1.08006 * 120.00423 * 354.93929 * 13 12 11 15 15 C 1.38655 * 120.00110 * 174.94205 * 13 12 11 16 16 N 1.31557 * 119.99871 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00177 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47254 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46932 * 119.99683 * 17 15 13 20 20 H 1.48491 * 109.47426 * 239.99822 * 17 15 13 21 21 C 1.38575 * 120.01577 * 75.30046 * 7 6 4 22 22 C 1.52997 * 109.47412 * 239.99391 * 2 1 3 23 23 C 1.53003 * 117.49909 * 179.97438 * 22 2 1 24 24 C 1.53004 * 60.00219 * 252.51619 * 23 22 2 25 25 H 1.08996 * 109.46768 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47292 * 300.00542 * 1 2 3 27 27 H 1.09005 * 109.46635 * 60.00309 * 1 2 3 28 28 H 1.08000 * 119.96053 * 0.02562 * 8 7 6 29 29 H 1.07995 * 119.93616 * 180.25396 * 9 8 7 30 30 H 1.08004 * 119.98185 * 179.69928 * 10 9 8 31 31 H 0.96994 * 120.00103 * 180.02562 * 16 15 13 32 32 H 1.07998 * 120.06524 * 359.97438 * 21 7 6 33 33 H 1.08997 * 115.56282 * 325.69246 * 22 2 1 34 34 H 1.08999 * 117.49868 * 145.02521 * 23 22 2 35 35 H 1.08998 * 117.49408 * 0.02562 * 23 22 2 36 36 H 1.08997 * 117.50209 * 107.49063 * 24 23 22 37 37 H 1.09003 * 117.49644 * 252.51461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7270 -1.6927 1.1198 6 8 1.7079 -0.2514 2.4500 7 6 2.1054 -0.9961 3.5153 8 6 1.1806 -1.7637 4.2100 9 6 1.5845 -2.5257 5.2899 10 6 2.9073 -2.5173 5.6884 11 6 3.8358 -1.7466 5.0005 12 8 5.1355 -1.7379 5.3924 13 6 5.9607 -0.8815 4.7571 14 1 5.5979 -0.3018 3.9212 15 6 7.2751 -0.7451 5.1769 16 7 7.7169 -1.4508 6.1955 17 14 8.4185 0.4409 4.2963 18 1 7.6836 1.1097 3.1928 19 1 8.9062 1.4633 5.2566 20 1 9.5744 -0.3070 3.7400 21 6 3.4331 -0.9850 3.9121 22 6 2.0401 -0.7214 -1.2491 23 6 3.5552 -0.8276 -1.4344 24 6 2.7416 0.1227 -2.3153 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.1451 -1.7692 3.9033 29 1 0.8638 -3.1252 5.8261 30 1 3.2195 -3.1099 6.5356 31 1 8.6363 -1.3551 6.4894 32 1 4.1532 -0.3853 3.3754 33 1 1.4312 -1.5584 -1.5904 34 1 3.9431 -1.7350 -1.8974 35 1 4.1884 -0.3840 -0.6661 36 1 2.8396 1.1917 -2.1268 37 1 2.5943 -0.1595 -3.3578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -75.111416 kcal Electronic energy + Delta-G solvation = -21025.669563 eV Core-core repulsion = 17734.386962 eV Total energy + Delta-G solvation = -3291.282601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43156 -40.68375 -39.26419 -37.93745 -37.24693 -34.37880 -33.60507 -31.32299 -30.63745 -27.52694 -26.24445 -24.60864 -23.47088 -23.25512 -22.51297 -21.02804 -20.13455 -19.52829 -18.36515 -17.67398 -17.39976 -16.90172 -16.40219 -16.06874 -16.01060 -15.63451 -15.55683 -15.06429 -14.71738 -14.40915 -13.84426 -13.61381 -13.40122 -13.11313 -13.04730 -12.82728 -12.78571 -12.54196 -12.42193 -12.19402 -12.10430 -11.90814 -11.73408 -11.51324 -11.13970 -11.05382 -10.88456 -9.82356 -9.18421 -8.56172 -6.25577 0.12937 0.52182 1.06412 1.27816 1.35982 1.46040 1.69153 2.10273 2.68849 2.90722 3.03548 3.35623 3.44199 3.64559 3.81202 3.96646 4.09205 4.10367 4.18209 4.26973 4.29374 4.45351 4.51148 4.73494 4.77965 4.89072 4.91051 4.97606 4.99192 5.01857 5.15463 5.21762 5.30880 5.35557 5.42090 5.49319 5.53640 5.91204 5.98665 6.76159 6.87602 7.62837 8.66465 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.005743 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.949189 B = 4874.461062 C = 6413.538201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.043 4.043 3 H 0.125 0.875 4 C 0.449 3.551 5 O -0.516 6.516 6 O -0.295 6.295 7 C 0.114 3.886 8 C -0.192 4.192 9 C -0.047 4.047 10 C -0.196 4.196 11 C 0.127 3.873 12 O -0.221 6.221 13 C -0.418 4.418 14 H 0.089 0.911 15 C -0.016 4.016 16 N -0.912 5.912 17 Si 1.015 2.985 18 H -0.260 1.260 19 H -0.259 1.259 20 H -0.264 1.264 21 C -0.249 4.249 22 C -0.150 4.150 23 C -0.192 4.192 24 C -0.142 4.142 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.131 0.869 31 H 0.276 0.724 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.477 4.838 -14.426 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 H 0.143 0.857 4 C 0.294 3.706 5 O -0.401 6.401 6 O -0.211 6.211 7 C 0.073 3.927 8 C -0.210 4.210 9 C -0.065 4.065 10 C -0.215 4.215 11 C 0.076 3.924 12 O -0.127 6.127 13 C -0.494 4.494 14 H 0.107 0.893 15 C -0.214 4.214 16 N -0.549 5.549 17 Si 0.834 3.166 18 H -0.184 1.184 19 H -0.184 1.184 20 H -0.188 1.188 21 C -0.269 4.269 22 C -0.168 4.168 23 C -0.229 4.229 24 C -0.178 4.178 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.176 0.824 29 H 0.194 0.806 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.935 4.371 -14.159 21.039 hybrid contribution 1.314 0.171 0.137 1.332 sum -13.621 4.541 -14.023 20.070 Atomic orbital electron populations 1.21781 0.88970 1.03515 1.05007 1.20840 1.00134 0.99941 0.85264 0.85736 1.25238 0.77126 0.83367 0.84897 1.90713 1.35302 1.27392 1.86727 1.84539 1.72385 1.50015 1.14119 1.18441 0.91939 0.94441 0.87918 1.21102 1.00206 0.99766 0.99964 1.21090 0.94018 0.96445 0.94927 1.20710 0.93080 1.04561 1.03137 1.19723 0.85540 0.94371 0.92796 1.83953 1.14787 1.56390 1.57599 1.21711 0.92336 1.20602 1.14756 0.89337 1.26536 0.97876 0.99759 0.97238 1.70158 1.17702 1.40732 1.26351 0.84595 0.77108 0.76916 0.77962 1.18368 1.18380 1.18834 1.21165 0.96431 1.07228 1.02096 1.22146 0.95483 1.02989 0.96220 1.22817 0.93981 1.02716 1.03427 1.23203 1.00501 0.97691 0.96451 0.92108 0.90792 0.87842 0.82443 0.80596 0.85120 0.91475 0.87527 0.86394 0.88917 0.91524 0.87287 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.11 71.98 0.66 -1.31 16 2 C -0.04 -0.91 2.98 -11.54 -0.03 -0.94 16 3 H 0.12 2.22 7.90 -2.39 -0.02 2.20 16 4 C 0.45 14.82 6.99 71.24 0.50 15.31 16 5 O -0.52 -21.30 14.51 21.96 0.32 -20.98 16 6 O -0.30 -10.45 9.93 4.52 0.04 -10.41 16 7 C 0.11 4.65 5.18 22.49 0.12 4.77 16 8 C -0.19 -6.50 9.99 22.40 0.22 -6.27 16 9 C -0.05 -1.56 10.03 22.24 0.22 -1.34 16 10 C -0.20 -8.39 9.99 22.41 0.22 -8.17 16 11 C 0.13 6.68 6.65 22.56 0.15 6.83 16 12 O -0.22 -13.83 9.76 -22.79 -0.22 -14.05 16 13 C -0.42 -25.69 9.49 67.92 0.64 -25.04 16 14 H 0.09 5.23 5.20 -2.91 -0.02 5.21 16 15 C -0.02 -0.91 5.49 84.83 0.47 -0.45 16 16 N -0.91 -56.69 13.67 21.61 0.30 -56.39 16 17 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 C -0.25 -12.35 8.58 22.49 0.19 -12.16 16 22 C -0.15 -3.03 4.73 -10.79 -0.05 -3.09 16 23 C -0.19 -4.70 8.98 30.60 0.27 -4.42 16 24 C -0.14 -2.21 10.18 30.60 0.31 -1.90 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.07 8.11 -2.39 -0.02 1.05 16 27 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.13 5.29 8.06 -2.91 -0.02 5.27 16 31 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.11 5.66 5.64 -2.91 -0.02 5.64 16 33 H 0.12 2.20 8.11 -2.39 -0.02 2.18 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 36 H 0.11 1.42 8.05 -2.39 -0.02 1.40 16 37 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -78.16 323.27 7.43 -70.73 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 1.07 Total: 22.69 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.89 Total: -38.16 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.30 Total: -56.39 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: 0.14 Total: -45.44 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -78.16 7.43 -70.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.380 kcal (2) G-P(sol) polarization free energy of solvation -78.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds