Wall clock time and date at job start Mon Mar 30 2020 01:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86807 * 119.99643 * 2 1 4 4 H 1.48504 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46917 * 299.99589 * 3 2 1 6 6 H 1.48497 * 109.46996 * 60.00063 * 3 2 1 7 7 C 1.38650 * 120.00526 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00467 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99379 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99719 * 185.54869 * 9 7 2 11 11 C 1.38931 * 120.04124 * 185.94827 * 10 9 7 12 12 C 1.38111 * 120.03958 * 179.97438 * 11 10 9 13 13 C 1.38229 * 120.12585 * 0.02562 * 12 11 10 14 14 C 1.38777 * 120.08154 * 359.97438 * 13 12 11 15 15 O 1.35930 * 120.02013 * 180.27739 * 14 13 12 16 16 C 1.34262 * 116.99633 * 245.70460 * 15 14 13 17 17 O 1.20826 * 120.00561 * 355.08401 * 16 15 14 18 18 C 1.50706 * 119.99773 * 175.08168 * 16 15 14 19 19 C 1.52994 * 109.46968 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46929 * 180.02562 * 19 18 16 21 21 C 1.53005 * 117.50117 * 243.74744 * 20 19 18 22 22 C 1.53003 * 117.50098 * 175.09058 * 20 19 18 23 23 C 1.38611 * 119.95746 * 359.97438 * 14 13 12 24 24 H 0.97002 * 119.99916 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.98029 * 359.97438 * 11 10 9 26 26 H 1.08002 * 119.93971 * 179.97438 * 12 11 10 27 27 H 1.08008 * 119.95851 * 180.02562 * 13 12 11 28 28 H 1.08992 * 109.46971 * 300.00235 * 18 16 15 29 29 H 1.09001 * 109.46874 * 60.00082 * 18 16 15 30 30 H 1.09002 * 109.47552 * 299.99980 * 19 18 16 31 31 H 1.09001 * 109.47160 * 60.00375 * 19 18 16 32 32 H 1.08996 * 115.55215 * 29.42297 * 20 19 18 33 33 H 1.08998 * 117.49627 * 0.02562 * 21 20 19 34 34 H 1.08996 * 117.49644 * 145.01848 * 21 20 19 35 35 H 1.09003 * 117.50059 * 214.98428 * 22 20 19 36 36 H 1.09001 * 117.49421 * 359.97438 * 22 20 19 37 37 H 1.08005 * 120.05884 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.7096 1.3465 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0692 -3.5040 0.1180 11 6 1.4550 -4.7447 0.0014 12 6 2.2023 -5.9000 0.1205 13 6 3.5623 -5.8254 0.3563 14 6 4.1811 -4.5888 0.4736 15 8 5.5195 -4.5168 0.6999 16 6 5.9119 -4.0044 1.8772 17 8 5.0934 -3.5511 2.6417 18 6 7.3733 -3.9947 2.2452 19 6 7.5471 -3.3605 3.6266 20 6 9.0308 -3.3501 3.9999 21 6 9.4599 -4.1774 5.2133 22 6 9.4270 -2.6496 5.3012 23 6 3.4345 -3.4271 0.3537 24 1 -0.4850 0.8401 -0.0004 25 1 0.3925 -4.8058 -0.1824 26 1 1.7231 -6.8637 0.0300 27 1 4.1442 -6.7306 0.4484 28 1 7.7499 -5.0173 2.2644 29 1 7.9298 -3.4163 1.5076 30 1 7.1706 -2.3378 3.6070 31 1 6.9905 -3.9385 4.3644 32 1 9.7258 -3.2869 3.1626 33 1 8.6852 -4.7295 5.7454 34 1 10.4373 -4.6583 5.1743 35 1 10.3828 -2.1259 5.3201 36 1 8.6307 -2.1959 5.8911 37 1 3.9143 -2.4638 0.4451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841346108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:20 Heat of formation + Delta-G solvation = -62.595931 kcal Electronic energy + Delta-G solvation = -20451.058205 eV Core-core repulsion = 17160.318317 eV Total energy + Delta-G solvation = -3290.739888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91942 -38.84893 -37.95120 -36.95006 -35.70214 -32.57078 -32.29224 -29.69461 -28.92648 -25.97093 -25.30173 -22.68969 -22.52044 -21.59756 -20.67479 -20.26916 -18.27978 -17.83721 -16.89746 -16.32707 -15.99864 -15.60825 -15.14130 -14.77154 -14.39490 -14.21256 -13.79663 -13.60927 -13.38759 -12.98359 -12.57716 -12.45815 -11.94891 -11.81129 -11.62322 -11.53798 -11.43681 -11.25613 -11.02350 -10.88685 -10.58944 -10.46367 -10.36360 -10.21696 -10.11040 -9.52999 -8.87206 -8.13075 -7.34469 -6.48137 -4.07126 1.79208 2.22044 2.38999 3.06364 3.12768 3.14378 3.19056 3.55338 3.95013 4.40883 4.48195 4.58528 4.69033 4.80238 4.97177 5.06346 5.12351 5.20683 5.26722 5.40189 5.43533 5.60511 5.65660 5.73621 5.80142 5.85408 5.90400 6.01108 6.13075 6.16463 6.32600 6.57447 6.91178 7.03517 7.09510 7.14855 7.33499 7.61171 7.95706 8.17695 8.97248 9.63715 10.69516 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.004785 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.843103 B = 5849.812653 C = 7539.730291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.171 6.171 10 C 0.164 3.836 11 C -0.189 4.189 12 C -0.065 4.065 13 C -0.213 4.213 14 C 0.119 3.881 15 O -0.297 6.297 16 C 0.449 3.551 17 O -0.482 6.482 18 C -0.105 4.105 19 C -0.081 4.081 20 C -0.153 4.153 21 C -0.182 4.182 22 C -0.180 4.180 23 C -0.231 4.231 24 H 0.270 0.730 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.400 -7.810 5.330 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.074 6.074 10 C 0.109 3.891 11 C -0.209 4.209 12 C -0.083 4.083 13 C -0.232 4.232 14 C 0.079 3.921 15 O -0.213 6.213 16 C 0.291 3.709 17 O -0.366 6.366 18 C -0.143 4.143 19 C -0.119 4.119 20 C -0.171 4.171 21 C -0.219 4.219 22 C -0.217 4.217 23 C -0.250 4.250 24 H 0.080 0.920 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.684 -7.417 5.539 18.212 hybrid contribution 0.479 0.880 0.017 1.002 sum 16.163 -6.537 5.556 18.299 Atomic orbital electron populations 1.70044 1.05944 1.27692 1.45732 1.25289 0.95863 0.98838 0.96345 0.85647 0.79200 0.80277 0.78339 1.19102 1.19991 1.19986 1.21359 0.91765 0.80767 1.52825 0.89185 1.84013 1.34012 1.11445 1.77899 1.19144 0.89466 0.88338 0.92130 1.20319 1.00355 0.89910 1.10288 1.20477 0.92591 0.97233 0.98007 1.20410 0.94846 0.95101 1.12860 1.18270 0.79861 0.93653 1.00355 1.84520 1.24377 1.75287 1.37099 1.24073 0.92643 0.74966 0.79186 1.90748 1.54963 1.41124 1.49749 1.21350 0.88985 1.04782 0.99168 1.21037 0.93633 1.02361 0.94820 1.22292 0.96882 1.05483 0.92463 1.23076 1.02883 0.93928 1.01978 1.22982 1.03071 0.95036 1.00592 1.21220 0.94798 0.98086 1.10933 0.91957 0.85905 0.85973 0.86691 0.87583 0.87595 0.90288 0.90680 0.87482 0.88677 0.88899 0.88806 0.88612 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.48 13.67 55.48 0.76 -24.73 16 2 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 3 Si 0.94 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.39 -11.29 9.44 30.88 0.29 -11.00 16 8 H 0.09 2.47 5.30 -52.49 -0.28 2.19 16 9 O -0.17 -4.99 9.76 0.02 0.00 -4.99 16 10 C 0.16 4.12 6.64 -39.13 -0.26 3.86 16 11 C -0.19 -4.07 9.99 -39.37 -0.39 -4.46 16 12 C -0.06 -1.17 10.03 -39.63 -0.40 -1.57 16 13 C -0.21 -3.95 9.98 -39.39 -0.39 -4.34 16 14 C 0.12 2.48 5.46 -39.24 -0.21 2.26 16 15 O -0.30 -5.38 10.05 -23.63 -0.24 -5.61 16 16 C 0.45 7.42 7.77 36.01 0.28 7.70 16 17 O -0.48 -9.85 15.05 -18.75 -0.28 -10.13 16 18 C -0.11 -1.12 5.77 -27.88 -0.16 -1.28 16 19 C -0.08 -0.86 4.78 -26.73 -0.13 -0.99 16 20 C -0.15 -1.28 5.73 -90.62 -0.52 -1.80 16 21 C -0.18 -1.40 10.18 -26.69 -0.27 -1.67 16 22 C -0.18 -1.45 10.25 -26.69 -0.27 -1.72 16 23 C -0.23 -5.49 7.99 -39.25 -0.31 -5.80 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 28 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.07 0.86 7.83 -51.93 -0.41 0.45 16 32 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.09 0.74 8.03 -51.93 -0.42 0.33 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.13 3.25 5.72 -52.48 -0.30 2.95 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -33.03 325.18 -7.49 -40.53 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.76 Total: 3.76 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.85 Total: -19.75 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.76 Total: -24.73 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.52 Total: -20.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.03 -7.49 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841346108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.070 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds