Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86807 * 119.99643 * 2 1 4 4 H 1.48504 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46917 * 299.99589 * 3 2 1 6 6 H 1.48497 * 109.46996 * 60.00063 * 3 2 1 7 7 C 1.38650 * 120.00526 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00467 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99379 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99719 * 185.54869 * 9 7 2 11 11 C 1.38931 * 120.04124 * 185.94827 * 10 9 7 12 12 C 1.38111 * 120.03958 * 179.97438 * 11 10 9 13 13 C 1.38229 * 120.12585 * 0.02562 * 12 11 10 14 14 C 1.38777 * 120.08154 * 359.97438 * 13 12 11 15 15 O 1.35930 * 120.02013 * 180.27739 * 14 13 12 16 16 C 1.34262 * 116.99633 * 245.70460 * 15 14 13 17 17 O 1.20826 * 120.00561 * 355.08401 * 16 15 14 18 18 C 1.50706 * 119.99773 * 175.08168 * 16 15 14 19 19 C 1.52994 * 109.46968 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46929 * 180.02562 * 19 18 16 21 21 C 1.53005 * 117.50117 * 243.74744 * 20 19 18 22 22 C 1.53003 * 117.50098 * 175.09058 * 20 19 18 23 23 C 1.38611 * 119.95746 * 359.97438 * 14 13 12 24 24 H 0.97002 * 119.99916 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.98029 * 359.97438 * 11 10 9 26 26 H 1.08002 * 119.93971 * 179.97438 * 12 11 10 27 27 H 1.08008 * 119.95851 * 180.02562 * 13 12 11 28 28 H 1.08992 * 109.46971 * 300.00235 * 18 16 15 29 29 H 1.09001 * 109.46874 * 60.00082 * 18 16 15 30 30 H 1.09002 * 109.47552 * 299.99980 * 19 18 16 31 31 H 1.09001 * 109.47160 * 60.00375 * 19 18 16 32 32 H 1.08996 * 115.55215 * 29.42297 * 20 19 18 33 33 H 1.08998 * 117.49627 * 0.02562 * 21 20 19 34 34 H 1.08996 * 117.49644 * 145.01848 * 21 20 19 35 35 H 1.09003 * 117.50059 * 214.98428 * 22 20 19 36 36 H 1.09001 * 117.49421 * 359.97438 * 22 20 19 37 37 H 1.08005 * 120.05884 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.7096 1.3465 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0692 -3.5040 0.1180 11 6 1.4550 -4.7447 0.0014 12 6 2.2023 -5.9000 0.1205 13 6 3.5623 -5.8254 0.3563 14 6 4.1811 -4.5888 0.4736 15 8 5.5195 -4.5168 0.6999 16 6 5.9119 -4.0044 1.8772 17 8 5.0934 -3.5511 2.6417 18 6 7.3733 -3.9947 2.2452 19 6 7.5471 -3.3605 3.6266 20 6 9.0308 -3.3501 3.9999 21 6 9.4599 -4.1774 5.2133 22 6 9.4270 -2.6496 5.3012 23 6 3.4345 -3.4271 0.3537 24 1 -0.4850 0.8401 -0.0004 25 1 0.3925 -4.8058 -0.1824 26 1 1.7231 -6.8637 0.0300 27 1 4.1442 -6.7306 0.4484 28 1 7.7499 -5.0173 2.2644 29 1 7.9298 -3.4163 1.5076 30 1 7.1706 -2.3378 3.6070 31 1 6.9905 -3.9385 4.3644 32 1 9.7258 -3.2869 3.1626 33 1 8.6852 -4.7295 5.7454 34 1 10.4373 -4.6583 5.1743 35 1 10.3828 -2.1259 5.3201 36 1 8.6307 -2.1959 5.8911 37 1 3.9143 -2.4638 0.4451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841346108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = -81.424478 kcal Electronic energy + Delta-G solvation = -20451.874672 eV Core-core repulsion = 17160.318317 eV Total energy + Delta-G solvation = -3291.556356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.38804 -40.60503 -39.00616 -38.24608 -37.35043 -34.37153 -33.50951 -31.34096 -30.66486 -27.59183 -26.82933 -24.05789 -23.31371 -23.19383 -21.84669 -21.27982 -20.14362 -19.51391 -18.35147 -17.75493 -17.44536 -16.89138 -16.47670 -16.18612 -16.08373 -15.63573 -15.27197 -15.09879 -14.76376 -14.53279 -14.17714 -13.74912 -13.42975 -13.13504 -12.98992 -12.74563 -12.56062 -12.51687 -12.29781 -12.20824 -12.18557 -11.96361 -11.80782 -11.48005 -11.13605 -10.88289 -10.80460 -9.79425 -9.16788 -8.55930 -6.25129 0.14980 0.53767 1.06462 1.27946 1.36505 1.46339 1.73577 2.10698 2.70793 2.91048 3.04438 3.35169 3.54432 3.67608 3.98628 4.00103 4.03253 4.17329 4.21736 4.30190 4.33127 4.48589 4.53388 4.60087 4.82398 4.83683 4.93606 4.96423 4.99230 5.05305 5.07596 5.29470 5.32483 5.40046 5.44481 5.51513 5.56445 5.91585 5.99888 6.73699 6.88038 7.63613 8.66826 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.004785 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.843103 B = 5849.812653 C = 7539.730291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.016 4.016 3 Si 1.015 2.985 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.417 4.417 8 H 0.089 0.911 9 O -0.222 6.222 10 C 0.126 3.874 11 C -0.198 4.198 12 C -0.047 4.047 13 C -0.190 4.190 14 C 0.111 3.889 15 O -0.293 6.293 16 C 0.445 3.555 17 O -0.529 6.529 18 C -0.093 4.093 19 C -0.079 4.079 20 C -0.153 4.153 21 C -0.175 4.175 22 C -0.188 4.188 23 C -0.250 4.250 24 H 0.276 0.724 25 H 0.130 0.870 26 H 0.178 0.822 27 H 0.161 0.839 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.340 -10.045 5.320 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.215 4.215 3 Si 0.834 3.166 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.106 0.894 9 O -0.128 6.128 10 C 0.075 3.925 11 C -0.217 4.217 12 C -0.064 4.064 13 C -0.209 4.209 14 C 0.070 3.930 15 O -0.208 6.208 16 C 0.291 3.709 17 O -0.416 6.416 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.171 4.171 21 C -0.212 4.212 22 C -0.225 4.225 23 C -0.270 4.270 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.195 0.805 27 H 0.179 0.821 28 H 0.160 0.840 29 H 0.151 0.849 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.663 -9.709 5.526 21.751 hybrid contribution -0.316 1.239 0.074 1.281 sum 18.346 -8.470 5.599 20.969 Atomic orbital electron populations 1.70160 1.07783 1.28997 1.48075 1.26540 0.96923 1.02499 0.95492 0.84594 0.77879 0.74967 0.79128 1.18322 1.18298 1.18960 1.21705 0.92013 0.81662 1.53936 0.89361 1.83963 1.35369 1.12447 1.81011 1.19748 0.90346 0.88700 0.93745 1.20713 1.01306 0.89708 1.09976 1.21093 0.92371 0.98093 0.94873 1.21044 0.95336 0.95599 1.08889 1.18505 0.81072 0.93549 0.99908 1.84557 1.22667 1.75413 1.38143 1.25360 0.94602 0.73114 0.77821 1.90744 1.56703 1.43157 1.50969 1.21571 0.84608 1.07337 0.99420 1.20980 0.95287 1.00743 0.94678 1.22255 0.95345 1.06189 0.93322 1.23146 1.03547 0.93547 1.00981 1.23059 1.03386 0.95719 1.00362 1.21179 0.94806 0.98494 1.12512 0.91490 0.85160 0.80508 0.82117 0.84033 0.84945 0.92621 0.92073 0.85486 0.89178 0.87143 0.87465 0.89767 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.01 13.67 21.61 0.30 -56.71 16 2 C -0.02 -0.95 5.49 84.83 0.47 -0.48 16 3 Si 1.02 44.78 29.55 68.60 2.03 46.81 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.42 -25.74 9.44 67.92 0.64 -25.10 16 8 H 0.09 5.23 5.30 -2.91 -0.02 5.22 16 9 O -0.22 -13.90 9.76 -22.83 -0.22 -14.12 16 10 C 0.13 6.62 6.64 22.56 0.15 6.77 16 11 C -0.20 -8.44 9.99 22.41 0.22 -8.22 16 12 C -0.05 -1.52 10.03 22.24 0.22 -1.30 16 13 C -0.19 -6.31 9.98 22.40 0.22 -6.08 16 14 C 0.11 4.49 5.46 22.49 0.12 4.61 16 15 O -0.29 -10.07 10.05 4.49 0.05 -10.03 16 16 C 0.45 14.29 7.77 71.24 0.55 14.84 16 17 O -0.53 -22.11 15.05 21.96 0.33 -21.78 16 18 C -0.09 -1.73 5.77 29.85 0.17 -1.56 16 19 C -0.08 -1.59 4.78 30.59 0.15 -1.45 16 20 C -0.15 -2.19 5.73 -10.79 -0.06 -2.25 16 21 C -0.18 -2.26 10.18 30.62 0.31 -1.95 16 22 C -0.19 -2.73 10.25 30.62 0.31 -2.41 16 23 C -0.25 -12.37 7.99 22.48 0.18 -12.19 16 24 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.13 5.25 8.06 -2.91 -0.02 5.23 16 26 H 0.18 3.90 8.06 -2.91 -0.02 3.88 16 27 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 31 H 0.06 1.38 7.83 -2.39 -0.02 1.36 16 32 H 0.13 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.09 1.25 8.03 -2.39 -0.02 1.23 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 5.64 5.72 -2.91 -0.02 5.62 16 Total: -1.00 -79.15 325.18 7.22 -71.94 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 1.07 Total: 20.66 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 3.67 Total: -36.76 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.30 Total: -56.71 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: 0.15 Total: -45.93 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -79.15 7.22 -71.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841346108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.487 kcal (2) G-P(sol) polarization free energy of solvation -79.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds