Wall clock time and date at job start Mon Mar 30 2020 02:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46859 * 2 1 4 4 C 1.50694 * 109.47246 * 120.00582 * 2 1 3 5 5 H 1.07993 * 120.00318 * 120.00339 * 4 2 1 6 6 C 1.37877 * 119.99758 * 299.99890 * 4 2 1 7 7 N 1.31518 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99983 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47417 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47612 * 119.99726 * 8 6 4 11 11 H 1.48510 * 109.46878 * 239.99797 * 8 6 4 12 12 O 1.45197 * 109.46760 * 240.00460 * 2 1 3 13 13 C 1.34228 * 117.00333 * 89.99885 * 12 2 1 14 14 O 1.20833 * 119.99855 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00531 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.70621 * 54.45782 * 15 13 12 17 17 C 1.53416 * 109.67900 * 293.92291 * 15 13 12 18 18 C 1.53072 * 108.29275 * 175.55750 * 17 15 13 19 19 C 1.50770 * 109.68043 * 48.20656 * 18 17 15 20 20 C 1.38506 * 118.76453 * 162.30233 * 19 18 17 21 21 C 1.38104 * 120.31729 * 179.75691 * 20 19 18 22 22 C 1.38289 * 119.98295 * 0.02562 * 21 20 19 23 23 C 1.37975 * 119.95826 * 0.08203 * 22 21 20 24 24 C 1.38377 * 121.40385 * 342.18726 * 19 18 17 25 25 O 1.35838 * 121.80546 * 0.45548 * 24 19 18 26 26 H 1.08995 * 109.47064 * 299.99489 * 1 2 3 27 27 H 1.08998 * 109.47135 * 59.99923 * 1 2 3 28 28 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99654 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.69597 * 295.25843 * 17 15 13 31 31 H 1.08996 * 109.69820 * 55.85395 * 17 15 13 32 32 H 1.09000 * 109.43483 * 168.27011 * 18 17 15 33 33 H 1.08998 * 109.43670 * 288.14295 * 18 17 15 34 34 H 1.08001 * 119.84191 * 359.78131 * 20 19 18 35 35 H 1.08001 * 120.00948 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.02585 * 180.35770 * 22 21 20 37 37 H 1.08000 * 119.89049 * 179.91245 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.1475 -2.2866 3.6036 10 1 3.1474 -0.1861 4.8160 11 1 1.1678 -1.5869 4.8163 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2812 14 8 1.9973 1.2519 -2.2506 15 6 2.7192 -0.5768 -3.5493 16 1 2.0651 -1.4031 -3.8274 17 6 4.1465 -1.0971 -3.3352 18 6 4.5828 -1.8379 -4.6017 19 6 4.2778 -0.9947 -5.8137 20 6 4.9107 -1.2924 -7.0092 21 6 4.6512 -0.5441 -8.1406 22 6 3.7561 0.5085 -8.0828 23 6 3.1243 0.8111 -6.8941 24 6 3.3832 0.0593 -5.7523 25 8 2.7453 0.3906 -4.5996 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7090 1.1612 3.4845 30 1 4.8187 -0.2595 -3.1494 31 1 4.1652 -1.7794 -2.4855 32 1 5.6541 -2.0337 -4.5563 33 1 4.0447 -2.7831 -4.6726 34 1 5.6102 -2.1138 -7.0569 35 1 5.1473 -0.7808 -9.0703 36 1 3.5483 1.0905 -8.9685 37 1 2.4265 1.6342 -6.8499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842309881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:28 Heat of formation + Delta-G solvation = -123.983968 kcal Electronic energy + Delta-G solvation = -21006.307337 eV Core-core repulsion = 17712.905464 eV Total energy + Delta-G solvation = -3293.401873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14707 -41.02407 -38.58943 -37.55198 -35.58162 -35.22933 -32.33638 -31.41496 -31.15174 -27.82480 -27.46101 -24.88491 -23.94125 -23.42823 -21.90384 -20.93620 -19.20485 -19.05151 -18.25684 -17.80379 -17.55009 -16.80714 -16.52805 -16.11280 -15.71874 -15.33059 -15.04090 -14.84286 -14.55623 -14.31696 -14.17924 -13.88855 -13.46588 -13.26967 -13.09141 -12.88287 -12.84107 -12.45093 -12.43014 -12.27823 -12.14481 -12.04625 -11.68358 -11.54302 -11.24444 -11.03771 -10.63386 -9.72828 -9.17387 -8.31023 -6.48591 0.36926 0.44397 1.08356 1.22210 1.43535 1.44312 1.58706 2.33723 2.55248 2.82802 3.00246 3.38810 3.57978 3.71426 3.78028 3.82674 4.14656 4.22784 4.31831 4.45647 4.49102 4.61048 4.62600 4.73206 4.76595 4.88233 4.94123 4.98994 5.06091 5.13737 5.34500 5.44690 5.52141 5.55800 5.59869 5.82913 5.86550 5.98382 6.35770 6.56071 6.81216 7.22779 8.77299 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039332 B = 0.003755 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.722238 B = 7455.628199 C = 7972.818614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.987 3.013 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.272 1.272 12 O -0.348 6.348 13 C 0.455 3.545 14 O -0.540 6.540 15 C 0.109 3.891 16 H 0.131 0.869 17 C -0.145 4.145 18 C -0.068 4.068 19 C -0.170 4.170 20 C -0.084 4.084 21 C -0.149 4.149 22 C -0.089 4.089 23 C -0.167 4.167 24 C 0.098 3.902 25 O -0.325 6.325 26 H 0.083 0.917 27 H 0.020 0.980 28 H 0.051 0.949 29 H 0.271 0.729 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.374 -7.924 -19.235 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.810 3.190 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.197 1.197 12 O -0.264 6.264 13 C 0.298 3.702 14 O -0.430 6.430 15 C 0.052 3.948 16 H 0.148 0.852 17 C -0.182 4.182 18 C -0.104 4.104 19 C -0.171 4.171 20 C -0.102 4.102 21 C -0.167 4.167 22 C -0.106 4.106 23 C -0.186 4.186 24 C 0.054 3.946 25 O -0.240 6.240 26 H 0.101 0.899 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.171 0.829 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.108 -7.282 -18.990 21.895 hybrid contribution -0.298 0.499 1.146 1.285 sum 7.810 -6.783 -17.844 20.626 Atomic orbital electron populations 1.22019 0.96625 1.00753 1.00849 1.20470 0.92158 0.92192 0.78758 0.97591 1.21315 1.33532 1.14034 0.89474 0.90788 1.25892 0.94673 0.95655 1.02308 1.70037 1.36621 1.23728 1.25275 0.85071 0.78330 0.78423 0.77188 1.18297 1.20273 1.19717 1.86438 1.76077 1.43092 1.20812 1.23643 0.74427 0.85664 0.86450 1.90615 1.48965 1.18573 1.84890 1.21769 1.00872 0.89845 0.82310 0.85165 1.22221 0.91969 1.02180 1.01853 1.20574 1.04407 0.97550 0.87880 1.20160 0.99710 0.98762 0.98428 1.21276 0.98386 0.99762 0.90742 1.21465 0.99448 0.96062 0.99712 1.21262 0.95310 0.97496 0.96580 1.20834 1.04175 1.02330 0.91219 1.19156 0.93787 0.96683 0.84980 1.85963 1.73112 1.42346 1.22611 0.89853 0.96043 0.92992 0.91940 0.91362 0.87133 0.86811 0.87763 0.82638 0.82677 0.82851 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.58 9.33 71.98 0.67 -6.91 16 2 C 0.22 12.08 2.56 29.85 0.08 12.15 16 3 H 0.01 0.39 7.16 -2.39 -0.02 0.38 16 4 C -0.55 -30.70 8.90 25.60 0.23 -30.48 16 5 H 0.07 4.00 7.81 -2.91 -0.02 3.98 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.68 16 8 Si 0.99 42.33 29.54 68.60 2.03 44.35 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 O -0.35 -16.78 9.86 -51.40 -0.51 -17.29 16 13 C 0.45 20.41 7.27 71.24 0.52 20.93 16 14 O -0.54 -28.70 15.74 28.33 0.45 -28.25 16 15 C 0.11 3.62 3.32 29.99 0.10 3.72 16 16 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 17 C -0.14 -3.80 5.47 30.76 0.17 -3.63 16 18 C -0.07 -1.24 5.86 29.89 0.18 -1.07 16 19 C -0.17 -3.74 5.75 -19.75 -0.11 -3.85 16 20 C -0.08 -1.36 9.67 22.30 0.22 -1.14 16 21 C -0.15 -2.22 10.04 22.25 0.22 -1.99 16 22 C -0.09 -1.58 10.04 22.22 0.22 -1.35 16 23 C -0.17 -4.18 9.94 22.42 0.22 -3.95 16 24 C 0.10 2.80 6.47 22.52 0.15 2.95 16 25 O -0.33 -11.64 9.47 -72.81 -0.69 -12.33 16 26 H 0.08 4.66 6.07 -2.39 -0.01 4.65 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -71.61 315.74 5.89 -65.72 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.07 Total: 13.87 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 3.30 Total: -13.38 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.24 Total: -52.68 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -0.75 Total: -57.87 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -71.61 5.89 -65.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842309881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.262 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds