Wall clock time and date at job start Mon Mar 30 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 C 1.50704 * 109.47371 * 180.02562 * 3 2 1 5 5 C 1.33085 * 120.00148 * 125.00146 * 4 3 2 6 6 C 1.46935 * 120.00099 * 179.97438 * 5 4 3 7 7 O 1.21543 * 119.99862 * 0.02562 * 6 5 4 8 8 O 1.34814 * 120.00021 * 179.97438 * 6 5 4 9 9 C 1.35907 * 116.99902 * 175.01359 * 8 6 5 10 10 C 1.38835 * 120.02223 * 255.31541 * 9 8 6 11 11 C 1.38187 * 120.07866 * 179.97438 * 10 9 8 12 12 C 1.38162 * 120.12713 * 359.78189 * 11 10 9 13 13 C 1.38899 * 120.03759 * 0.46588 * 12 11 10 14 14 O 1.35753 * 120.03736 * 179.78710 * 13 12 11 15 15 C 1.34827 * 116.99911 * 174.12836 * 14 13 12 16 16 H 1.07997 * 120.00166 * 5.06975 * 15 14 13 17 17 C 1.38652 * 120.00176 * 185.06247 * 15 14 13 18 18 N 1.31565 * 119.99596 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00417 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47045 * 89.99968 * 19 17 15 21 21 H 1.48496 * 109.47430 * 210.00358 * 19 17 15 22 22 H 1.48505 * 109.46906 * 330.00243 * 19 17 15 23 23 C 1.38583 * 120.02074 * 75.29066 * 9 8 6 24 24 H 1.08998 * 109.46383 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46806 * 299.99343 * 1 2 3 26 26 H 1.09000 * 109.47338 * 59.99525 * 1 2 3 27 27 H 1.09006 * 109.47279 * 240.00891 * 2 1 3 28 28 H 1.08997 * 109.47517 * 119.99726 * 2 1 3 29 29 H 1.09000 * 109.47125 * 60.00385 * 3 2 1 30 30 H 1.09000 * 109.47529 * 300.00357 * 3 2 1 31 31 H 1.08004 * 119.99344 * 305.00220 * 4 3 2 32 32 H 1.07998 * 119.99833 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.96155 * 359.97093 * 10 9 8 34 34 H 1.07995 * 119.93769 * 180.02562 * 11 10 9 35 35 H 1.07997 * 119.98132 * 180.23682 * 12 11 10 36 36 H 0.97000 * 119.99529 * 179.97438 * 18 17 15 37 37 H 1.08008 * 120.06469 * 0.04166 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4427 -0.0006 5 6 4.2120 2.1040 -0.9449 6 6 5.6813 2.1046 -0.9452 7 8 6.2894 1.5007 -0.0833 8 8 6.3550 2.7740 -1.9020 9 6 7.7082 2.8213 -1.7855 10 6 8.3284 3.9881 -1.3594 11 6 9.7042 4.0374 -1.2401 12 6 10.4665 2.9248 -1.5399 13 6 9.8518 1.7564 -1.9715 14 8 10.6012 0.6646 -2.2702 15 6 9.9374 -0.4713 -2.5654 16 1 8.8599 -0.4639 -2.6373 17 6 10.6382 -1.6488 -2.7767 18 7 11.9509 -1.6578 -2.6887 19 14 9.7188 -3.2224 -3.1864 20 1 9.5687 -3.3388 -4.6592 21 1 10.4806 -4.3889 -2.6727 22 1 8.3760 -3.1902 -2.5530 23 6 8.4699 1.7048 -2.0915 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 4.0873 0.9061 0.7653 32 1 3.6716 2.6402 -1.7110 33 1 7.7349 4.8583 -1.1211 34 1 10.1842 4.9460 -0.9080 35 1 11.5413 2.9647 -1.4421 36 1 12.4412 -2.4817 -2.8362 37 1 7.9893 0.7963 -2.4234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842426904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:24 Heat of formation + Delta-G solvation = -74.561269 kcal Electronic energy + Delta-G solvation = -20153.499386 eV Core-core repulsion = 16862.240642 eV Total energy + Delta-G solvation = -3291.258744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75999 -38.79978 -37.28816 -36.19996 -35.63185 -32.65930 -32.28983 -29.78164 -28.93260 -27.58624 -25.42856 -23.93752 -22.01569 -21.63869 -20.89904 -19.59364 -18.28644 -17.95378 -17.21491 -16.06492 -15.84014 -15.28854 -15.11161 -14.44836 -14.34413 -14.18390 -13.92630 -13.65122 -13.46896 -13.10423 -12.77988 -12.64664 -12.09448 -11.88551 -11.65987 -11.56094 -11.50583 -11.29223 -11.06361 -11.04208 -10.85602 -10.48126 -10.35915 -10.26830 -9.64669 -9.51318 -8.86392 -8.15147 -7.34391 -6.47254 -4.06459 1.07327 1.80143 2.22599 3.03432 3.11168 3.13504 3.18321 3.21165 3.95961 4.42659 4.55426 4.59905 4.71419 4.92043 5.01659 5.08269 5.19363 5.21238 5.26686 5.41018 5.46699 5.60664 5.70350 5.76573 5.79435 5.94429 5.99447 6.08604 6.17567 6.19069 6.39620 6.57269 6.91448 7.01433 7.10287 7.15081 7.34485 7.61343 7.96686 8.19352 8.98016 9.64188 10.70323 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.004601 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.349380 B = 6084.542588 C = 7989.150236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.099 4.099 4 C -0.057 4.057 5 C -0.188 4.188 6 C 0.485 3.515 7 O -0.489 6.489 8 O -0.293 6.293 9 C 0.121 3.879 10 C -0.212 4.212 11 C -0.065 4.065 12 C -0.186 4.186 13 C 0.163 3.837 14 O -0.171 6.171 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.041 3.959 18 N -0.860 5.860 19 Si 0.941 3.059 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.229 4.229 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.271 0.729 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.556 6.315 3.783 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.136 4.136 4 C -0.076 4.076 5 C -0.207 4.207 6 C 0.331 3.669 7 O -0.375 6.375 8 O -0.209 6.209 9 C 0.080 3.920 10 C -0.231 4.231 11 C -0.084 4.084 12 C -0.206 4.206 13 C 0.109 3.891 14 O -0.074 6.074 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.163 4.163 18 N -0.495 5.495 19 Si 0.765 3.235 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.192 1.192 23 C -0.249 4.249 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.904 5.889 3.992 19.266 hybrid contribution -0.385 -0.809 -0.274 0.936 sum -18.289 5.081 3.719 19.342 Atomic orbital electron populations 1.21778 0.95387 1.01919 1.01893 1.21502 0.96026 0.95659 1.02965 1.20904 0.90897 0.98215 1.03545 1.23899 0.96359 0.91916 0.95422 1.21926 0.89420 1.06241 1.03118 1.21848 0.89597 0.76421 0.79069 1.90914 1.70289 1.40033 1.36313 1.84583 1.19248 1.68935 1.48098 1.18217 0.78880 0.94547 1.00367 1.20515 0.95025 0.97682 1.09869 1.20487 0.92531 0.97205 0.98162 1.20334 1.00118 0.92037 1.08087 1.19120 0.89172 0.88975 0.91848 1.83995 1.33485 1.15828 1.74055 1.21325 0.92206 0.84217 1.49101 0.89178 1.25285 0.95839 0.98555 0.96639 1.70040 1.05868 1.28416 1.45173 0.85714 0.79072 0.79778 0.78940 1.19740 1.20086 1.19153 1.21218 0.94309 0.99027 1.10342 0.92506 0.92637 0.92588 0.91431 0.91407 0.89661 0.90552 0.85243 0.84326 0.86739 0.85969 0.85852 0.91921 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 3 C -0.10 -0.70 5.67 -27.88 -0.16 -0.86 16 4 C -0.06 -0.60 9.09 -36.10 -0.33 -0.92 16 5 C -0.19 -2.31 9.76 -37.85 -0.37 -2.68 16 6 C 0.48 8.58 7.77 34.25 0.27 8.84 16 7 O -0.49 -10.36 15.69 -19.30 -0.30 -10.67 16 8 O -0.29 -5.57 10.04 -25.02 -0.25 -5.82 16 9 C 0.12 2.57 5.19 -39.23 -0.20 2.36 16 10 C -0.21 -4.02 9.99 -39.38 -0.39 -4.41 16 11 C -0.07 -1.21 10.03 -39.63 -0.40 -1.61 16 12 C -0.19 -4.03 9.99 -39.36 -0.39 -4.43 16 13 C 0.16 4.14 6.65 -39.13 -0.26 3.88 16 14 O -0.17 -5.00 9.76 0.05 0.00 -5.00 16 15 C -0.39 -11.38 9.49 30.89 0.29 -11.08 16 16 H 0.09 2.49 5.20 -52.49 -0.27 2.21 16 17 C 0.04 1.17 5.49 -17.51 -0.10 1.07 16 18 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 19 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 23 C -0.23 -5.51 8.59 -39.25 -0.34 -5.85 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.48 7.82 -51.93 -0.41 0.07 16 31 H 0.13 1.50 7.49 -52.48 -0.39 1.10 16 32 H 0.14 1.32 7.87 -52.49 -0.41 0.91 16 33 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.13 3.26 5.64 -52.48 -0.30 2.96 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -33.29 328.92 -6.75 -40.04 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.72 Total: 2.45 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.17 Total: -17.25 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.76 Total: -24.80 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.55 Total: -21.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.29 -6.75 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842426904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.524 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds