Wall clock time and date at job start Mon Mar 30 2020 01:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 C 1.50704 * 109.47371 * 180.02562 * 3 2 1 5 5 C 1.33085 * 120.00148 * 125.00146 * 4 3 2 6 6 C 1.46935 * 120.00099 * 179.97438 * 5 4 3 7 7 O 1.21543 * 119.99862 * 0.02562 * 6 5 4 8 8 O 1.34814 * 120.00021 * 179.97438 * 6 5 4 9 9 C 1.35907 * 116.99902 * 175.01359 * 8 6 5 10 10 C 1.38835 * 120.02223 * 255.31541 * 9 8 6 11 11 C 1.38187 * 120.07866 * 179.97438 * 10 9 8 12 12 C 1.38162 * 120.12713 * 359.78189 * 11 10 9 13 13 C 1.38899 * 120.03759 * 0.46588 * 12 11 10 14 14 O 1.35753 * 120.03736 * 179.78710 * 13 12 11 15 15 C 1.34827 * 116.99911 * 174.12836 * 14 13 12 16 16 H 1.07997 * 120.00166 * 5.06975 * 15 14 13 17 17 C 1.38652 * 120.00176 * 185.06247 * 15 14 13 18 18 N 1.31565 * 119.99596 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00417 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47045 * 89.99968 * 19 17 15 21 21 H 1.48496 * 109.47430 * 210.00358 * 19 17 15 22 22 H 1.48505 * 109.46906 * 330.00243 * 19 17 15 23 23 C 1.38583 * 120.02074 * 75.29066 * 9 8 6 24 24 H 1.08998 * 109.46383 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46806 * 299.99343 * 1 2 3 26 26 H 1.09000 * 109.47338 * 59.99525 * 1 2 3 27 27 H 1.09006 * 109.47279 * 240.00891 * 2 1 3 28 28 H 1.08997 * 109.47517 * 119.99726 * 2 1 3 29 29 H 1.09000 * 109.47125 * 60.00385 * 3 2 1 30 30 H 1.09000 * 109.47529 * 300.00357 * 3 2 1 31 31 H 1.08004 * 119.99344 * 305.00220 * 4 3 2 32 32 H 1.07998 * 119.99833 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.96155 * 359.97093 * 10 9 8 34 34 H 1.07995 * 119.93769 * 180.02562 * 11 10 9 35 35 H 1.07997 * 119.98132 * 180.23682 * 12 11 10 36 36 H 0.97000 * 119.99529 * 179.97438 * 18 17 15 37 37 H 1.08008 * 120.06469 * 0.04166 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4427 -0.0006 5 6 4.2120 2.1040 -0.9449 6 6 5.6813 2.1046 -0.9452 7 8 6.2894 1.5007 -0.0833 8 8 6.3550 2.7740 -1.9020 9 6 7.7082 2.8213 -1.7855 10 6 8.3284 3.9881 -1.3594 11 6 9.7042 4.0374 -1.2401 12 6 10.4665 2.9248 -1.5399 13 6 9.8518 1.7564 -1.9715 14 8 10.6012 0.6646 -2.2702 15 6 9.9374 -0.4713 -2.5654 16 1 8.8599 -0.4639 -2.6373 17 6 10.6382 -1.6488 -2.7767 18 7 11.9509 -1.6578 -2.6887 19 14 9.7188 -3.2224 -3.1864 20 1 9.5687 -3.3388 -4.6592 21 1 10.4806 -4.3889 -2.6727 22 1 8.3760 -3.1902 -2.5530 23 6 8.4699 1.7048 -2.0915 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 4.0873 0.9061 0.7653 32 1 3.6716 2.6402 -1.7110 33 1 7.7349 4.8583 -1.1211 34 1 10.1842 4.9460 -0.9080 35 1 11.5413 2.9647 -1.4421 36 1 12.4412 -2.4817 -2.8362 37 1 7.9893 0.7963 -2.4234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842426904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:23 Heat of formation + Delta-G solvation = -93.764907 kcal Electronic energy + Delta-G solvation = -20154.332119 eV Core-core repulsion = 16862.240642 eV Total energy + Delta-G solvation = -3292.091477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28566 -40.60039 -38.81928 -37.44698 -36.92380 -34.37378 -33.47349 -31.44022 -30.68804 -28.45040 -27.46120 -25.20469 -23.51670 -22.91898 -22.04677 -20.66040 -20.13946 -19.62945 -18.65406 -17.72248 -17.38995 -16.90402 -16.20802 -15.97146 -15.90862 -15.66886 -15.24443 -15.04491 -14.70182 -14.52491 -14.19051 -13.76772 -13.54942 -13.19345 -13.04152 -12.78844 -12.71483 -12.58104 -12.39470 -12.20961 -12.10813 -11.94702 -11.82673 -11.57234 -11.47066 -10.88521 -10.54530 -9.84234 -9.19428 -8.56064 -6.25558 -0.03527 0.14771 0.51521 1.27843 1.37073 1.45595 1.75681 1.82410 2.10948 2.70369 3.02500 3.34755 3.55158 3.92824 3.95804 4.03598 4.15748 4.16860 4.21000 4.28580 4.50040 4.60036 4.64654 4.71801 4.87492 4.90160 4.96558 4.98509 5.16316 5.19405 5.33170 5.37244 5.40289 5.41344 5.46795 5.47454 5.51392 5.91099 5.97340 6.70907 6.87592 7.62367 8.66332 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.004601 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.349380 B = 6084.542588 C = 7989.150236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.093 4.093 4 C -0.029 4.029 5 C -0.206 4.206 6 C 0.480 3.520 7 O -0.536 6.536 8 O -0.292 6.292 9 C 0.111 3.889 10 C -0.191 4.191 11 C -0.047 4.047 12 C -0.193 4.193 13 C 0.126 3.874 14 O -0.219 6.219 15 C -0.420 4.420 16 H 0.089 0.911 17 C -0.015 4.015 18 N -0.912 5.912 19 Si 1.015 2.985 20 H -0.256 1.256 21 H -0.262 1.262 22 H -0.263 1.263 23 C -0.249 4.249 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.178 0.822 35 H 0.133 0.867 36 H 0.276 0.724 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.466 8.190 4.304 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.130 4.130 4 C -0.048 4.048 5 C -0.224 4.224 6 C 0.330 3.670 7 O -0.426 6.426 8 O -0.207 6.207 9 C 0.070 3.930 10 C -0.210 4.210 11 C -0.064 4.064 12 C -0.212 4.212 13 C 0.075 3.925 14 O -0.126 6.126 15 C -0.496 4.496 16 H 0.106 0.894 17 C -0.214 4.214 18 N -0.549 5.549 19 Si 0.834 3.166 20 H -0.181 1.181 21 H -0.186 1.186 22 H -0.187 1.187 23 C -0.269 4.269 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.189 0.811 33 H 0.175 0.825 34 H 0.195 0.805 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.851 7.821 4.512 22.722 hybrid contribution 0.347 -1.110 -0.294 1.199 sum -20.504 6.711 4.218 21.983 Atomic orbital electron populations 1.21759 0.94133 1.02208 1.02639 1.21518 0.97096 0.95435 1.02360 1.20997 0.87897 0.98627 1.05459 1.24196 0.98318 0.88930 0.93339 1.22026 0.85937 1.08985 1.05461 1.22906 0.91433 0.74933 0.77762 1.90896 1.71474 1.42146 1.38121 1.84602 1.17989 1.69193 1.48920 1.18453 0.80050 0.94504 0.99989 1.21125 0.95746 0.97744 1.06369 1.21097 0.92199 0.97697 0.95449 1.20731 1.01172 0.91803 1.07536 1.19715 0.89994 0.89367 0.93383 1.83952 1.34787 1.16885 1.76932 1.21680 0.92470 0.85164 1.50267 0.89390 1.26538 0.96848 1.01930 0.96054 1.70157 1.07663 1.29741 1.47369 0.84656 0.77635 0.74885 0.79436 1.18081 1.18637 1.18740 1.21189 0.94312 0.99567 1.11825 0.92543 0.91757 0.91962 0.92429 0.91814 0.87535 0.88690 0.86904 0.81065 0.82459 0.80454 0.84920 0.91443 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.51 5.92 30.60 0.18 -1.33 16 3 C -0.09 -1.02 5.67 29.85 0.17 -0.85 16 4 C -0.03 -0.55 9.09 24.53 0.22 -0.33 16 5 C -0.21 -4.66 9.76 23.39 0.23 -4.44 16 6 C 0.48 16.87 7.77 70.10 0.54 17.41 16 7 O -0.54 -23.31 15.69 19.69 0.31 -23.00 16 8 O -0.29 -10.88 10.04 -0.78 -0.01 -10.89 16 9 C 0.11 4.68 5.19 22.50 0.12 4.80 16 10 C -0.19 -6.64 9.99 22.40 0.22 -6.42 16 11 C -0.05 -1.57 10.03 22.24 0.22 -1.34 16 12 C -0.19 -8.33 9.99 22.41 0.22 -8.10 16 13 C 0.13 6.72 6.65 22.56 0.15 6.87 16 14 O -0.22 -13.77 9.76 -22.75 -0.22 -13.99 16 15 C -0.42 -26.00 9.49 67.92 0.64 -25.35 16 16 H 0.09 5.25 5.20 -2.91 -0.02 5.23 16 17 C -0.02 -0.89 5.49 84.83 0.47 -0.43 16 18 N -0.91 -56.90 13.67 21.61 0.30 -56.61 16 19 Si 1.02 44.86 29.55 68.60 2.03 46.88 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.25 -12.54 8.59 22.49 0.19 -12.34 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.78 7.82 -2.39 -0.02 0.76 16 31 H 0.11 2.54 7.49 -2.91 -0.02 2.52 16 32 H 0.17 2.70 7.87 -2.91 -0.02 2.68 16 33 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.13 5.37 8.06 -2.91 -0.02 5.34 16 36 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.11 5.79 5.64 -2.91 -0.02 5.77 16 Total: -1.00 -79.24 328.92 7.77 -71.47 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.07 Total: 18.63 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 4.30 Total: -32.49 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.30 Total: -56.61 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: 0.08 Total: -47.89 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -79.24 7.77 -71.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842426904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.296 kcal (2) G-P(sol) polarization free energy of solvation -79.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds