Wall clock time and date at job start Mon Mar 30 2020 01:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46751 * 2 1 4 4 C 1.50699 * 109.46963 * 180.02562 * 3 2 1 5 5 C 1.33094 * 120.00043 * 182.63849 * 4 3 2 6 6 C 1.46936 * 120.00058 * 4.27416 * 5 4 3 7 7 O 1.21548 * 119.99416 * 5.25676 * 6 5 4 8 8 O 1.34805 * 120.00029 * 185.25928 * 6 5 4 9 9 C 1.35909 * 116.99885 * 175.01922 * 8 6 5 10 10 C 1.38829 * 120.02392 * 255.52886 * 9 8 6 11 11 C 1.38190 * 120.07913 * 180.02562 * 10 9 8 12 12 C 1.38153 * 120.12351 * 359.75189 * 11 10 9 13 13 C 1.38897 * 120.04282 * 0.50543 * 12 11 10 14 14 O 1.35757 * 120.03823 * 179.76652 * 13 12 11 15 15 C 1.34823 * 116.99671 * 173.57540 * 14 13 12 16 16 H 1.08003 * 120.00430 * 5.12083 * 15 14 13 17 17 C 1.38662 * 119.99928 * 185.11746 * 15 14 13 18 18 N 1.31556 * 119.99424 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47058 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46659 * 120.00317 * 19 17 15 22 22 H 1.48493 * 109.47191 * 240.00338 * 19 17 15 23 23 C 1.38583 * 120.01730 * 75.55529 * 9 8 6 24 24 H 1.08998 * 109.47155 * 60.00137 * 1 2 3 25 25 H 1.09005 * 109.46788 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46877 * 299.99504 * 1 2 3 27 27 H 1.08994 * 109.46825 * 240.00386 * 2 1 3 28 28 H 1.09001 * 109.47576 * 119.99575 * 2 1 3 29 29 H 1.08996 * 109.47504 * 60.00187 * 3 2 1 30 30 H 1.08998 * 109.47179 * 299.99848 * 3 2 1 31 31 H 1.08003 * 119.99938 * 2.64746 * 4 3 2 32 32 H 1.07998 * 119.99982 * 184.26225 * 5 4 3 33 33 H 1.07994 * 119.95911 * 0.05198 * 10 9 8 34 34 H 1.08002 * 119.93600 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.97658 * 180.26846 * 12 11 10 36 36 H 0.97006 * 119.99685 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.06563 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2124 2.5941 0.0523 6 6 3.4808 3.8590 0.2060 7 8 2.2780 3.8480 0.3807 8 8 4.1436 5.0317 0.1533 9 6 3.3958 6.1657 0.1982 10 6 3.1834 6.9039 -0.9582 11 6 2.4237 8.0574 -0.9137 12 6 1.8690 8.4767 0.2801 13 6 2.0827 7.7449 1.4411 14 8 1.5415 8.1597 2.6151 15 6 1.6744 7.3368 3.6748 16 1 2.2632 6.4355 3.5882 17 6 1.0553 7.6477 4.8759 18 7 0.3378 8.7454 4.9812 19 14 1.2401 6.5081 6.3444 20 1 2.0913 5.3508 5.9688 21 1 1.8748 7.2454 7.4663 22 1 -0.0985 6.0225 6.7656 23 6 2.8453 6.5860 1.3985 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 4.0870 0.5083 -0.0442 32 1 5.2901 2.5986 -0.0175 33 1 3.6121 6.5762 -1.8936 34 1 2.2596 8.6297 -1.8148 35 1 1.2721 9.3762 0.3112 36 1 -0.0956 8.9627 5.8213 37 1 3.0094 6.0130 2.2992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842426906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:26 Heat of formation + Delta-G solvation = -69.380595 kcal Electronic energy + Delta-G solvation = -20622.739500 eV Core-core repulsion = 17331.705407 eV Total energy + Delta-G solvation = -3291.034094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79474 -38.85022 -37.46452 -35.92018 -35.35997 -32.61205 -32.29111 -29.75875 -28.92421 -27.27103 -25.42849 -24.02492 -21.81804 -21.58910 -21.18551 -19.57155 -18.29171 -17.85825 -16.75210 -15.95281 -15.66849 -15.27012 -15.10274 -14.59587 -14.33830 -14.09732 -13.90072 -13.57365 -13.20263 -12.93635 -12.78139 -12.61921 -12.39153 -11.86395 -11.59401 -11.48287 -11.26845 -11.07255 -11.01489 -10.91964 -10.84910 -10.45975 -10.27252 -9.98302 -9.56101 -9.49251 -8.86938 -8.14395 -7.34383 -6.47642 -4.06737 1.13683 1.81489 2.22591 3.03297 3.10775 3.13393 3.19286 3.25302 3.95458 4.46985 4.56759 4.78028 4.93370 4.99553 5.07198 5.21010 5.24768 5.32386 5.59856 5.61907 5.62824 5.75504 5.79503 5.93864 6.00739 6.08862 6.10055 6.12853 6.17878 6.27176 6.50033 6.58636 6.93289 7.02890 7.10723 7.15408 7.34624 7.61987 7.96443 8.22018 8.97801 9.64224 10.70016 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.005431 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.999171 B = 5154.341925 C = 6584.570643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.108 4.108 4 C -0.050 4.050 5 C -0.200 4.200 6 C 0.481 3.519 7 O -0.482 6.482 8 O -0.295 6.295 9 C 0.122 3.878 10 C -0.212 4.212 11 C -0.065 4.065 12 C -0.187 4.187 13 C 0.164 3.836 14 O -0.172 6.172 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.041 3.959 18 N -0.860 5.860 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.229 4.229 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.270 0.730 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -13.994 -9.858 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.145 4.145 4 C -0.068 4.068 5 C -0.219 4.219 6 C 0.328 3.672 7 O -0.370 6.370 8 O -0.211 6.211 9 C 0.082 3.918 10 C -0.231 4.231 11 C -0.084 4.084 12 C -0.206 4.206 13 C 0.109 3.891 14 O -0.075 6.075 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.163 4.163 18 N -0.495 5.495 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.249 4.249 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.080 0.920 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.927 -13.649 -9.522 17.356 hybrid contribution 0.235 -0.555 0.791 0.994 sum 5.162 -14.204 -8.731 17.454 Atomic orbital electron populations 1.21761 0.95607 1.01338 1.02391 1.21636 0.96431 0.96608 1.01678 1.21166 0.91353 0.96889 1.05051 1.23985 0.97163 0.96955 0.88699 1.21932 1.00860 0.89212 1.09885 1.21899 0.86424 0.84698 0.74191 1.90897 1.15408 1.87320 1.43347 1.84585 1.39460 1.13391 1.83664 1.18204 0.95020 0.85019 0.93594 1.20512 1.06759 0.99591 0.96263 1.20483 0.95819 0.95307 0.96769 1.20329 1.06786 1.02827 0.90695 1.19116 0.91177 0.91190 0.87579 1.83995 1.66343 1.43041 1.14079 1.21372 1.32910 1.04731 0.87767 0.89130 1.25283 0.95501 0.97251 0.98290 1.70047 1.29721 1.23112 1.26593 0.85651 0.78566 0.79304 0.79984 1.19092 1.20003 1.19999 1.21214 1.04713 1.01077 0.97921 0.92632 0.92931 0.92366 0.92196 0.91997 0.87969 0.89564 0.84721 0.84229 0.86800 0.86019 0.85898 0.91981 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.13 -1.13 5.87 -26.73 -0.16 -1.29 16 3 C -0.11 -1.25 3.83 -27.88 -0.11 -1.36 16 4 C -0.05 -0.49 9.65 -36.10 -0.35 -0.84 16 5 C -0.20 -2.39 10.15 -37.85 -0.38 -2.78 16 6 C 0.48 8.25 7.71 34.25 0.26 8.51 16 7 O -0.48 -9.58 12.64 -19.30 -0.24 -9.82 16 8 O -0.30 -5.54 10.04 -25.00 -0.25 -5.79 16 9 C 0.12 2.57 5.18 -39.24 -0.20 2.36 16 10 C -0.21 -3.99 9.99 -39.38 -0.39 -4.38 16 11 C -0.07 -1.20 10.03 -39.63 -0.40 -1.59 16 12 C -0.19 -4.02 9.99 -39.37 -0.39 -4.41 16 13 C 0.16 4.11 6.64 -39.13 -0.26 3.85 16 14 O -0.17 -5.00 9.76 0.05 0.00 -5.00 16 15 C -0.39 -11.29 9.49 30.89 0.29 -10.99 16 16 H 0.09 2.49 5.21 -52.48 -0.27 2.21 16 17 C 0.04 1.16 5.49 -17.51 -0.10 1.06 16 18 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 19 Si 0.94 21.06 29.55 -169.99 -5.02 16.03 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.23 -5.45 8.60 -39.25 -0.34 -5.79 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 1.48 6.63 -51.93 -0.34 1.13 16 30 H 0.09 1.10 7.76 -51.93 -0.40 0.70 16 31 H 0.14 0.87 7.99 -52.48 -0.42 0.45 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.13 3.22 5.64 -52.49 -0.30 2.92 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -32.51 324.02 -6.71 -39.21 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.68 Total: 3.90 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.15 Total: -18.73 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.76 Total: -24.68 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.49 Total: -20.61 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.51 -6.71 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842426906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.170 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds