Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46751 * 2 1 4 4 C 1.50699 * 109.46963 * 180.02562 * 3 2 1 5 5 C 1.33094 * 120.00043 * 182.63849 * 4 3 2 6 6 C 1.46936 * 120.00058 * 4.27416 * 5 4 3 7 7 O 1.21548 * 119.99416 * 5.25676 * 6 5 4 8 8 O 1.34805 * 120.00029 * 185.25928 * 6 5 4 9 9 C 1.35909 * 116.99885 * 175.01922 * 8 6 5 10 10 C 1.38829 * 120.02392 * 255.52886 * 9 8 6 11 11 C 1.38190 * 120.07913 * 180.02562 * 10 9 8 12 12 C 1.38153 * 120.12351 * 359.75189 * 11 10 9 13 13 C 1.38897 * 120.04282 * 0.50543 * 12 11 10 14 14 O 1.35757 * 120.03823 * 179.76652 * 13 12 11 15 15 C 1.34823 * 116.99671 * 173.57540 * 14 13 12 16 16 H 1.08003 * 120.00430 * 5.12083 * 15 14 13 17 17 C 1.38662 * 119.99928 * 185.11746 * 15 14 13 18 18 N 1.31556 * 119.99424 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47058 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46659 * 120.00317 * 19 17 15 22 22 H 1.48493 * 109.47191 * 240.00338 * 19 17 15 23 23 C 1.38583 * 120.01730 * 75.55529 * 9 8 6 24 24 H 1.08998 * 109.47155 * 60.00137 * 1 2 3 25 25 H 1.09005 * 109.46788 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46877 * 299.99504 * 1 2 3 27 27 H 1.08994 * 109.46825 * 240.00386 * 2 1 3 28 28 H 1.09001 * 109.47576 * 119.99575 * 2 1 3 29 29 H 1.08996 * 109.47504 * 60.00187 * 3 2 1 30 30 H 1.08998 * 109.47179 * 299.99848 * 3 2 1 31 31 H 1.08003 * 119.99938 * 2.64746 * 4 3 2 32 32 H 1.07998 * 119.99982 * 184.26225 * 5 4 3 33 33 H 1.07994 * 119.95911 * 0.05198 * 10 9 8 34 34 H 1.08002 * 119.93600 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.97658 * 180.26846 * 12 11 10 36 36 H 0.97006 * 119.99685 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.06563 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2124 2.5941 0.0523 6 6 3.4808 3.8590 0.2060 7 8 2.2780 3.8480 0.3807 8 8 4.1436 5.0317 0.1533 9 6 3.3958 6.1657 0.1982 10 6 3.1834 6.9039 -0.9582 11 6 2.4237 8.0574 -0.9137 12 6 1.8690 8.4767 0.2801 13 6 2.0827 7.7449 1.4411 14 8 1.5415 8.1597 2.6151 15 6 1.6744 7.3368 3.6748 16 1 2.2632 6.4355 3.5882 17 6 1.0553 7.6477 4.8759 18 7 0.3378 8.7454 4.9812 19 14 1.2401 6.5081 6.3444 20 1 2.0913 5.3508 5.9688 21 1 1.8748 7.2454 7.4663 22 1 -0.0985 6.0225 6.7656 23 6 2.8453 6.5860 1.3985 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 4.0870 0.5083 -0.0442 32 1 5.2901 2.5986 -0.0175 33 1 3.6121 6.5762 -1.8936 34 1 2.2596 8.6297 -1.8148 35 1 1.2721 9.3762 0.3112 36 1 -0.0956 8.9627 5.8213 37 1 3.0094 6.0130 2.2992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842426906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = -88.184585 kcal Electronic energy + Delta-G solvation = -20623.554903 eV Core-core repulsion = 17331.705407 eV Total energy + Delta-G solvation = -3291.849496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.26539 -40.61476 -38.95402 -37.49235 -36.49169 -34.37041 -33.50146 -31.41849 -30.67460 -28.28820 -27.45088 -25.33166 -23.51644 -22.82706 -22.31053 -20.81485 -20.13557 -19.55422 -18.25349 -17.47279 -17.14382 -16.89692 -16.23712 -16.09084 -15.84938 -15.65943 -15.30226 -15.11714 -14.69356 -14.49769 -13.99292 -13.76585 -13.59780 -13.41159 -13.14506 -12.98865 -12.78259 -12.57689 -12.38111 -12.19149 -11.92207 -11.83902 -11.67594 -11.55318 -11.18230 -10.88454 -10.50123 -9.81856 -9.18347 -8.55915 -6.25188 0.05932 0.19285 0.52330 1.27755 1.36039 1.46058 1.82167 1.88208 2.10730 2.71516 3.03244 3.36016 3.61904 3.82973 3.97361 4.06890 4.16497 4.17230 4.29588 4.49239 4.50813 4.51545 4.70936 4.72105 4.88304 4.91884 4.99256 4.99650 5.10597 5.21680 5.31049 5.36485 5.38682 5.41504 5.47572 5.51805 5.62639 5.91580 5.99752 6.78747 6.88011 7.63128 8.66702 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.005431 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.999171 B = 5154.341925 C = 6584.570643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C -0.114 4.114 4 C -0.018 4.018 5 C -0.217 4.217 6 C 0.471 3.529 7 O -0.522 6.522 8 O -0.297 6.297 9 C 0.115 3.885 10 C -0.192 4.192 11 C -0.047 4.047 12 C -0.195 4.195 13 C 0.128 3.872 14 O -0.221 6.221 15 C -0.418 4.418 16 H 0.089 0.911 17 C -0.015 4.015 18 N -0.912 5.912 19 Si 1.015 2.985 20 H -0.261 1.261 21 H -0.259 1.259 22 H -0.263 1.263 23 C -0.249 4.249 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.187 0.813 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.132 0.868 36 H 0.276 0.724 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 -16.596 -12.001 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.150 4.150 4 C -0.036 4.036 5 C -0.235 4.235 6 C 0.321 3.679 7 O -0.411 6.411 8 O -0.213 6.213 9 C 0.074 3.926 10 C -0.211 4.211 11 C -0.065 4.065 12 C -0.214 4.214 13 C 0.077 3.923 14 O -0.127 6.127 15 C -0.494 4.494 16 H 0.106 0.894 17 C -0.214 4.214 18 N -0.549 5.549 19 Si 0.834 3.166 20 H -0.185 1.185 21 H -0.183 1.183 22 H -0.188 1.188 23 C -0.269 4.269 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.204 0.796 32 H 0.191 0.809 33 H 0.174 0.826 34 H 0.194 0.806 35 H 0.149 0.851 36 H 0.085 0.915 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.720 -16.263 -11.718 21.141 hybrid contribution -0.260 0.162 1.120 1.161 sum 6.460 -16.100 -10.599 20.329 Atomic orbital electron populations 1.21802 0.96425 1.02110 1.01189 1.21614 0.95750 0.94791 1.03454 1.21124 0.93021 0.98280 1.02589 1.24424 0.96064 0.98199 0.84879 1.22149 1.02183 0.86810 1.12364 1.23034 0.86495 0.85358 0.73024 1.90902 1.17238 1.87556 1.45440 1.84604 1.39360 1.13424 1.83880 1.18419 0.94603 0.86249 0.93306 1.21105 1.04681 0.98509 0.96821 1.21080 0.93378 0.94848 0.97148 1.20712 1.07086 1.02883 0.90734 1.19702 0.92107 0.92722 0.87812 1.83951 1.68927 1.44415 1.15399 1.21712 1.33848 1.05164 0.88690 0.89383 1.26525 0.94744 0.99002 1.01090 1.70161 1.31561 1.25349 1.27859 0.84603 0.79097 0.77118 0.75818 1.18468 1.18331 1.18812 1.21179 1.06105 1.00996 0.98581 0.93261 0.91124 0.94252 0.89705 0.90712 0.91596 0.91218 0.79637 0.80944 0.82640 0.80597 0.85054 0.91479 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.91 71.98 0.71 -2.11 16 2 C -0.12 -1.84 5.87 30.60 0.18 -1.66 16 3 C -0.11 -2.51 3.83 29.85 0.11 -2.40 16 4 C -0.02 -0.30 9.65 24.53 0.24 -0.06 16 5 C -0.22 -4.63 10.15 23.40 0.24 -4.39 16 6 C 0.47 16.01 7.71 70.10 0.54 16.55 16 7 O -0.52 -21.40 12.64 19.68 0.25 -21.15 16 8 O -0.30 -10.96 10.04 -0.72 -0.01 -10.97 16 9 C 0.12 4.82 5.18 22.49 0.12 4.94 16 10 C -0.19 -6.68 9.99 22.40 0.22 -6.45 16 11 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 12 C -0.20 -8.41 9.99 22.41 0.22 -8.18 16 13 C 0.13 6.76 6.64 22.56 0.15 6.91 16 14 O -0.22 -13.83 9.76 -22.74 -0.22 -14.05 16 15 C -0.42 -25.82 9.49 67.92 0.64 -25.18 16 16 H 0.09 5.25 5.21 -2.91 -0.02 5.23 16 17 C -0.02 -0.89 5.49 84.84 0.47 -0.42 16 18 N -0.91 -56.81 13.67 21.62 0.30 -56.51 16 19 Si 1.01 44.83 29.55 68.60 2.03 46.86 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 23 C -0.25 -12.43 8.60 22.49 0.19 -12.24 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.98 6.63 -2.39 -0.02 1.97 16 30 H 0.07 1.77 7.76 -2.39 -0.02 1.76 16 31 H 0.19 1.28 7.99 -2.91 -0.02 1.25 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.13 5.34 8.06 -2.91 -0.02 5.31 16 36 H 0.28 15.59 8.31 -92.70 -0.77 14.82 16 37 H 0.11 5.74 5.64 -2.91 -0.02 5.72 16 Total: -1.00 -78.88 324.02 7.68 -71.21 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.07 Total: 20.67 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 4.26 Total: -36.04 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.30 Total: -56.51 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: 0.02 Total: -46.17 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -78.88 7.68 -71.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842426906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.976 kcal (2) G-P(sol) polarization free energy of solvation -78.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds