Wall clock time and date at job start Mon Mar 30 2020 01:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30998 * 120.00024 * 2 1 4 4 C 1.50701 * 119.99924 * 174.92476 * 3 2 1 5 5 C 1.50695 * 120.00352 * 354.92201 * 3 2 1 6 6 O 1.45202 * 109.47351 * 123.50014 * 5 3 2 7 7 C 1.34764 * 117.00374 * 180.02562 * 6 5 3 8 8 O 1.21506 * 119.99511 * 0.02562 * 7 6 5 9 9 C 1.47392 * 119.99829 * 180.02562 * 7 6 5 10 10 C 1.39724 * 120.20612 * 0.02562 * 9 7 6 11 11 C 1.37804 * 119.91407 * 179.97438 * 10 9 7 12 12 C 1.38594 * 120.33172 * 0.02562 * 11 10 9 13 13 C 1.38020 * 120.41262 * 0.02562 * 12 11 10 14 14 C 1.38838 * 120.07879 * 359.97438 * 13 12 11 15 15 O 1.35502 * 120.16667 * 179.97438 * 14 13 12 16 16 C 1.34817 * 116.99643 * 354.38676 * 15 14 13 17 17 H 1.07995 * 120.00577 * 5.06364 * 16 15 14 18 18 C 1.38704 * 119.99652 * 185.05788 * 16 15 14 19 19 N 1.31512 * 120.00321 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46928 * 60.00336 * 20 18 16 22 22 H 1.48496 * 109.47167 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47448 * 300.00436 * 20 18 16 24 24 H 1.08998 * 109.47622 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46961 * 300.00418 * 1 2 3 26 26 H 1.09006 * 109.46916 * 60.00020 * 1 2 3 27 27 H 1.07996 * 120.00108 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47551 * 269.99934 * 4 3 2 29 29 H 1.09001 * 109.47544 * 30.00107 * 4 3 2 30 30 H 1.09000 * 109.47068 * 149.99905 * 4 3 2 31 31 H 1.09004 * 109.46939 * 3.50565 * 5 3 2 32 32 H 1.08995 * 109.47735 * 243.50388 * 5 3 2 33 33 H 1.08003 * 120.04272 * 0.25705 * 10 9 7 34 34 H 1.08001 * 119.83712 * 179.97438 * 11 10 9 35 35 H 1.07995 * 119.79290 * 180.02562 * 12 11 10 36 36 H 1.08005 * 119.95951 * 180.02562 * 13 12 11 37 37 H 0.97005 * 120.00302 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 3.6645 1.1370 0.1155 5 6 1.4130 2.4370 -0.1155 6 8 1.7380 3.2844 1.0179 7 6 1.1466 4.4944 1.0668 8 8 0.3799 4.8317 0.1866 9 6 1.4298 5.4083 2.1879 10 6 2.3111 5.0248 3.2021 11 6 2.5719 5.8843 4.2472 12 6 1.9637 7.1286 4.2986 13 6 1.0901 7.5208 3.3047 14 6 0.8150 6.6685 2.2438 15 8 -0.0428 7.0516 1.2674 16 6 -0.6856 8.2236 1.4426 17 1 -0.4461 8.8496 2.2894 18 6 -1.6546 8.6255 0.5352 19 7 -1.9466 7.8632 -0.4959 20 14 -2.5448 10.2498 0.7776 21 1 -1.5595 11.3608 0.7659 22 1 -3.5253 10.4456 -0.3204 23 1 -3.2576 10.2342 2.0802 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9353 0.0004 28 1 3.9481 1.1831 1.1669 29 1 4.0647 0.2258 -0.3292 30 1 4.0677 2.0040 -0.4079 31 1 0.3410 2.2400 -0.1262 32 1 1.6991 2.9401 -1.0391 33 1 2.7908 4.0579 3.1645 34 1 3.2530 5.5864 5.0306 35 1 2.1747 7.7954 5.1215 36 1 0.6205 8.4923 3.3518 37 1 -2.6240 8.1444 -1.1307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842847770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:25 Heat of formation + Delta-G solvation = -74.450629 kcal Electronic energy + Delta-G solvation = -20877.962171 eV Core-core repulsion = 17586.708224 eV Total energy + Delta-G solvation = -3291.253947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84021 -38.72426 -36.77495 -36.38665 -34.96252 -32.41692 -30.73327 -30.14397 -28.97950 -27.04748 -25.45415 -24.34161 -23.20884 -21.58312 -20.18246 -18.22189 -18.05476 -17.41856 -16.54097 -15.98031 -15.55575 -14.69822 -14.54173 -14.40401 -14.25754 -13.82143 -13.69222 -13.58465 -13.35903 -12.80736 -12.64409 -12.24266 -12.20495 -12.02574 -11.76116 -11.49467 -11.35439 -11.13812 -10.92887 -10.90441 -10.74151 -10.50886 -10.05382 -9.75693 -9.28429 -8.93368 -8.79156 -8.32832 -7.38547 -6.51439 -4.11488 1.60570 1.95082 2.30366 3.08414 3.10795 3.13145 3.47159 3.49625 3.88504 4.55129 4.76758 4.90789 5.01062 5.13267 5.23480 5.33425 5.50141 5.57620 5.60772 5.62691 5.65219 5.71775 5.82681 5.87739 5.95179 6.04508 6.10652 6.12877 6.53833 6.56837 6.64563 6.81121 6.89342 7.00980 7.11448 7.22537 7.30796 7.65330 7.86823 8.74340 8.88577 9.57749 10.62208 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.005030 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.654194 B = 5565.089308 C = 6850.391314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 C -0.129 4.129 4 C -0.111 4.111 5 C 0.100 3.900 6 O -0.361 6.361 7 C 0.496 3.504 8 O -0.478 6.478 9 C -0.216 4.216 10 C -0.015 4.015 11 C -0.235 4.235 12 C -0.044 4.044 13 C -0.239 4.239 14 C 0.191 3.809 15 O -0.125 6.125 16 C -0.404 4.404 17 H 0.096 0.904 18 C 0.045 3.955 19 N -0.833 5.833 20 Si 0.943 3.057 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -9.636 3.972 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C -0.129 4.129 4 C -0.167 4.167 5 C 0.026 3.974 6 O -0.280 6.280 7 C 0.341 3.659 8 O -0.364 6.364 9 C -0.218 4.218 10 C -0.034 4.034 11 C -0.254 4.254 12 C -0.062 4.062 13 C -0.258 4.258 14 C 0.131 3.869 15 O -0.023 6.023 16 C -0.479 4.479 17 H 0.113 0.887 18 C -0.163 4.163 19 N -0.463 5.463 20 Si 0.767 3.233 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.193 1.193 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.671 -9.645 3.188 12.153 hybrid contribution -0.461 0.822 0.036 0.943 sum 6.210 -8.823 3.224 11.261 Atomic orbital electron populations 1.20924 0.93103 1.02227 1.02548 1.22702 0.96227 0.97073 1.00811 1.21422 0.96354 0.93301 1.01784 1.20728 0.91561 1.01991 1.02466 1.21896 0.99414 0.87617 0.88489 1.86549 1.66946 1.27952 1.46570 1.21120 0.78623 0.79877 0.86234 1.90996 1.32954 1.74578 1.37910 1.18035 1.10938 0.93757 0.99119 1.20960 0.92902 0.98108 0.91391 1.20539 1.07371 0.96224 1.01257 1.20964 0.93504 0.95349 0.96411 1.21107 1.05559 1.01970 0.97182 1.19241 0.89288 0.90680 0.87681 1.84146 1.45463 1.36784 1.35897 1.21488 1.18866 0.95169 1.12409 0.88693 1.25415 0.96289 0.99668 0.94929 1.70107 1.29044 1.36214 1.10985 0.85762 0.79079 0.79937 0.78555 1.19275 1.20102 1.19276 0.92043 0.91207 0.91402 0.86735 0.90991 0.92177 0.91794 0.90550 0.90801 0.85789 0.86998 0.86968 0.84840 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.66 36.00 0.31 -1.14 16 2 C -0.15 -1.69 9.85 -36.03 -0.36 -2.05 16 3 C -0.13 -1.68 5.74 -101.07 -0.58 -2.26 16 4 C -0.11 -1.23 9.92 36.01 0.36 -0.87 16 5 C 0.10 1.64 5.53 36.00 0.20 1.84 16 6 O -0.36 -6.92 9.35 -40.67 -0.38 -7.30 16 7 C 0.50 11.53 7.89 34.46 0.27 11.80 16 8 O -0.48 -13.10 14.96 -26.59 -0.40 -13.49 16 9 C -0.22 -4.88 5.89 -104.83 -0.62 -5.50 16 10 C -0.02 -0.28 9.61 -39.19 -0.38 -0.66 16 11 C -0.23 -3.95 10.02 -39.61 -0.40 -4.35 16 12 C -0.04 -0.77 10.03 -39.53 -0.40 -1.17 16 13 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 14 C 0.19 4.75 6.66 -38.57 -0.26 4.50 16 15 O -0.12 -3.66 7.84 -21.02 -0.16 -3.83 16 16 C -0.40 -11.29 9.49 30.90 0.29 -10.99 16 17 H 0.10 2.39 5.21 -52.49 -0.27 2.11 16 18 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 19 N -0.83 -24.77 13.67 55.48 0.76 -24.02 16 20 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 26 H 0.07 0.77 7.60 -51.93 -0.39 0.37 16 27 H 0.11 1.05 8.02 -52.49 -0.42 0.63 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 30 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.08 1.28 5.78 -51.93 -0.30 0.98 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.12 1.98 7.61 -52.48 -0.40 1.58 16 34 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -32.80 323.40 -6.92 -39.72 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.58 Total: 4.02 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.00 Total: -15.15 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.76 Total: -24.02 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.94 Total: -24.62 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.80 -6.92 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842847770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.732 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds