Wall clock time and date at job start Mon Mar 30 2020 01:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30998 * 120.00024 * 2 1 4 4 C 1.50701 * 119.99924 * 174.92476 * 3 2 1 5 5 C 1.50695 * 120.00352 * 354.92201 * 3 2 1 6 6 O 1.45202 * 109.47351 * 123.50014 * 5 3 2 7 7 C 1.34764 * 117.00374 * 180.02562 * 6 5 3 8 8 O 1.21506 * 119.99511 * 0.02562 * 7 6 5 9 9 C 1.47392 * 119.99829 * 180.02562 * 7 6 5 10 10 C 1.39724 * 120.20612 * 0.02562 * 9 7 6 11 11 C 1.37804 * 119.91407 * 179.97438 * 10 9 7 12 12 C 1.38594 * 120.33172 * 0.02562 * 11 10 9 13 13 C 1.38020 * 120.41262 * 0.02562 * 12 11 10 14 14 C 1.38838 * 120.07879 * 359.97438 * 13 12 11 15 15 O 1.35502 * 120.16667 * 179.97438 * 14 13 12 16 16 C 1.34817 * 116.99643 * 354.38676 * 15 14 13 17 17 H 1.07995 * 120.00577 * 5.06364 * 16 15 14 18 18 C 1.38704 * 119.99652 * 185.05788 * 16 15 14 19 19 N 1.31512 * 120.00321 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46928 * 60.00336 * 20 18 16 22 22 H 1.48496 * 109.47167 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47448 * 300.00436 * 20 18 16 24 24 H 1.08998 * 109.47622 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46961 * 300.00418 * 1 2 3 26 26 H 1.09006 * 109.46916 * 60.00020 * 1 2 3 27 27 H 1.07996 * 120.00108 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47551 * 269.99934 * 4 3 2 29 29 H 1.09001 * 109.47544 * 30.00107 * 4 3 2 30 30 H 1.09000 * 109.47068 * 149.99905 * 4 3 2 31 31 H 1.09004 * 109.46939 * 3.50565 * 5 3 2 32 32 H 1.08995 * 109.47735 * 243.50388 * 5 3 2 33 33 H 1.08003 * 120.04272 * 0.25705 * 10 9 7 34 34 H 1.08001 * 119.83712 * 179.97438 * 11 10 9 35 35 H 1.07995 * 119.79290 * 180.02562 * 12 11 10 36 36 H 1.08005 * 119.95951 * 180.02562 * 13 12 11 37 37 H 0.97005 * 120.00302 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 3.6645 1.1370 0.1155 5 6 1.4130 2.4370 -0.1155 6 8 1.7380 3.2844 1.0179 7 6 1.1466 4.4944 1.0668 8 8 0.3799 4.8317 0.1866 9 6 1.4298 5.4083 2.1879 10 6 2.3111 5.0248 3.2021 11 6 2.5719 5.8843 4.2472 12 6 1.9637 7.1286 4.2986 13 6 1.0901 7.5208 3.3047 14 6 0.8150 6.6685 2.2438 15 8 -0.0428 7.0516 1.2674 16 6 -0.6856 8.2236 1.4426 17 1 -0.4461 8.8496 2.2894 18 6 -1.6546 8.6255 0.5352 19 7 -1.9466 7.8632 -0.4959 20 14 -2.5448 10.2498 0.7776 21 1 -1.5595 11.3608 0.7659 22 1 -3.5253 10.4456 -0.3204 23 1 -3.2576 10.2342 2.0802 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9353 0.0004 28 1 3.9481 1.1831 1.1669 29 1 4.0647 0.2258 -0.3292 30 1 4.0677 2.0040 -0.4079 31 1 0.3410 2.2400 -0.1262 32 1 1.6991 2.9401 -1.0391 33 1 2.7908 4.0579 3.1645 34 1 3.2530 5.5864 5.0306 35 1 2.1747 7.7954 5.1215 36 1 0.6205 8.4923 3.3518 37 1 -2.6240 8.1444 -1.1307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842847770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:25 Heat of formation + Delta-G solvation = -93.648192 kcal Electronic energy + Delta-G solvation = -20878.794640 eV Core-core repulsion = 17586.708224 eV Total energy + Delta-G solvation = -3292.086416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58525 -40.44332 -38.23004 -38.01428 -36.47993 -34.38230 -32.35672 -31.07525 -30.65072 -28.39497 -27.39795 -25.38808 -24.74946 -23.28815 -21.85711 -19.92534 -19.51885 -18.99254 -18.30229 -17.51929 -17.16325 -16.37221 -16.16930 -15.87759 -15.61446 -15.41931 -15.24505 -14.89395 -14.64614 -14.34923 -13.84679 -13.73801 -13.60584 -13.57343 -13.01752 -12.94935 -12.72994 -12.53125 -12.42287 -12.37710 -12.16843 -11.99282 -11.62206 -11.57772 -11.08443 -10.85488 -9.93826 -9.80525 -9.12978 -8.49111 -6.20656 -0.05728 0.68134 0.88745 1.32847 1.45846 1.50873 1.72417 1.96861 2.14084 2.81229 3.13924 3.36215 3.66323 3.84919 3.97998 4.08702 4.17727 4.24748 4.33831 4.37483 4.51092 4.59791 4.67319 4.72600 4.86825 4.90924 4.94089 5.03843 5.04456 5.11710 5.20676 5.36089 5.46579 5.57207 5.62090 5.65559 5.85202 5.92176 6.11666 6.89142 6.97017 7.70604 8.70941 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.005030 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.654194 B = 5565.089308 C = 6850.391314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C -0.152 4.152 4 C -0.107 4.107 5 C 0.094 3.906 6 O -0.347 6.347 7 C 0.496 3.504 8 O -0.533 6.533 9 C -0.238 4.238 10 C -0.012 4.012 11 C -0.203 4.203 12 C -0.026 4.026 13 C -0.256 4.256 14 C 0.156 3.844 15 O -0.188 6.188 16 C -0.429 4.429 17 H 0.112 0.888 18 C -0.020 4.020 19 N -0.905 5.905 20 Si 1.024 2.976 21 H -0.252 1.252 22 H -0.274 1.274 23 H -0.253 1.253 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.150 0.850 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.132 0.868 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.635 -10.664 7.332 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.152 4.152 4 C -0.163 4.163 5 C 0.021 3.979 6 O -0.265 6.265 7 C 0.343 3.657 8 O -0.424 6.424 9 C -0.241 4.241 10 C -0.030 4.030 11 C -0.222 4.222 12 C -0.044 4.044 13 C -0.275 4.275 14 C 0.101 3.899 15 O -0.090 6.090 16 C -0.505 4.505 17 H 0.129 0.871 18 C -0.220 4.220 19 N -0.540 5.540 20 Si 0.842 3.158 21 H -0.176 1.176 22 H -0.199 1.199 23 H -0.177 1.177 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.167 0.833 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.150 0.850 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.188 -10.710 6.616 15.585 hybrid contribution -0.936 0.844 -0.752 1.467 sum 8.252 -9.866 5.864 14.136 Atomic orbital electron populations 1.20999 0.93454 1.03623 1.01425 1.23039 0.96183 0.97689 0.97457 1.21410 0.97477 0.91556 1.04767 1.20733 0.89822 1.02928 1.02832 1.22139 0.99718 0.88903 0.87178 1.86530 1.65848 1.26540 1.47539 1.21489 0.77634 0.80786 0.85751 1.90979 1.35476 1.75891 1.40013 1.18493 1.12073 0.93276 1.00253 1.21379 0.91470 0.99802 0.90350 1.21226 1.05517 0.94671 1.00736 1.21542 0.90759 0.96285 0.95856 1.21299 1.07027 1.01667 0.97472 1.19994 0.89117 0.92301 0.88506 1.84150 1.48274 1.38022 1.38557 1.22074 1.19498 0.95604 1.13302 0.87060 1.26812 0.96941 1.03993 0.94240 1.70300 1.31186 1.39371 1.13123 0.84590 0.77734 0.74542 0.78913 1.17624 1.19861 1.17682 0.89351 0.92681 0.92316 0.83273 0.90602 0.89455 0.92911 0.91621 0.92163 0.82753 0.81600 0.82064 0.85042 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.66 71.23 0.62 -2.31 16 2 C -0.13 -2.56 9.85 25.65 0.25 -2.30 16 3 C -0.15 -3.81 5.74 -16.49 -0.09 -3.90 16 4 C -0.11 -2.14 9.92 71.24 0.71 -1.44 16 5 C 0.09 3.25 5.53 71.23 0.39 3.65 16 6 O -0.35 -13.62 9.35 -56.75 -0.53 -14.15 16 7 C 0.50 24.30 7.89 70.23 0.55 24.86 16 8 O -0.53 -31.84 14.96 26.81 0.40 -31.44 16 9 C -0.24 -10.96 5.89 -20.00 -0.12 -11.08 16 10 C -0.01 -0.40 9.61 22.53 0.22 -0.19 16 11 C -0.20 -5.66 10.02 22.25 0.22 -5.43 16 12 C -0.03 -0.81 10.03 22.30 0.22 -0.59 16 13 C -0.26 -10.71 9.16 22.36 0.20 -10.50 16 14 C 0.16 8.08 6.66 22.92 0.15 8.23 16 15 O -0.19 -11.86 7.84 1.01 0.01 -11.85 16 16 C -0.43 -25.52 9.49 67.93 0.64 -24.87 16 17 H 0.11 5.84 5.21 -2.91 -0.02 5.83 16 18 C -0.02 -1.18 5.49 84.85 0.47 -0.71 16 19 N -0.90 -58.33 13.67 21.62 0.30 -58.04 16 20 Si 1.02 43.22 29.55 68.60 2.03 45.24 16 21 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.34 7.91 -2.39 -0.02 1.32 16 26 H 0.06 1.36 7.60 -2.38 -0.02 1.34 16 27 H 0.15 2.08 8.02 -2.91 -0.02 2.05 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.27 8.04 -2.39 -0.02 1.25 16 30 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.07 2.38 5.78 -2.38 -0.01 2.37 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.15 4.26 7.61 -2.91 -0.02 4.24 16 34 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.13 5.45 5.64 -2.91 -0.02 5.44 16 37 H 0.27 16.10 8.31 -92.70 -0.77 15.33 16 Total: -1.00 -81.64 323.40 7.72 -73.91 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.08 Total: 22.91 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 4.44 Total: -26.59 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.30 Total: -58.04 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -0.12 Total: -57.44 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -81.64 7.72 -73.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842847770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.734 kcal (2) G-P(sol) polarization free energy of solvation -81.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds