Wall clock time and date at job start Mon Mar 30 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.31011 * 119.99709 * 2 1 4 4 C 1.50696 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99664 * 179.97438 * 3 2 1 6 6 O 1.45194 * 109.47396 * 0.02562 * 5 3 2 7 7 C 1.34765 * 116.99702 * 180.02562 * 6 5 3 8 8 O 1.21506 * 120.00237 * 359.97438 * 7 6 5 9 9 C 1.47395 * 119.99623 * 179.97438 * 7 6 5 10 10 C 1.39734 * 120.20534 * 0.02562 * 9 7 6 11 11 C 1.37806 * 119.91198 * 180.02562 * 10 9 7 12 12 C 1.38588 * 120.33558 * 359.97438 * 11 10 9 13 13 C 1.38028 * 120.40874 * 0.02562 * 12 11 10 14 14 C 1.38823 * 120.08297 * 0.02562 * 13 12 11 15 15 O 1.35508 * 120.16898 * 180.02562 * 14 13 12 16 16 C 1.34810 * 116.99710 * 354.39018 * 15 14 13 17 17 H 1.07997 * 120.00078 * 5.05946 * 16 15 14 18 18 C 1.38703 * 119.99974 * 185.05742 * 16 15 14 19 19 N 1.31514 * 119.99875 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99874 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47316 * 90.00066 * 20 18 16 22 22 H 1.48501 * 109.47207 * 209.99775 * 20 18 16 23 23 H 1.48494 * 109.47176 * 330.00011 * 20 18 16 24 24 H 1.09001 * 109.47363 * 299.99574 * 1 2 3 25 25 H 1.09001 * 109.47877 * 60.00027 * 1 2 3 26 26 H 1.09007 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00788 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47338 * 270.00074 * 4 3 2 29 29 H 1.08999 * 109.47224 * 30.00462 * 4 3 2 30 30 H 1.09002 * 109.46911 * 149.99981 * 4 3 2 31 31 H 1.08999 * 109.46939 * 239.99359 * 5 3 2 32 32 H 1.09005 * 109.46788 * 120.00003 * 5 3 2 33 33 H 1.07995 * 120.04158 * 359.97438 * 10 9 7 34 34 H 1.08001 * 119.82948 * 179.97438 * 11 10 9 35 35 H 1.07992 * 119.79703 * 179.74492 * 12 11 10 36 36 H 1.08006 * 119.95539 * 179.97438 * 13 12 11 37 37 H 0.97006 * 119.99680 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4083 2.4396 -0.0006 5 6 3.6689 1.1346 0.0006 6 8 4.1529 -0.2343 0.0005 7 6 5.4890 -0.4107 0.0015 8 8 6.2291 0.5529 0.0020 9 6 6.0524 -1.7728 0.0020 10 6 5.2052 -2.8840 0.0009 11 6 5.7384 -4.1547 0.0019 12 6 7.1122 -4.3372 0.0035 13 6 7.9616 -3.2492 0.0046 14 6 7.4430 -1.9615 0.0047 15 8 8.2752 -0.8921 0.0052 16 6 9.5944 -1.1434 0.1231 17 1 9.9515 -2.1626 0.1293 18 6 10.4931 -0.0930 0.2364 19 7 11.7800 -0.3382 0.3519 20 14 9.8753 1.6698 0.2263 21 1 9.5804 2.0990 1.6170 22 1 10.9158 2.5557 -0.3549 23 1 8.6387 1.7563 -0.5912 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.0470 -0.9352 0.0004 28 1 1.2270 2.7541 -1.0284 29 1 0.4557 2.3094 0.5130 30 1 1.9972 3.1994 0.5133 31 1 4.0318 1.6487 0.8905 32 1 4.0325 1.6483 -0.8894 33 1 4.1339 -2.7471 0.0001 34 1 5.0824 -5.0126 0.0015 35 1 7.5208 -5.3369 0.0085 36 1 9.0311 -3.4000 0.0063 37 1 12.4085 0.3965 0.4308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842847771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:27 Heat of formation + Delta-G solvation = -75.685269 kcal Electronic energy + Delta-G solvation = -20882.224971 eV Core-core repulsion = 17590.917486 eV Total energy + Delta-G solvation = -3291.307485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07914 -38.94365 -36.92710 -36.59679 -35.19799 -32.54170 -30.95987 -29.87132 -29.27310 -27.47478 -25.43080 -24.43551 -23.36347 -21.53943 -20.41619 -18.01582 -17.90831 -17.78231 -16.76393 -16.22649 -16.04205 -15.03307 -14.72383 -14.32392 -14.20432 -13.88027 -13.80721 -13.62022 -13.50014 -12.92927 -12.58573 -12.52463 -12.35252 -12.21510 -12.15597 -11.47293 -11.39663 -11.22187 -11.05182 -10.84618 -10.78010 -10.44966 -10.12798 -9.87820 -9.41428 -8.96438 -8.78264 -8.46396 -7.57093 -6.55039 -4.20269 1.42994 2.08775 2.15521 3.06142 3.23906 3.27112 3.32464 3.58396 4.27608 4.41623 4.64322 4.67042 4.95397 5.01181 5.19221 5.24884 5.35062 5.39107 5.43289 5.44411 5.51627 5.63712 5.66698 5.71234 5.79269 5.90069 5.95128 6.00571 6.34002 6.50684 6.60169 6.71130 6.82011 6.93944 7.06357 7.10452 7.42532 7.62258 7.86535 8.48126 8.79534 9.40582 10.49752 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017278 B = 0.005516 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.191129 B = 5075.075585 C = 6666.429486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.146 4.146 3 C -0.149 4.149 4 C -0.112 4.112 5 C 0.107 3.893 6 O -0.361 6.361 7 C 0.506 3.494 8 O -0.494 6.494 9 C -0.215 4.215 10 C -0.018 4.018 11 C -0.225 4.225 12 C -0.043 4.043 13 C -0.228 4.228 14 C 0.203 3.797 15 O -0.166 6.166 16 C -0.397 4.397 17 H 0.111 0.889 18 C 0.073 3.927 19 N -0.865 5.865 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.240 1.240 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.123 0.877 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.141 0.859 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.290 -0.761 -0.642 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.164 4.164 3 C -0.149 4.149 4 C -0.169 4.169 5 C 0.033 3.967 6 O -0.280 6.280 7 C 0.352 3.648 8 O -0.382 6.382 9 C -0.218 4.218 10 C -0.036 4.036 11 C -0.244 4.244 12 C -0.061 4.061 13 C -0.247 4.247 14 C 0.145 3.855 15 O -0.066 6.066 16 C -0.472 4.472 17 H 0.128 0.872 18 C -0.133 4.133 19 N -0.500 5.500 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.163 1.163 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.158 0.842 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.851 -0.060 -0.640 17.863 hybrid contribution 0.184 0.711 0.050 0.736 sum -17.667 0.651 -0.590 17.689 Atomic orbital electron populations 1.20862 0.93351 1.02153 1.01555 1.22746 0.95616 0.98500 0.99573 1.21427 0.93243 0.96117 1.04097 1.20736 0.99616 0.94327 1.02224 1.21565 0.91215 0.81310 1.02563 1.86460 1.25124 1.30678 1.85724 1.21060 0.79587 0.90315 0.73801 1.90911 1.59607 1.42127 1.45537 1.18045 0.90508 0.89962 1.23295 1.20953 0.98519 0.91257 0.92877 1.20616 0.94995 0.96333 1.12485 1.21037 0.93310 0.97942 0.93859 1.21238 1.01389 0.91302 1.10801 1.18985 0.88327 0.87352 0.90787 1.83751 1.18170 1.29329 1.75367 1.20949 0.77546 0.96972 1.51694 0.87209 1.24505 0.94038 1.00317 0.94462 1.69632 1.01141 1.34245 1.45012 0.86213 0.79875 0.81408 0.80105 1.19809 1.21011 1.16288 0.91742 0.91852 0.92152 0.85959 0.91309 0.91181 0.91839 0.90617 0.90622 0.85649 0.86704 0.86589 0.84162 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.88 36.00 0.32 -0.72 16 2 C -0.15 -1.67 9.63 -36.03 -0.35 -2.01 16 3 C -0.15 -1.78 6.05 -101.07 -0.61 -2.39 16 4 C -0.11 -1.02 9.54 36.00 0.34 -0.67 16 5 C 0.11 1.60 5.88 36.01 0.21 1.82 16 6 O -0.36 -6.29 7.86 -40.67 -0.32 -6.61 16 7 C 0.51 10.76 7.89 34.46 0.27 11.03 16 8 O -0.49 -12.24 14.96 -26.59 -0.40 -12.64 16 9 C -0.22 -4.52 5.89 -104.82 -0.62 -5.14 16 10 C -0.02 -0.30 9.61 -39.18 -0.38 -0.68 16 11 C -0.23 -3.55 10.02 -39.61 -0.40 -3.95 16 12 C -0.04 -0.73 10.03 -39.53 -0.40 -1.12 16 13 C -0.23 -4.76 9.16 -39.44 -0.36 -5.12 16 14 C 0.20 4.79 6.66 -38.58 -0.26 4.53 16 15 O -0.17 -4.53 6.67 -21.01 -0.14 -4.67 16 16 C -0.40 -11.20 9.95 30.90 0.31 -10.89 16 17 H 0.11 3.07 5.44 -52.49 -0.29 2.79 16 18 C 0.07 2.07 5.49 -17.52 -0.10 1.97 16 19 N -0.87 -24.77 13.96 55.48 0.77 -24.00 16 20 Si 0.90 22.81 28.62 -169.99 -4.86 17.95 16 21 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.24 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.06 0.49 7.36 -51.93 -0.38 0.11 16 25 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.12 1.52 6.82 -52.49 -0.36 1.17 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 30 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.13 1.80 7.61 -52.49 -0.40 1.40 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.14 3.00 5.64 -52.48 -0.30 2.71 16 37 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -31.18 320.55 -6.69 -37.87 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.57 Total: 0.61 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.01 Total: -13.34 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.77 Total: -24.00 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.86 Total: -23.92 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.86 Total: 17.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.18 -6.69 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842847771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.817 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds