Wall clock time and date at job start Mon Mar 30 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.31011 * 119.99709 * 2 1 4 4 C 1.50696 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99664 * 179.97438 * 3 2 1 6 6 O 1.45194 * 109.47396 * 0.02562 * 5 3 2 7 7 C 1.34765 * 116.99702 * 180.02562 * 6 5 3 8 8 O 1.21506 * 120.00237 * 359.97438 * 7 6 5 9 9 C 1.47395 * 119.99623 * 179.97438 * 7 6 5 10 10 C 1.39734 * 120.20534 * 0.02562 * 9 7 6 11 11 C 1.37806 * 119.91198 * 180.02562 * 10 9 7 12 12 C 1.38588 * 120.33558 * 359.97438 * 11 10 9 13 13 C 1.38028 * 120.40874 * 0.02562 * 12 11 10 14 14 C 1.38823 * 120.08297 * 0.02562 * 13 12 11 15 15 O 1.35508 * 120.16898 * 180.02562 * 14 13 12 16 16 C 1.34810 * 116.99710 * 354.39018 * 15 14 13 17 17 H 1.07997 * 120.00078 * 5.05946 * 16 15 14 18 18 C 1.38703 * 119.99974 * 185.05742 * 16 15 14 19 19 N 1.31514 * 119.99875 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99874 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47316 * 90.00066 * 20 18 16 22 22 H 1.48501 * 109.47207 * 209.99775 * 20 18 16 23 23 H 1.48494 * 109.47176 * 330.00011 * 20 18 16 24 24 H 1.09001 * 109.47363 * 299.99574 * 1 2 3 25 25 H 1.09001 * 109.47877 * 60.00027 * 1 2 3 26 26 H 1.09007 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00788 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47338 * 270.00074 * 4 3 2 29 29 H 1.08999 * 109.47224 * 30.00462 * 4 3 2 30 30 H 1.09002 * 109.46911 * 149.99981 * 4 3 2 31 31 H 1.08999 * 109.46939 * 239.99359 * 5 3 2 32 32 H 1.09005 * 109.46788 * 120.00003 * 5 3 2 33 33 H 1.07995 * 120.04158 * 359.97438 * 10 9 7 34 34 H 1.08001 * 119.82948 * 179.97438 * 11 10 9 35 35 H 1.07992 * 119.79703 * 179.74492 * 12 11 10 36 36 H 1.08006 * 119.95539 * 179.97438 * 13 12 11 37 37 H 0.97006 * 119.99680 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4083 2.4396 -0.0006 5 6 3.6689 1.1346 0.0006 6 8 4.1529 -0.2343 0.0005 7 6 5.4890 -0.4107 0.0015 8 8 6.2291 0.5529 0.0020 9 6 6.0524 -1.7728 0.0020 10 6 5.2052 -2.8840 0.0009 11 6 5.7384 -4.1547 0.0019 12 6 7.1122 -4.3372 0.0035 13 6 7.9616 -3.2492 0.0046 14 6 7.4430 -1.9615 0.0047 15 8 8.2752 -0.8921 0.0052 16 6 9.5944 -1.1434 0.1231 17 1 9.9515 -2.1626 0.1293 18 6 10.4931 -0.0930 0.2364 19 7 11.7800 -0.3382 0.3519 20 14 9.8753 1.6698 0.2263 21 1 9.5804 2.0990 1.6170 22 1 10.9158 2.5557 -0.3549 23 1 8.6387 1.7563 -0.5912 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.0470 -0.9352 0.0004 28 1 1.2270 2.7541 -1.0284 29 1 0.4557 2.3094 0.5130 30 1 1.9972 3.1994 0.5133 31 1 4.0318 1.6487 0.8905 32 1 4.0325 1.6483 -0.8894 33 1 4.1339 -2.7471 0.0001 34 1 5.0824 -5.0126 0.0015 35 1 7.5208 -5.3369 0.0085 36 1 9.0311 -3.4000 0.0063 37 1 12.4085 0.3965 0.4308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842847771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:27 Heat of formation + Delta-G solvation = -92.685252 kcal Electronic energy + Delta-G solvation = -20882.962146 eV Core-core repulsion = 17590.917486 eV Total energy + Delta-G solvation = -3292.044659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71047 -40.58980 -38.34452 -38.08847 -36.50932 -34.57638 -32.48593 -30.89235 -30.75108 -28.47088 -27.35458 -25.50294 -24.76091 -23.20329 -21.98569 -19.92468 -19.44872 -18.97368 -18.34298 -17.60827 -17.52099 -16.62894 -16.19332 -15.92566 -15.79839 -15.49986 -15.09966 -15.01369 -14.51906 -14.31298 -14.10129 -14.08286 -13.73375 -13.33288 -13.18235 -12.90502 -12.82049 -12.64452 -12.47088 -12.21572 -12.07095 -11.91336 -11.86563 -11.69999 -11.20687 -11.01103 -10.00491 -9.67258 -9.24894 -8.62243 -6.31968 -0.14738 0.59316 1.18859 1.22473 1.27134 1.53523 1.60112 1.63551 2.25031 2.69368 2.89787 3.06499 3.64822 3.84257 4.00622 4.16812 4.18928 4.20731 4.27976 4.43940 4.51831 4.56084 4.62313 4.76033 4.77431 4.94256 4.95628 5.03284 5.14140 5.20335 5.23559 5.31185 5.46143 5.56613 5.66303 5.72482 5.78938 6.00071 6.08900 6.72835 6.85330 7.48709 8.47763 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017278 B = 0.005516 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.191129 B = 5075.075585 C = 6666.429486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.144 4.144 3 C -0.162 4.162 4 C -0.109 4.109 5 C 0.100 3.900 6 O -0.347 6.347 7 C 0.506 3.494 8 O -0.537 6.537 9 C -0.227 4.227 10 C -0.012 4.012 11 C -0.192 4.192 12 C -0.028 4.028 13 C -0.249 4.249 14 C 0.170 3.830 15 O -0.209 6.209 16 C -0.406 4.406 17 H 0.097 0.903 18 C 0.030 3.970 19 N -0.906 5.906 20 Si 0.951 3.049 21 H -0.274 1.274 22 H -0.263 1.263 23 H -0.267 1.267 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.123 0.877 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.369 -2.677 -0.681 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.165 4.165 5 C 0.026 3.974 6 O -0.264 6.264 7 C 0.354 3.646 8 O -0.428 6.428 9 C -0.229 4.229 10 C -0.030 4.030 11 C -0.210 4.210 12 C -0.046 4.046 13 C -0.268 4.268 14 C 0.116 3.884 15 O -0.113 6.113 16 C -0.482 4.482 17 H 0.114 0.886 18 C -0.172 4.172 19 N -0.545 5.545 20 Si 0.775 3.225 21 H -0.200 1.200 22 H -0.187 1.187 23 H -0.191 1.191 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.128 0.872 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.178 0.822 34 H 0.187 0.813 35 H 0.176 0.824 36 H 0.141 0.859 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.986 -2.013 -0.680 22.088 hybrid contribution 1.021 0.973 0.049 1.411 sum -20.965 -1.040 -0.631 21.000 Atomic orbital electron populations 1.20893 0.90806 1.03259 1.02623 1.22950 0.97511 0.97569 0.98179 1.21487 0.91043 0.97997 1.05652 1.20777 0.99941 0.92656 1.03139 1.21832 0.93685 0.79794 1.02053 1.86441 1.22782 1.32344 1.84844 1.21286 0.80484 0.90141 0.72676 1.90898 1.60930 1.43512 1.47427 1.18456 0.90073 0.91340 1.23050 1.21428 0.99792 0.90520 0.91234 1.21286 0.94964 0.97345 1.07433 1.21556 0.93659 0.98492 0.90888 1.21325 1.01465 0.91718 1.12328 1.19669 0.89291 0.87949 0.91443 1.83737 1.17498 1.30810 1.79240 1.20927 0.78721 0.96522 1.51987 0.88552 1.25032 0.94313 1.02753 0.95059 1.69670 1.01650 1.34993 1.48169 0.85477 0.78572 0.79070 0.79363 1.19990 1.18714 1.19126 0.90519 0.90717 0.91148 0.87203 0.90349 0.89259 0.91904 0.91332 0.91331 0.82156 0.81308 0.82363 0.85891 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.88 71.23 0.63 -0.94 16 2 C -0.14 -2.90 9.63 25.63 0.25 -2.65 16 3 C -0.16 -3.58 6.05 -16.50 -0.10 -3.68 16 4 C -0.11 -1.71 9.54 71.23 0.68 -1.04 16 5 C 0.10 2.98 5.88 71.24 0.42 3.40 16 6 O -0.35 -11.83 7.86 -56.76 -0.45 -12.27 16 7 C 0.51 21.80 7.89 70.23 0.55 22.35 16 8 O -0.54 -27.80 14.96 26.81 0.40 -27.40 16 9 C -0.23 -9.37 5.89 -20.00 -0.12 -9.49 16 10 C -0.01 -0.35 9.61 22.53 0.22 -0.14 16 11 C -0.19 -4.90 10.02 22.25 0.22 -4.68 16 12 C -0.03 -0.83 10.03 22.30 0.22 -0.61 16 13 C -0.25 -10.37 9.16 22.36 0.20 -10.16 16 14 C 0.17 8.21 6.66 22.92 0.15 8.36 16 15 O -0.21 -12.05 6.67 1.02 0.01 -12.05 16 16 C -0.41 -24.38 9.95 67.93 0.68 -23.70 16 17 H 0.10 5.80 5.44 -2.91 -0.02 5.79 16 18 C 0.03 1.77 5.49 84.85 0.47 2.23 16 19 N -0.91 -54.45 13.96 21.62 0.30 -54.15 16 20 Si 0.95 49.79 28.62 68.60 1.96 51.75 16 21 H -0.27 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.27 -14.97 7.11 99.48 0.71 -14.27 16 24 H 0.08 0.86 7.36 -2.39 -0.02 0.84 16 25 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.11 2.44 6.82 -2.91 -0.02 2.42 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.07 6.44 -2.39 -0.02 1.06 16 30 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.16 3.73 7.61 -2.91 -0.02 3.71 16 34 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 37 H 0.29 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -73.76 320.55 7.78 -65.98 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.08 Total: 8.88 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.48 Total: -20.75 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.30 Total: -54.15 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.04 Total: -51.72 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.96 Total: 51.75 kcal Total: -73.76 7.78 -65.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842847771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.707 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds