Wall clock time and date at job start Mon Mar 30 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35754 * 119.99710 * 2 1 4 4 C 1.41524 * 120.00423 * 4.86120 * 3 2 1 5 5 C 1.37999 * 126.10914 * 174.64926 * 4 3 2 6 6 C 1.40291 * 106.52666 * 180.02562 * 5 4 3 7 7 C 1.35184 * 107.20907 * 359.97438 * 6 5 4 8 8 O 1.34007 * 109.03890 * 0.02562 * 7 6 5 9 9 C 1.41291 * 119.99765 * 179.97438 * 2 1 3 10 10 O 1.21714 * 119.99719 * 185.30915 * 9 2 1 11 11 O 1.34998 * 120.00253 * 5.31325 * 9 2 1 12 12 C 1.42903 * 117.00031 * 185.04327 * 11 9 2 13 13 C 1.52994 * 109.46996 * 184.76926 * 12 11 9 14 14 C 1.50699 * 115.55202 * 306.70159 * 13 12 11 15 15 H 1.08000 * 120.00317 * 144.00395 * 14 13 12 16 16 C 1.37877 * 119.99878 * 324.00643 * 14 13 12 17 17 N 1.31522 * 120.00054 * 0.80247 * 16 14 13 18 18 Si 1.86798 * 120.00086 * 180.80855 * 16 14 13 19 19 H 1.48503 * 109.47036 * 90.00098 * 18 16 14 20 20 H 1.48500 * 109.47176 * 209.99483 * 18 16 14 21 21 H 1.48499 * 109.47167 * 329.99673 * 18 16 14 22 22 C 1.53001 * 117.49885 * 161.03092 * 13 12 11 23 23 C 1.53001 * 117.50025 * 92.37379 * 13 12 11 24 24 H 1.09006 * 109.46391 * 55.89103 * 1 2 3 25 25 H 1.08994 * 109.47186 * 175.88390 * 1 2 3 26 26 H 1.08996 * 109.46914 * 295.89172 * 1 2 3 27 27 H 1.08000 * 119.99558 * 184.86449 * 3 2 1 28 28 H 1.07998 * 126.73237 * 359.97438 * 5 4 3 29 29 H 1.07993 * 126.39416 * 180.02562 * 6 5 4 30 30 H 1.07999 * 125.47906 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47032 * 304.76579 * 12 11 9 32 32 H 1.08998 * 109.47208 * 64.76888 * 12 11 9 33 33 H 0.96998 * 120.00026 * 185.01367 * 17 16 14 34 34 H 1.09002 * 117.50228 * 359.97438 * 22 13 12 35 35 H 1.09006 * 117.49707 * 145.01805 * 22 13 12 36 36 H 1.09001 * 117.49698 * 214.97766 * 23 13 12 37 37 H 1.09001 * 117.50142 * 359.97377 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 1.4820 2.3991 0.1039 5 6 2.0448 3.6538 0.2201 6 6 0.9796 4.5637 0.2938 7 6 -0.1644 3.8471 0.2210 8 8 0.1406 2.5472 0.1071 9 6 2.2135 -1.2236 0.0005 10 8 3.4267 -1.2258 0.0981 11 8 1.5428 -2.3903 -0.1072 12 6 2.3076 -3.5916 0.0115 13 6 1.4058 -4.7986 -0.2542 14 6 0.1475 -4.8644 0.5725 15 1 -0.7640 -5.2485 0.1390 16 6 0.1600 -4.4341 1.8824 17 7 1.2661 -3.9517 2.4056 18 14 -1.3938 -4.5367 2.9140 19 1 -1.4427 -5.8496 3.6063 20 1 -1.3920 -3.4457 3.9215 21 1 -2.5821 -4.3962 2.0345 22 6 2.0844 -6.1218 -0.6144 23 6 1.3372 -5.3271 -1.6884 24 1 -0.3632 0.5763 -0.8510 25 1 -0.3633 -1.0249 -0.0738 26 1 -0.3633 0.4487 0.9245 27 1 3.2629 1.1774 -0.0793 28 1 3.0985 3.8888 0.2494 29 1 1.0587 5.6365 0.3900 30 1 -1.1633 4.2564 0.2499 31 1 3.1202 -3.5783 -0.7150 32 1 2.7209 -3.6613 1.0177 33 1 1.2954 -3.7169 3.3462 34 1 3.1733 -6.1323 -0.6626 35 1 1.6204 -7.0398 -0.2537 36 1 0.3820 -5.7228 -2.0338 37 1 1.9342 -4.8147 -2.4428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847655026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:38 Heat of formation + Delta-G solvation = -42.850752 kcal Electronic energy + Delta-G solvation = -21125.090422 eV Core-core repulsion = 17835.206748 eV Total energy + Delta-G solvation = -3289.883673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.51900 -41.42359 -38.72991 -36.97392 -36.19811 -34.17513 -34.09915 -31.15853 -28.45407 -27.78264 -27.42417 -25.03865 -23.01976 -22.70177 -21.95087 -21.10881 -20.24735 -18.61734 -18.09938 -17.75564 -17.33943 -17.19408 -16.99925 -16.48275 -15.66168 -15.62094 -15.00022 -14.24650 -14.15193 -14.00200 -13.74854 -13.63009 -13.47771 -13.42591 -13.07802 -12.93741 -12.72564 -12.66466 -12.32460 -12.13916 -11.72501 -11.49454 -11.27356 -11.24308 -10.91333 -10.72460 -10.66915 -10.13498 -8.89275 -8.00464 -6.18515 -0.71444 1.10368 1.42089 1.44069 1.53762 1.66919 2.04811 2.09164 2.27429 2.43405 3.06111 3.57299 3.82611 3.89117 3.99576 4.08839 4.13835 4.24885 4.37142 4.51680 4.59484 4.72175 4.74770 4.81947 4.87975 4.90074 4.97231 5.00848 5.05000 5.15917 5.19726 5.43085 5.46166 5.51506 5.59435 5.83318 5.84620 6.12766 6.33558 6.78533 7.00197 7.45588 8.94844 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.004999 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.414932 B = 5599.348272 C = 6423.064205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.183 4.183 3 C 0.024 3.976 4 C -0.043 4.043 5 C -0.149 4.149 6 C -0.228 4.228 7 C -0.014 4.014 8 O -0.173 6.173 9 C 0.493 3.507 10 O -0.561 6.561 11 O -0.321 6.321 12 C 0.126 3.874 13 C 0.007 3.993 14 C -0.495 4.495 15 H 0.057 0.943 16 C 0.031 3.969 17 N -0.908 5.908 18 Si 0.954 3.046 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.185 4.185 23 C -0.189 4.189 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.174 0.826 29 H 0.181 0.819 30 H 0.243 0.757 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.258 0.742 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 16.680 -4.192 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.184 4.184 3 C 0.006 3.994 4 C -0.091 4.091 5 C -0.168 4.168 6 C -0.246 4.246 7 C -0.083 4.083 8 O -0.068 6.068 9 C 0.344 3.656 10 O -0.457 6.457 11 O -0.235 6.235 12 C 0.052 3.948 13 C 0.007 3.993 14 C -0.532 4.532 15 H 0.075 0.925 16 C -0.169 4.169 17 N -0.546 5.546 18 Si 0.779 3.221 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.223 4.223 23 C -0.226 4.226 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.182 0.818 28 H 0.192 0.808 29 H 0.199 0.801 30 H 0.259 0.741 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.005 16.494 -4.052 17.103 hybrid contribution -0.138 -0.400 0.706 0.823 sum -2.143 16.094 -3.346 16.578 Atomic orbital electron populations 1.20651 0.88897 1.02760 1.02841 1.20347 0.98353 0.90114 1.09571 1.20681 0.99840 0.87577 0.91348 1.19684 0.81045 0.95152 1.13266 1.22765 1.02219 0.90347 1.01515 1.22169 0.91322 1.02344 1.08796 1.25333 1.02604 0.79507 1.00842 1.84349 1.23540 1.29005 1.69930 1.20148 0.86003 0.86405 0.73088 1.90759 1.16361 1.89274 1.49324 1.86191 1.42164 1.14547 1.80644 1.22186 0.91173 0.80520 1.00900 1.19069 0.96531 0.89891 0.93849 1.20693 0.94545 1.41467 0.96542 0.92528 1.25612 0.98876 0.93424 0.98942 1.69961 1.28164 1.43736 1.12782 0.85614 0.80307 0.77647 0.78499 1.19980 1.21222 1.19088 1.22988 0.97726 0.96899 1.04720 1.22970 1.01450 1.05665 0.92537 0.89421 0.92279 0.90856 0.81846 0.80817 0.80119 0.74076 0.95994 0.89979 0.93208 0.90122 0.89637 0.89538 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.27 8.30 71.24 0.59 -2.68 16 2 C -0.18 -6.86 5.89 -19.69 -0.12 -6.97 16 3 C 0.02 0.73 9.38 22.50 0.21 0.94 16 4 C -0.04 -1.09 6.72 23.02 0.15 -0.94 16 5 C -0.15 -2.85 10.90 22.71 0.25 -2.61 16 6 C -0.23 -3.35 10.87 22.06 0.24 -3.11 16 7 C -0.01 -0.21 12.06 67.12 0.81 0.60 16 8 O -0.17 -4.08 7.25 -6.15 -0.04 -4.12 16 9 C 0.49 22.96 7.64 68.57 0.52 23.48 16 10 O -0.56 -27.70 15.82 19.14 0.30 -27.40 16 11 O -0.32 -16.54 8.48 -59.17 -0.50 -17.04 16 12 C 0.13 6.65 4.39 71.98 0.32 6.97 16 13 C 0.01 0.36 2.18 -52.93 -0.12 0.24 16 14 C -0.50 -27.32 8.76 25.60 0.22 -27.10 16 15 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.03 1.71 5.31 84.65 0.45 2.16 16 17 N -0.91 -52.14 10.35 21.45 0.22 -51.91 16 18 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 C -0.19 -8.28 9.96 30.62 0.30 -7.98 16 23 C -0.19 -8.19 9.92 30.62 0.30 -7.89 16 24 H 0.09 2.58 7.22 -2.38 -0.02 2.56 16 25 H 0.06 2.34 7.05 -2.39 -0.02 2.33 16 26 H 0.07 2.39 7.44 -2.39 -0.02 2.37 16 27 H 0.16 4.67 7.49 -2.91 -0.02 4.65 16 28 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 30 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.02 1.11 7.89 -2.39 -0.02 1.09 16 32 H 0.08 4.81 5.98 -2.39 -0.01 4.79 16 33 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 34 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.09 3.74 8.14 -2.38 -0.02 3.72 16 36 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -68.06 320.98 7.22 -60.84 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 1.07 Total: 18.91 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 4.14 Total: -24.88 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.22 Total: -51.91 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.24 Total: -48.56 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.06 7.22 -60.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847655026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.989 kcal (2) G-P(sol) polarization free energy of solvation -68.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds