Wall clock time and date at job start Mon Mar 30 2020 01:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35760 * 119.99930 * 2 1 4 4 C 1.41530 * 119.99989 * 186.06326 * 3 2 1 5 5 C 1.38005 * 126.10683 * 185.89346 * 4 3 2 6 6 C 1.40277 * 106.52548 * 179.97438 * 5 4 3 7 7 C 1.35185 * 107.21090 * 0.02562 * 6 5 4 8 8 O 1.34007 * 109.03819 * 359.73120 * 7 6 5 9 9 C 1.41285 * 120.00217 * 179.97438 * 2 1 3 10 10 O 1.21704 * 120.00128 * 79.04323 * 9 2 1 11 11 O 1.35003 * 119.99935 * 259.04588 * 9 2 1 12 12 C 1.42904 * 117.00228 * 174.60588 * 11 9 2 13 13 C 1.50700 * 112.84666 * 298.84465 * 12 11 9 14 14 H 1.07996 * 120.00173 * 119.21053 * 13 12 11 15 15 C 1.37888 * 120.00139 * 299.21323 * 13 12 11 16 16 N 1.31515 * 119.99611 * 1.98016 * 15 13 12 17 17 Si 1.86790 * 120.00094 * 181.98069 * 15 13 12 18 18 H 1.48505 * 109.47163 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47343 * 300.00128 * 17 15 13 20 20 H 1.48503 * 109.47168 * 59.99897 * 17 15 13 21 21 C 1.53776 * 113.61404 * 70.03627 * 12 11 9 22 22 C 1.53955 * 87.01851 * 89.23391 * 21 12 11 23 23 C 1.53770 * 113.61586 * 167.64909 * 12 11 9 24 24 H 1.09001 * 109.47394 * 270.00436 * 1 2 3 25 25 H 1.08997 * 109.47296 * 30.00194 * 1 2 3 26 26 H 1.09000 * 109.46716 * 150.00412 * 1 2 3 27 27 H 1.07999 * 120.00174 * 6.06309 * 3 2 1 28 28 H 1.08000 * 126.73293 * 359.96949 * 5 4 3 29 29 H 1.07999 * 126.39646 * 180.02562 * 6 5 4 30 30 H 1.07997 * 125.48135 * 180.02562 * 7 6 5 31 31 H 0.97004 * 120.00153 * 354.69749 * 16 15 13 32 32 H 1.09001 * 113.61672 * 203.75306 * 21 12 11 33 33 H 1.09006 * 113.61453 * 334.65791 * 21 12 11 34 34 H 1.09008 * 113.53574 * 270.81065 * 22 21 12 35 35 H 1.08999 * 113.74340 * 139.94578 * 22 21 12 36 36 H 1.09004 * 113.62101 * 25.34598 * 23 12 11 37 37 H 1.09006 * 113.61641 * 156.16984 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1857 1.1757 0.0000 4 6 3.5951 1.1792 -0.1295 5 6 4.4181 2.2826 -0.0314 6 6 5.7287 1.8213 -0.2244 7 6 5.6571 0.4869 -0.4284 8 8 4.3746 0.1032 -0.3653 9 6 2.2134 -1.2235 0.0005 10 8 2.3442 -1.8512 -1.0339 11 8 2.7433 -1.6965 1.1486 12 6 3.3409 -2.9937 1.1014 13 6 2.3633 -4.0746 0.7177 14 1 2.5286 -4.6603 -0.1744 15 6 1.2578 -4.3158 1.5058 16 7 1.0358 -3.5769 2.5708 17 14 0.0758 -5.6919 1.0607 18 1 -1.0217 -5.7442 2.0597 19 1 -0.4930 -5.4392 -0.2876 20 1 0.8028 -6.9869 1.0564 21 6 4.6537 -3.0385 0.3018 22 6 5.3739 -2.6986 1.6194 23 6 4.1766 -3.3328 2.3468 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6503 2.1084 0.0988 28 1 4.1129 3.3014 0.1568 29 1 6.6272 2.4204 -0.2123 30 1 6.4985 -0.1659 -0.6082 31 1 1.6881 -2.9137 2.8457 32 1 4.8957 -4.0282 -0.0853 33 1 4.7317 -2.2566 -0.4537 34 1 5.4752 -1.6278 1.7965 35 1 6.3085 -3.2413 1.7613 36 1 3.8700 -2.7883 3.2400 37 1 4.2867 -4.4032 2.5207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847705088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:33 Heat of formation + Delta-G solvation = -32.918784 kcal Electronic energy + Delta-G solvation = -22670.104690 eV Core-core repulsion = 19380.651699 eV Total energy + Delta-G solvation = -3289.452991 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.31053 -39.71404 -37.48375 -34.69719 -34.15457 -32.83977 -32.34672 -30.23612 -26.42524 -25.94941 -24.70968 -24.13864 -22.33213 -21.44450 -20.81503 -19.19414 -18.25906 -17.67300 -16.88564 -15.86329 -15.60084 -15.25936 -14.94998 -14.22190 -14.01191 -13.72477 -13.27337 -12.98475 -12.94744 -12.70778 -12.64978 -12.36268 -12.18064 -11.76113 -11.55958 -11.31744 -10.82597 -10.49971 -10.38498 -10.21506 -10.10927 -10.05164 -9.98288 -9.68111 -9.36796 -8.92748 -8.44274 -8.08080 -7.57210 -6.35710 -4.14016 0.92854 2.42981 3.02625 3.04755 3.42239 3.44309 3.46138 3.63596 4.13399 4.51244 4.84480 5.07540 5.11661 5.31149 5.39768 5.55452 5.61837 5.64314 5.73209 5.78056 5.87719 5.90816 6.00559 6.11885 6.20738 6.33341 6.34558 6.48291 6.52206 6.71850 6.74241 6.79137 6.94405 7.14659 7.32177 7.41842 7.74965 8.18906 8.43892 8.83581 9.08340 9.62136 11.01576 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.007696 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.394298 B = 3637.603334 C = 4450.931727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.078 4.078 4 C 0.012 3.988 5 C -0.192 4.192 6 C -0.220 4.220 7 C -0.028 4.028 8 O -0.148 6.148 9 C 0.513 3.487 10 O -0.492 6.492 11 O -0.337 6.337 12 C 0.213 3.787 13 C -0.598 4.598 14 H 0.057 0.943 15 C 0.030 3.970 16 N -0.894 5.894 17 Si 1.063 2.937 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.286 1.286 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.111 4.111 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.157 0.843 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.198 0.802 31 H 0.279 0.721 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 10.534 -2.856 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.096 4.096 4 C -0.038 4.038 5 C -0.211 4.211 6 C -0.239 4.239 7 C -0.097 4.097 8 O -0.043 6.043 9 C 0.356 3.644 10 O -0.381 6.381 11 O -0.254 6.254 12 C 0.179 3.821 13 C -0.635 4.635 14 H 0.075 0.925 15 C -0.177 4.177 16 N -0.530 5.530 17 Si 0.891 3.109 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.212 1.212 21 C -0.183 4.183 22 C -0.184 4.184 23 C -0.148 4.148 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.174 0.826 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.215 0.785 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.557 9.306 -2.736 10.331 hybrid contribution 1.688 0.804 -0.498 1.935 sum 5.246 10.110 -3.234 11.840 Atomic orbital electron populations 1.20740 0.88599 1.03449 1.03471 1.20809 0.97679 0.92299 0.99155 1.20197 0.88168 0.98123 1.03083 1.19954 0.92029 0.85089 1.06739 1.22083 0.92477 0.98875 1.07712 1.21622 0.98312 0.94932 1.09035 1.24171 0.84644 0.96062 1.04831 1.84260 1.17202 1.34799 1.68005 1.19127 0.77065 0.84918 0.83260 1.90826 1.55851 1.58099 1.33293 1.86153 1.67065 1.36794 1.35343 1.20319 0.89832 0.78928 0.93069 1.22086 1.11392 1.18005 1.12030 0.92475 1.25823 0.97826 1.00078 0.93986 1.70690 1.36724 1.21256 1.24313 0.83645 0.76099 0.75306 0.75882 1.20679 1.21386 1.21230 1.23374 0.98171 1.00926 0.95874 1.22957 0.97103 0.99701 0.98678 1.22960 0.94415 1.00245 0.97228 0.89722 0.90770 0.90459 0.82584 0.83275 0.83510 0.78531 0.90918 0.90537 0.92155 0.91450 0.92881 0.92582 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 36.00 0.36 -1.35 16 2 C -0.10 -1.90 5.71 -104.35 -0.60 -2.50 16 3 C -0.08 -1.25 9.59 -39.22 -0.38 -1.62 16 4 C 0.01 0.21 6.68 -38.41 -0.26 -0.05 16 5 C -0.19 -2.69 10.90 -38.90 -0.42 -3.11 16 6 C -0.22 -2.91 10.87 -39.90 -0.43 -3.34 16 7 C -0.03 -0.41 12.06 29.65 0.36 -0.06 16 8 O -0.15 -2.82 6.76 -8.98 -0.06 -2.88 16 9 C 0.51 12.46 3.85 31.89 0.12 12.59 16 10 O -0.49 -13.30 15.14 -21.94 -0.33 -13.64 16 11 O -0.34 -8.65 8.69 -44.73 -0.39 -9.04 16 12 C 0.21 5.49 0.10 -90.97 -0.01 5.48 16 13 C -0.60 -17.12 7.23 -34.44 -0.25 -17.37 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.03 0.86 5.40 -17.82 -0.10 0.77 16 16 N -0.89 -26.37 13.51 55.43 0.75 -25.62 16 17 Si 1.06 25.46 29.90 -169.99 -5.08 20.37 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.15 -3.32 6.89 -25.83 -0.18 -3.50 16 22 C -0.15 -2.93 8.02 -25.83 -0.21 -3.13 16 23 C -0.11 -2.56 6.70 -25.92 -0.17 -2.73 16 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 26 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 27 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.28 8.26 5.79 -40.82 -0.24 8.03 16 32 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 33 H 0.06 1.38 5.96 -51.93 -0.31 1.07 16 34 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.31 7.80 -51.93 -0.41 0.90 16 37 H 0.09 2.00 8.09 -51.93 -0.42 1.58 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -34.01 315.73 -7.31 -41.33 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.80 Total: 4.65 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.16 Total: -19.93 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.75 Total: -25.62 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.78 Total: -25.55 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.01 -7.31 -41.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847705088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.408 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds