Wall clock time and date at job start Mon Mar 30 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35760 * 119.99930 * 2 1 4 4 C 1.41530 * 119.99989 * 186.06326 * 3 2 1 5 5 C 1.38005 * 126.10683 * 185.89346 * 4 3 2 6 6 C 1.40277 * 106.52548 * 179.97438 * 5 4 3 7 7 C 1.35185 * 107.21090 * 0.02562 * 6 5 4 8 8 O 1.34007 * 109.03819 * 359.73120 * 7 6 5 9 9 C 1.41285 * 120.00217 * 179.97438 * 2 1 3 10 10 O 1.21704 * 120.00128 * 79.04323 * 9 2 1 11 11 O 1.35003 * 119.99935 * 259.04588 * 9 2 1 12 12 C 1.42904 * 117.00228 * 174.60588 * 11 9 2 13 13 C 1.50700 * 112.84666 * 298.84465 * 12 11 9 14 14 H 1.07996 * 120.00173 * 119.21053 * 13 12 11 15 15 C 1.37888 * 120.00139 * 299.21323 * 13 12 11 16 16 N 1.31515 * 119.99611 * 1.98016 * 15 13 12 17 17 Si 1.86790 * 120.00094 * 181.98069 * 15 13 12 18 18 H 1.48505 * 109.47163 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47343 * 300.00128 * 17 15 13 20 20 H 1.48503 * 109.47168 * 59.99897 * 17 15 13 21 21 C 1.53776 * 113.61404 * 70.03627 * 12 11 9 22 22 C 1.53955 * 87.01851 * 89.23391 * 21 12 11 23 23 C 1.53770 * 113.61586 * 167.64909 * 12 11 9 24 24 H 1.09001 * 109.47394 * 270.00436 * 1 2 3 25 25 H 1.08997 * 109.47296 * 30.00194 * 1 2 3 26 26 H 1.09000 * 109.46716 * 150.00412 * 1 2 3 27 27 H 1.07999 * 120.00174 * 6.06309 * 3 2 1 28 28 H 1.08000 * 126.73293 * 359.96949 * 5 4 3 29 29 H 1.07999 * 126.39646 * 180.02562 * 6 5 4 30 30 H 1.07997 * 125.48135 * 180.02562 * 7 6 5 31 31 H 0.97004 * 120.00153 * 354.69749 * 16 15 13 32 32 H 1.09001 * 113.61672 * 203.75306 * 21 12 11 33 33 H 1.09006 * 113.61453 * 334.65791 * 21 12 11 34 34 H 1.09008 * 113.53574 * 270.81065 * 22 21 12 35 35 H 1.08999 * 113.74340 * 139.94578 * 22 21 12 36 36 H 1.09004 * 113.62101 * 25.34598 * 23 12 11 37 37 H 1.09006 * 113.61641 * 156.16984 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1857 1.1757 0.0000 4 6 3.5951 1.1792 -0.1295 5 6 4.4181 2.2826 -0.0314 6 6 5.7287 1.8213 -0.2244 7 6 5.6571 0.4869 -0.4284 8 8 4.3746 0.1032 -0.3653 9 6 2.2134 -1.2235 0.0005 10 8 2.3442 -1.8512 -1.0339 11 8 2.7433 -1.6965 1.1486 12 6 3.3409 -2.9937 1.1014 13 6 2.3633 -4.0746 0.7177 14 1 2.5286 -4.6603 -0.1744 15 6 1.2578 -4.3158 1.5058 16 7 1.0358 -3.5769 2.5708 17 14 0.0758 -5.6919 1.0607 18 1 -1.0217 -5.7442 2.0597 19 1 -0.4930 -5.4392 -0.2876 20 1 0.8028 -6.9869 1.0564 21 6 4.6537 -3.0385 0.3018 22 6 5.3739 -2.6986 1.6194 23 6 4.1766 -3.3328 2.3468 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6503 2.1084 0.0988 28 1 4.1129 3.3014 0.1568 29 1 6.6272 2.4204 -0.2123 30 1 6.4985 -0.1659 -0.6082 31 1 1.6881 -2.9137 2.8457 32 1 4.8957 -4.0282 -0.0853 33 1 4.7317 -2.2566 -0.4537 34 1 5.4752 -1.6278 1.7965 35 1 6.3085 -3.2413 1.7613 36 1 3.8700 -2.7883 3.2400 37 1 4.2867 -4.4032 2.5207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847705088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:32 Heat of formation + Delta-G solvation = -52.389101 kcal Electronic energy + Delta-G solvation = -22670.948987 eV Core-core repulsion = 19380.651699 eV Total energy + Delta-G solvation = -3290.297287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.49966 -41.54499 -39.24877 -36.13360 -36.04526 -34.51363 -33.99124 -31.42390 -28.15984 -27.46774 -26.54187 -25.82447 -24.14204 -22.61955 -22.09839 -20.82404 -20.07465 -19.37494 -18.52202 -17.32911 -17.02749 -16.89119 -16.64977 -15.90869 -15.74118 -15.52666 -14.78459 -14.59375 -14.34909 -14.17683 -13.98570 -13.77310 -13.42585 -13.31023 -13.19651 -12.81440 -12.75029 -12.35678 -12.30506 -12.02266 -11.93656 -11.84331 -11.45346 -11.20058 -10.88123 -10.74033 -10.55690 -10.10941 -8.79453 -8.60916 -6.39832 -0.33743 1.27910 1.42047 1.46114 1.52854 1.73458 1.88249 2.21137 2.47101 2.51580 3.16771 3.66280 3.81348 3.83296 4.01008 4.05240 4.05412 4.20357 4.32246 4.46124 4.54897 4.64054 4.69480 4.71682 4.87645 4.90077 4.96573 4.97966 5.02860 5.09965 5.20682 5.30943 5.36340 5.57165 5.64659 5.76143 6.08648 6.17765 6.27190 6.59613 7.19877 7.43162 8.75530 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.007696 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.394298 B = 3637.603334 C = 4450.931727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.171 4.171 3 C -0.029 4.029 4 C -0.051 4.051 5 C -0.159 4.159 6 C -0.215 4.215 7 C -0.041 4.041 8 O -0.189 6.189 9 C 0.517 3.483 10 O -0.539 6.539 11 O -0.347 6.347 12 C 0.191 3.809 13 C -0.615 4.615 14 H 0.032 0.968 15 C -0.011 4.011 16 N -0.911 5.911 17 Si 1.102 2.898 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.143 4.143 22 C -0.115 4.115 23 C -0.112 4.112 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.044 0.956 27 H 0.208 0.792 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.217 0.783 31 H 0.269 0.731 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.258 13.032 -2.636 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.172 4.172 3 C -0.046 4.046 4 C -0.100 4.100 5 C -0.177 4.177 6 C -0.234 4.234 7 C -0.110 4.110 8 O -0.085 6.085 9 C 0.363 3.637 10 O -0.430 6.430 11 O -0.263 6.263 12 C 0.156 3.844 13 C -0.652 4.652 14 H 0.051 0.949 15 C -0.214 4.214 16 N -0.547 5.547 17 Si 0.925 3.075 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.192 1.192 21 C -0.181 4.181 22 C -0.152 4.152 23 C -0.150 4.150 24 H 0.099 0.901 25 H 0.138 0.862 26 H 0.063 0.937 27 H 0.225 0.775 28 H 0.205 0.795 29 H 0.201 0.799 30 H 0.234 0.766 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.815 11.822 -2.504 13.008 hybrid contribution 1.520 0.191 -0.629 1.656 sum 6.335 12.013 -3.133 13.938 Atomic orbital electron populations 1.20685 0.86801 1.04031 1.03444 1.20833 0.98860 0.91210 1.06280 1.20862 0.88138 0.98668 0.96980 1.20528 0.92914 0.85936 1.10594 1.22650 0.92092 0.99562 1.03413 1.22107 0.99451 0.94340 1.07464 1.24898 0.84145 0.97732 1.04189 1.84239 1.18788 1.36527 1.68966 1.19966 0.75900 0.85871 0.81980 1.90764 1.57610 1.60146 1.34492 1.86126 1.67507 1.36280 1.36414 1.20502 0.90228 0.78539 0.95181 1.22285 1.12740 1.19073 1.11113 0.94948 1.27030 0.99314 1.01483 0.93544 1.70790 1.36724 1.21929 1.25230 0.83138 0.74855 0.73817 0.75722 1.19845 1.21267 1.19172 1.23289 0.97391 1.00491 0.96925 1.22767 0.97131 1.00253 0.95073 1.22919 0.95731 1.00111 0.96211 0.90107 0.86234 0.93727 0.77501 0.79482 0.79906 0.76607 0.92044 0.91105 0.92690 0.90704 0.89290 0.93384 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.03 10.01 71.23 0.71 -2.32 16 2 C -0.17 -6.68 5.71 -19.69 -0.11 -6.79 16 3 C -0.03 -0.88 9.59 22.51 0.22 -0.66 16 4 C -0.05 -1.63 6.68 23.03 0.15 -1.48 16 5 C -0.16 -3.74 10.90 22.71 0.25 -3.49 16 6 C -0.22 -4.81 10.87 22.06 0.24 -4.57 16 7 C -0.04 -1.15 12.06 67.12 0.81 -0.34 16 8 O -0.19 -7.08 6.76 7.02 0.05 -7.03 16 9 C 0.52 26.13 3.85 68.57 0.26 26.39 16 10 O -0.54 -30.82 15.14 21.57 0.33 -30.50 16 11 O -0.35 -18.45 8.69 -55.96 -0.49 -18.93 16 12 C 0.19 10.14 0.10 -11.02 0.00 10.14 16 13 C -0.61 -36.77 7.23 25.60 0.19 -36.58 16 14 H 0.03 2.03 7.81 -2.91 -0.02 2.01 16 15 C -0.01 -0.66 5.40 84.66 0.46 -0.20 16 16 N -0.91 -55.32 13.51 21.45 0.29 -55.03 16 17 Si 1.10 52.58 29.90 68.60 2.05 54.63 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 C -0.14 -6.64 6.89 31.18 0.21 -6.43 16 22 C -0.12 -4.46 8.02 31.18 0.25 -4.21 16 23 C -0.11 -5.25 6.70 31.12 0.21 -5.04 16 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.12 2.62 8.08 -2.39 -0.02 2.60 16 26 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 27 H 0.21 3.77 8.06 -2.91 -0.02 3.75 16 28 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.22 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.27 16.52 5.79 -92.71 -0.54 15.98 16 32 H 0.07 3.28 8.09 -2.39 -0.02 3.26 16 33 H 0.05 2.58 5.96 -2.38 -0.01 2.57 16 34 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 35 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.05 2.28 7.80 -2.38 -0.02 2.26 16 37 H 0.08 3.82 8.09 -2.38 -0.02 3.80 16 Total: -1.00 -79.34 315.73 7.37 -71.97 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.30 Total: 20.46 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 3.85 Total: -35.57 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.29 Total: -55.03 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: -0.11 Total: -56.46 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 2.05 Total: 54.63 kcal Total: -79.34 7.37 -71.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847705088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.579 kcal (2) G-P(sol) polarization free energy of solvation -79.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds