Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35759 * 120.00010 * 2 1 4 4 C 1.41525 * 120.00207 * 6.60074 * 3 2 1 5 5 C 1.38000 * 126.10759 * 185.90867 * 4 3 2 6 6 C 1.40280 * 106.52225 * 179.88299 * 5 4 3 7 7 C 1.35179 * 107.21258 * 0.37768 * 6 5 4 8 8 O 1.34003 * 109.04005 * 359.76528 * 7 6 5 9 9 C 1.41292 * 119.99968 * 180.02562 * 2 1 3 10 10 O 1.21712 * 120.00181 * 180.02562 * 9 2 1 11 11 O 1.35001 * 119.99953 * 359.97438 * 9 2 1 12 12 C 1.42900 * 116.99933 * 174.81047 * 11 9 2 13 13 C 1.50700 * 112.85005 * 303.34904 * 12 11 9 14 14 H 1.07995 * 120.00008 * 114.96230 * 13 12 11 15 15 C 1.37872 * 119.99863 * 295.23268 * 13 12 11 16 16 N 1.31518 * 119.99914 * 4.77458 * 15 13 12 17 17 Si 1.86798 * 120.00111 * 184.77033 * 15 13 12 18 18 H 1.48500 * 109.46968 * 59.99957 * 17 15 13 19 19 H 1.48493 * 109.47446 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47243 * 300.00273 * 17 15 13 21 21 C 1.53786 * 113.61226 * 74.54632 * 12 11 9 22 22 C 1.53951 * 87.02098 * 89.22767 * 21 12 11 23 23 C 1.53779 * 113.61172 * 172.14948 * 12 11 9 24 24 H 1.08999 * 109.47262 * 275.40923 * 1 2 3 25 25 H 1.09005 * 109.47065 * 35.40655 * 1 2 3 26 26 H 1.09001 * 109.47558 * 155.40639 * 1 2 3 27 27 H 1.08001 * 119.99837 * 186.59457 * 3 2 1 28 28 H 1.07997 * 126.73802 * 0.02562 * 5 4 3 29 29 H 1.08007 * 126.39622 * 180.17684 * 6 5 4 30 30 H 1.08002 * 125.47875 * 179.76060 * 7 6 5 31 31 H 0.97004 * 119.99685 * 184.99680 * 16 15 13 32 32 H 1.09003 * 113.61045 * 203.74819 * 21 12 11 33 33 H 1.09003 * 113.61380 * 334.64728 * 21 12 11 34 34 H 1.08996 * 113.53941 * 270.81123 * 22 21 12 35 35 H 1.08995 * 113.74331 * 139.93999 * 22 21 12 36 36 H 1.08996 * 113.61548 * 25.35093 * 23 12 11 37 37 H 1.09001 * 113.61186 * 156.17008 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 1.4852 2.3973 0.1409 5 6 2.0285 3.6622 0.0441 6 6 0.9749 4.5656 0.2479 7 6 -0.1419 3.8354 0.4645 8 8 0.1678 2.5332 0.3997 9 6 2.2134 -1.2236 -0.0005 10 8 3.4305 -1.2237 -0.0001 11 8 1.5384 -2.3928 -0.0005 12 6 2.3121 -3.5886 -0.1163 13 6 3.1767 -3.6091 -1.3504 14 1 4.2525 -3.6073 -1.2562 15 6 2.5942 -3.6244 -2.6000 16 7 1.2880 -3.5263 -2.7178 17 14 3.6602 -3.7842 -4.1256 18 1 4.4190 -5.0594 -4.0678 19 1 2.7985 -3.7747 -5.3348 20 1 4.6108 -2.6450 -4.1868 21 6 3.0668 -3.9609 1.1709 22 6 1.8118 -4.7518 1.5824 23 6 1.4924 -4.8743 0.0831 24 1 -0.3634 0.0969 1.0231 25 1 -0.3633 0.8376 -0.5954 26 1 -0.3634 -0.9344 -0.4277 27 1 3.2604 1.1788 -0.1074 28 1 3.0615 3.9082 -0.1525 29 1 1.0437 5.6434 0.2373 30 1 -1.1255 4.2369 0.6587 31 1 0.8721 -3.6098 -3.5902 32 1 3.9413 -4.5884 0.9982 33 1 3.2775 -3.1078 1.8158 34 1 1.0851 -4.1577 2.1364 35 1 2.0317 -5.7059 2.0613 36 1 0.4338 -4.7576 -0.1488 37 1 1.9348 -5.7517 -0.3886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847705089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -29.565141 kcal Electronic energy + Delta-G solvation = -21564.309140 eV Core-core repulsion = 18275.001574 eV Total energy + Delta-G solvation = -3289.307566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.50774 -39.59609 -37.37460 -34.68461 -34.08682 -33.09633 -32.31192 -29.84345 -26.49080 -26.46546 -24.56313 -24.16309 -22.32989 -21.73085 -20.76437 -19.07800 -18.07501 -16.98513 -16.62034 -16.11617 -15.80738 -15.17948 -14.87793 -14.42077 -14.36467 -13.90947 -13.41596 -13.02902 -12.77159 -12.69176 -12.47690 -12.32158 -11.70940 -11.48424 -11.30734 -11.28845 -11.11881 -10.85450 -10.48664 -10.29366 -10.06891 -9.96457 -9.90334 -9.70653 -9.35876 -8.73331 -8.48259 -8.32643 -7.68046 -6.05812 -4.16259 0.69315 2.21372 2.85776 3.03985 3.30973 3.35143 3.39703 3.95289 4.19032 4.40923 4.86698 4.94630 5.10983 5.28365 5.31872 5.61877 5.68403 5.74547 5.77887 5.84796 5.92498 6.06858 6.09169 6.17392 6.31733 6.38374 6.45368 6.47229 6.64595 6.82376 6.86041 6.89213 7.14423 7.19643 7.29042 7.58307 7.81348 7.91698 8.33633 8.86015 9.19961 9.53296 10.98760 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.005456 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.167832 B = 5130.431153 C = 5816.670245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C -0.046 4.046 4 C 0.022 3.978 5 C -0.187 4.187 6 C -0.215 4.215 7 C -0.043 4.043 8 O -0.156 6.156 9 C 0.501 3.499 10 O -0.503 6.503 11 O -0.323 6.323 12 C 0.230 3.770 13 C -0.521 4.521 14 H 0.065 0.935 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.094 4.094 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.201 0.799 31 H 0.262 0.738 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.905 10.814 6.185 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.111 4.111 3 C -0.064 4.064 4 C -0.028 4.028 5 C -0.206 4.206 6 C -0.234 4.234 7 C -0.112 4.112 8 O -0.051 6.051 9 C 0.347 3.653 10 O -0.395 6.395 11 O -0.239 6.239 12 C 0.195 3.805 13 C -0.558 4.558 14 H 0.083 0.917 15 C -0.131 4.131 16 N -0.503 5.503 17 Si 0.717 3.283 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.191 4.191 22 C -0.189 4.189 23 C -0.132 4.132 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.176 0.824 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.218 0.782 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.908 10.564 6.105 12.812 hybrid contribution 0.732 0.193 -1.032 1.280 sum -3.176 10.757 5.073 12.310 Atomic orbital electron populations 1.20902 0.90121 1.03866 1.02175 1.20741 0.97551 0.91875 1.00978 1.20502 0.99703 0.87461 0.98776 1.19854 0.81095 0.95214 1.06593 1.22242 1.00736 0.91050 1.06597 1.21690 0.92828 1.00688 1.08195 1.24256 1.00615 0.80663 1.05679 1.84361 1.25423 1.27004 1.68359 1.19097 0.86266 0.85204 0.74744 1.90787 1.14893 1.88857 1.44927 1.86082 1.42310 1.14417 1.81048 1.20175 0.88401 0.79835 0.92066 1.21230 0.93150 1.51824 0.89618 0.91712 1.25046 0.95041 0.93991 0.98998 1.70041 1.08884 1.47052 1.24368 0.86695 0.80551 0.78934 0.82159 1.19981 1.21212 1.20088 1.23494 0.97051 0.99246 0.99330 1.23014 0.98688 0.99191 0.98045 1.22716 1.00457 0.97584 0.92450 0.91121 0.91152 0.89459 0.82365 0.83005 0.83438 0.78213 0.92836 0.90213 0.93176 0.91388 0.92964 0.91939 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 8.39 36.00 0.30 -1.68 16 2 C -0.11 -2.17 5.89 -104.35 -0.61 -2.78 16 3 C -0.05 -0.79 9.38 -39.22 -0.37 -1.16 16 4 C 0.02 0.33 6.59 -38.42 -0.25 0.07 16 5 C -0.19 -2.36 10.90 -38.90 -0.42 -2.79 16 6 C -0.21 -2.30 10.87 -39.90 -0.43 -2.73 16 7 C -0.04 -0.46 12.06 29.64 0.36 -0.10 16 8 O -0.16 -2.17 7.40 4.71 0.03 -2.13 16 9 C 0.50 12.00 7.09 31.89 0.23 12.23 16 10 O -0.50 -13.05 14.38 -19.43 -0.28 -13.33 16 11 O -0.32 -8.16 8.71 -41.32 -0.36 -8.52 16 12 C 0.23 5.85 0.32 -90.96 -0.03 5.82 16 13 C -0.52 -14.56 6.92 -34.44 -0.24 -14.80 16 14 H 0.06 1.87 7.82 -52.49 -0.41 1.46 16 15 C 0.07 2.06 5.37 -17.82 -0.10 1.97 16 16 N -0.87 -24.46 12.78 55.43 0.71 -23.75 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.15 -3.43 6.99 -25.83 -0.18 -3.61 16 22 C -0.15 -3.00 8.02 -25.83 -0.21 -3.21 16 23 C -0.09 -2.16 7.06 -25.92 -0.18 -2.34 16 24 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 25 H 0.07 1.13 6.14 -51.93 -0.32 0.81 16 26 H 0.09 1.67 7.42 -51.93 -0.39 1.28 16 27 H 0.16 2.65 7.48 -52.49 -0.39 2.26 16 28 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.20 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 32 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 33 H 0.05 1.12 7.77 -51.93 -0.40 0.71 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.87 8.09 -51.93 -0.42 1.45 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -31.40 317.81 -7.11 -38.52 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.84 Total: 2.93 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.14 Total: -15.10 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.71 Total: -23.75 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.60 Total: -23.98 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.40 -7.11 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847705089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.952 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds