Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35759 * 120.00010 * 2 1 4 4 C 1.41525 * 120.00207 * 6.60074 * 3 2 1 5 5 C 1.38000 * 126.10759 * 185.90867 * 4 3 2 6 6 C 1.40280 * 106.52225 * 179.88299 * 5 4 3 7 7 C 1.35179 * 107.21258 * 0.37768 * 6 5 4 8 8 O 1.34003 * 109.04005 * 359.76528 * 7 6 5 9 9 C 1.41292 * 119.99968 * 180.02562 * 2 1 3 10 10 O 1.21712 * 120.00181 * 180.02562 * 9 2 1 11 11 O 1.35001 * 119.99953 * 359.97438 * 9 2 1 12 12 C 1.42900 * 116.99933 * 174.81047 * 11 9 2 13 13 C 1.50700 * 112.85005 * 303.34904 * 12 11 9 14 14 H 1.07995 * 120.00008 * 114.96230 * 13 12 11 15 15 C 1.37872 * 119.99863 * 295.23268 * 13 12 11 16 16 N 1.31518 * 119.99914 * 4.77458 * 15 13 12 17 17 Si 1.86798 * 120.00111 * 184.77033 * 15 13 12 18 18 H 1.48500 * 109.46968 * 59.99957 * 17 15 13 19 19 H 1.48493 * 109.47446 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47243 * 300.00273 * 17 15 13 21 21 C 1.53786 * 113.61226 * 74.54632 * 12 11 9 22 22 C 1.53951 * 87.02098 * 89.22767 * 21 12 11 23 23 C 1.53779 * 113.61172 * 172.14948 * 12 11 9 24 24 H 1.08999 * 109.47262 * 275.40923 * 1 2 3 25 25 H 1.09005 * 109.47065 * 35.40655 * 1 2 3 26 26 H 1.09001 * 109.47558 * 155.40639 * 1 2 3 27 27 H 1.08001 * 119.99837 * 186.59457 * 3 2 1 28 28 H 1.07997 * 126.73802 * 0.02562 * 5 4 3 29 29 H 1.08007 * 126.39622 * 180.17684 * 6 5 4 30 30 H 1.08002 * 125.47875 * 179.76060 * 7 6 5 31 31 H 0.97004 * 119.99685 * 184.99680 * 16 15 13 32 32 H 1.09003 * 113.61045 * 203.74819 * 21 12 11 33 33 H 1.09003 * 113.61380 * 334.64728 * 21 12 11 34 34 H 1.08996 * 113.53941 * 270.81123 * 22 21 12 35 35 H 1.08995 * 113.74331 * 139.93999 * 22 21 12 36 36 H 1.08996 * 113.61548 * 25.35093 * 23 12 11 37 37 H 1.09001 * 113.61186 * 156.17008 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 1.4852 2.3973 0.1409 5 6 2.0285 3.6622 0.0441 6 6 0.9749 4.5656 0.2479 7 6 -0.1419 3.8354 0.4645 8 8 0.1678 2.5332 0.3997 9 6 2.2134 -1.2236 -0.0005 10 8 3.4305 -1.2237 -0.0001 11 8 1.5384 -2.3928 -0.0005 12 6 2.3121 -3.5886 -0.1163 13 6 3.1767 -3.6091 -1.3504 14 1 4.2525 -3.6073 -1.2562 15 6 2.5942 -3.6244 -2.6000 16 7 1.2880 -3.5263 -2.7178 17 14 3.6602 -3.7842 -4.1256 18 1 4.4190 -5.0594 -4.0678 19 1 2.7985 -3.7747 -5.3348 20 1 4.6108 -2.6450 -4.1868 21 6 3.0668 -3.9609 1.1709 22 6 1.8118 -4.7518 1.5824 23 6 1.4924 -4.8743 0.0831 24 1 -0.3634 0.0969 1.0231 25 1 -0.3633 0.8376 -0.5954 26 1 -0.3634 -0.9344 -0.4277 27 1 3.2604 1.1788 -0.1074 28 1 3.0615 3.9082 -0.1525 29 1 1.0437 5.6434 0.2373 30 1 -1.1255 4.2369 0.6587 31 1 0.8721 -3.6098 -3.5902 32 1 3.9413 -4.5884 0.9982 33 1 3.2775 -3.1078 1.8158 34 1 1.0851 -4.1577 2.1364 35 1 2.0317 -5.7059 2.0613 36 1 0.4338 -4.7576 -0.1488 37 1 1.9348 -5.7517 -0.3886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847705089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -46.605672 kcal Electronic energy + Delta-G solvation = -21565.048073 eV Core-core repulsion = 18275.001574 eV Total energy + Delta-G solvation = -3290.046499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.50456 -41.40490 -39.12012 -36.15058 -35.92112 -34.41586 -34.07777 -30.99686 -28.49066 -27.72695 -26.37649 -25.76601 -24.05251 -22.68362 -22.05933 -20.49673 -19.89213 -18.82707 -17.74202 -17.43653 -17.17464 -16.90004 -16.85844 -16.25774 -15.83642 -15.44491 -15.18634 -14.36736 -14.01952 -13.92375 -13.62942 -13.53659 -13.44738 -13.29442 -13.12228 -12.96350 -12.78565 -12.64064 -12.35664 -12.02767 -11.80057 -11.66600 -11.43752 -11.17316 -10.76551 -10.69677 -10.46070 -10.25182 -8.83704 -8.15589 -6.32439 -0.61104 1.18245 1.34800 1.36841 1.44331 1.74488 2.07223 2.29643 2.37104 2.53165 3.15999 3.84750 3.94292 3.98770 4.01745 4.08817 4.16266 4.17238 4.33357 4.55739 4.63224 4.77605 4.84314 4.86746 4.91104 5.00326 5.05327 5.07135 5.09690 5.21730 5.35405 5.44369 5.52540 5.59868 5.67607 5.80932 5.95431 6.15036 6.41028 6.69708 7.29954 7.43988 8.87751 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.005456 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.167832 B = 5130.431153 C = 5816.670245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.174 4.174 3 C 0.003 3.997 4 C -0.035 4.035 5 C -0.159 4.159 6 C -0.226 4.226 7 C -0.017 4.017 8 O -0.171 6.171 9 C 0.498 3.502 10 O -0.543 6.543 11 O -0.334 6.334 12 C 0.204 3.796 13 C -0.538 4.538 14 H 0.043 0.957 15 C 0.033 3.967 16 N -0.888 5.888 17 Si 0.943 3.057 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.284 1.284 21 C -0.152 4.152 22 C -0.124 4.124 23 C -0.094 4.094 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.154 0.846 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.246 0.754 31 H 0.263 0.737 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 13.162 6.725 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.175 4.175 3 C -0.016 4.016 4 C -0.083 4.083 5 C -0.178 4.178 6 C -0.245 4.245 7 C -0.086 4.086 8 O -0.067 6.067 9 C 0.346 3.654 10 O -0.437 6.437 11 O -0.249 6.249 12 C 0.168 3.832 13 C -0.575 4.575 14 H 0.062 0.938 15 C -0.170 4.170 16 N -0.526 5.526 17 Si 0.768 3.232 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.210 1.210 21 C -0.189 4.189 22 C -0.162 4.162 23 C -0.131 4.131 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.172 0.828 28 H 0.187 0.813 29 H 0.199 0.801 30 H 0.262 0.738 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.745 12.901 6.649 15.269 hybrid contribution 0.992 -0.159 -1.160 1.535 sum -3.752 12.741 5.489 14.372 Atomic orbital electron populations 1.20673 0.88693 1.02592 1.02883 1.20589 0.98579 0.90648 1.07689 1.20592 0.99623 0.87938 0.93404 1.19622 0.82137 0.94899 1.11670 1.22717 1.02127 0.90522 1.02464 1.22139 0.91911 1.02225 1.08189 1.25327 1.02485 0.79335 1.01447 1.84339 1.24862 1.28904 1.68564 1.19789 0.86221 0.85940 0.73424 1.90737 1.16238 1.89239 1.47528 1.86057 1.42482 1.14972 1.81400 1.20463 0.89480 0.80758 0.92477 1.21375 0.92491 1.52254 0.91398 0.93833 1.25667 0.96160 0.93819 1.01315 1.70128 1.09877 1.47703 1.24864 0.85858 0.79087 0.78828 0.79398 1.18813 1.20126 1.21035 1.23441 0.98104 0.99429 0.97958 1.22866 0.96831 1.00411 0.96054 1.22661 0.99155 0.96282 0.95041 0.89915 0.90072 0.92398 0.82821 0.81319 0.80140 0.73846 0.92773 0.90135 0.93870 0.90408 0.89485 0.93176 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.27 8.39 71.23 0.60 -2.68 16 2 C -0.17 -7.11 5.89 -19.69 -0.12 -7.23 16 3 C 0.00 0.10 9.38 22.51 0.21 0.31 16 4 C -0.03 -0.98 6.59 23.02 0.15 -0.83 16 5 C -0.16 -3.51 10.90 22.71 0.25 -3.26 16 6 C -0.23 -3.75 10.87 22.06 0.24 -3.51 16 7 C -0.02 -0.28 12.06 67.11 0.81 0.52 16 8 O -0.17 -4.31 7.40 -6.07 -0.04 -4.35 16 9 C 0.50 25.09 7.09 68.57 0.49 25.57 16 10 O -0.54 -29.77 14.38 19.14 0.28 -29.49 16 11 O -0.33 -17.64 8.71 -59.20 -0.52 -18.16 16 12 C 0.20 10.71 0.32 -11.01 0.00 10.71 16 13 C -0.54 -31.27 6.92 25.60 0.18 -31.09 16 14 H 0.04 2.63 7.82 -2.91 -0.02 2.61 16 15 C 0.03 1.89 5.37 84.65 0.45 2.34 16 16 N -0.89 -51.60 12.78 21.45 0.27 -51.32 16 17 Si 0.94 45.34 29.54 68.60 2.03 47.36 16 18 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 21 C -0.15 -6.90 6.99 31.18 0.22 -6.68 16 22 C -0.12 -4.81 8.02 31.18 0.25 -4.56 16 23 C -0.09 -4.36 7.06 31.12 0.22 -4.14 16 24 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 25 H 0.08 2.60 6.14 -2.38 -0.01 2.58 16 26 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 27 H 0.15 5.31 7.48 -2.91 -0.02 5.29 16 28 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.25 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.26 14.53 8.32 -92.71 -0.77 13.76 16 32 H 0.08 3.57 8.09 -2.39 -0.02 3.55 16 33 H 0.04 1.98 7.77 -2.39 -0.02 1.96 16 34 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.08 3.62 8.09 -2.39 -0.02 3.60 16 Total: -1.00 -71.52 317.81 7.03 -64.49 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.07 Total: 15.99 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.94 Total: -24.52 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.27 Total: -51.32 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.29 Total: -52.01 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.52 7.03 -64.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847705089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.887 kcal (2) G-P(sol) polarization free energy of solvation -71.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds