Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38571 * 119.84232 * 2 1 4 4 C 1.38046 * 120.40291 * 179.69538 * 3 2 1 5 5 C 1.38719 * 120.08884 * 0.60773 * 4 3 2 6 6 O 1.35637 * 120.15218 * 179.69418 * 5 4 3 7 7 C 1.40192 * 119.68814 * 359.41834 * 5 4 3 8 8 C 1.47397 * 120.19600 * 180.25398 * 7 5 4 9 9 O 1.21513 * 119.99907 * 356.06639 * 8 7 5 10 10 O 1.34753 * 120.00007 * 176.07035 * 8 7 5 11 11 C 1.45200 * 117.00154 * 184.63310 * 10 8 7 12 12 C 1.53001 * 109.47315 * 184.04896 * 11 10 8 13 13 C 1.50698 * 115.54850 * 306.59194 * 12 11 10 14 14 H 1.08003 * 120.00032 * 144.81344 * 13 12 11 15 15 C 1.37879 * 120.00404 * 324.81854 * 13 12 11 16 16 N 1.31515 * 119.99615 * 348.45900 * 15 13 12 17 17 Si 1.86794 * 120.00428 * 168.46845 * 15 13 12 18 18 H 1.48503 * 109.47267 * 89.99152 * 17 15 13 19 19 H 1.48492 * 109.47501 * 209.99832 * 17 15 13 20 20 H 1.48503 * 109.47056 * 329.99681 * 17 15 13 21 21 C 1.52994 * 117.49646 * 160.92618 * 12 11 10 22 22 C 1.52990 * 117.49660 * 92.26419 * 12 11 10 23 23 C 1.37759 * 119.84918 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47254 * 269.97258 * 1 2 3 25 25 H 1.08998 * 109.47445 * 29.97931 * 1 2 3 26 26 H 1.09009 * 109.46989 * 149.97535 * 1 2 3 27 27 H 1.07998 * 119.79410 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.95995 * 180.32725 * 4 3 2 29 29 H 0.96696 * 113.99949 * 269.72050 * 6 5 4 30 30 H 1.09004 * 109.47003 * 304.05442 * 11 10 8 31 31 H 1.09004 * 109.47205 * 64.04753 * 11 10 8 32 32 H 0.97002 * 119.99954 * 185.03709 * 16 15 13 33 33 H 1.08999 * 117.50419 * 359.97438 * 21 12 11 34 34 H 1.09002 * 117.49918 * 145.02214 * 21 12 11 35 35 H 1.09004 * 117.49995 * 214.98059 * 22 12 11 36 36 H 1.08999 * 117.50392 * 359.97438 * 22 12 11 37 37 H 1.07997 * 120.04811 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2020 0.0000 4 6 3.5769 1.2155 0.0063 5 6 4.2841 0.0221 0.0000 6 8 5.6404 0.0339 0.0000 7 6 3.5904 -1.1961 -0.0004 8 6 4.3306 -2.4708 -0.0015 9 8 5.5435 -2.4689 -0.0741 10 8 3.6622 -3.6381 0.0781 11 6 4.4584 -4.8483 0.1762 12 6 3.5361 -6.0689 0.1549 13 6 2.4242 -6.0611 1.1720 14 1 1.4629 -6.4869 0.9246 15 6 2.6338 -5.5104 2.4185 16 7 3.8523 -5.1995 2.8035 17 14 1.1873 -5.2060 3.5606 18 1 0.9605 -6.4075 4.4032 19 1 1.4807 -4.0391 4.4309 20 1 -0.0294 -4.9293 2.7554 21 6 4.1605 -7.4201 -0.1988 22 6 3.2472 -6.7123 -1.2027 23 6 2.1926 -1.1948 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6506 2.1338 0.0004 28 1 4.1070 2.1564 0.0116 29 1 6.0337 0.0377 -0.8834 30 1 5.1478 -4.8990 -0.6666 31 1 5.0240 -4.8366 1.1080 32 1 4.0093 -4.8806 3.7061 33 1 5.2283 -7.4395 -0.4167 34 1 3.7668 -8.3035 0.3039 35 1 2.2529 -7.1303 -1.3602 36 1 3.7138 -6.2658 -2.0808 37 1 1.6510 -2.1291 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849617001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = -79.233022 kcal Electronic energy + Delta-G solvation = -21449.947390 eV Core-core repulsion = 18158.486064 eV Total energy + Delta-G solvation = -3291.461327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18654 -38.71996 -36.92924 -36.57962 -34.87026 -32.15652 -31.83141 -31.30954 -26.67534 -26.29788 -25.38521 -23.78072 -21.92090 -21.23021 -19.98315 -19.17042 -18.18878 -17.00743 -16.62467 -15.77953 -15.59412 -15.24071 -15.03400 -14.57024 -14.22359 -13.84831 -13.62072 -13.53297 -13.05081 -12.58025 -12.22666 -12.09145 -11.77180 -11.63439 -11.46428 -11.39068 -10.96973 -10.82565 -10.60352 -10.50163 -10.33294 -9.84415 -9.46035 -9.37356 -9.10650 -8.97555 -8.75974 -8.42383 -8.11406 -6.04619 -4.08438 0.87315 1.29782 3.04812 3.26604 3.35152 3.37929 3.49690 3.89074 4.29377 4.36503 4.79769 4.84895 4.94640 5.10732 5.26353 5.45782 5.54349 5.61803 5.64369 5.71515 5.99649 6.03065 6.04713 6.18656 6.21721 6.36680 6.47567 6.53404 6.63663 6.66147 6.79961 6.83321 6.98158 7.25408 7.41262 7.54014 7.78630 7.89748 8.34149 8.66261 8.86976 9.51360 10.97389 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.006675 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.012670 B = 4193.457166 C = 5013.738903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.113 4.113 3 C -0.079 4.079 4 C -0.160 4.160 5 C 0.160 3.840 6 O -0.478 6.478 7 C -0.138 4.138 8 C 0.498 3.502 9 O -0.511 6.511 10 O -0.321 6.321 11 C 0.118 3.882 12 C 0.048 3.952 13 C -0.484 4.484 14 H 0.062 0.938 15 C 0.076 3.924 16 N -0.881 5.881 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.193 4.193 22 C -0.210 4.210 23 C -0.045 4.045 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.393 0.607 30 H 0.027 0.973 31 H 0.111 0.889 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 11.872 -6.655 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.114 4.114 3 C -0.097 4.097 4 C -0.179 4.179 5 C 0.114 3.886 6 O -0.289 6.289 7 C -0.140 4.140 8 C 0.342 3.658 9 O -0.403 6.403 10 O -0.235 6.235 11 C 0.045 3.955 12 C 0.048 3.952 13 C -0.521 4.521 14 H 0.080 0.920 15 C -0.127 4.127 16 N -0.518 5.518 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.231 4.231 22 C -0.247 4.247 23 C -0.063 4.063 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.250 0.750 30 H 0.046 0.954 31 H 0.129 0.871 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.192 11.952 -5.936 13.721 hybrid contribution -0.375 0.001 0.200 0.425 sum -3.566 11.953 -5.735 13.729 Atomic orbital electron populations 1.20778 0.90553 1.02919 1.02632 1.19915 0.96680 0.92687 1.02071 1.21074 0.93483 0.97751 0.97429 1.21300 0.94447 0.97397 1.04729 1.18495 0.83561 0.90580 0.95984 1.84751 1.14775 1.96073 1.33295 1.19825 0.94084 0.91300 1.08748 1.20796 0.85978 0.85123 0.73895 1.90767 1.14781 1.88439 1.46291 1.86537 1.41067 1.14486 1.81436 1.22800 0.91863 0.79301 1.01549 1.18885 0.96385 0.87677 0.92272 1.20389 0.96496 1.38466 0.96797 0.91971 1.24927 0.95632 0.94222 0.97939 1.69791 1.19557 1.44262 1.18162 0.86574 0.82928 0.77986 0.80520 1.20691 1.21015 1.19551 1.22966 0.96228 0.99236 1.04633 1.22965 0.99761 1.07865 0.94120 1.21483 0.92398 0.99090 0.93353 0.91010 0.91610 0.91026 0.85372 0.84844 0.74966 0.95439 0.87081 0.92659 0.91480 0.89770 0.90313 0.91339 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.00 36.00 0.36 -0.78 16 2 C -0.11 -1.48 5.87 -104.68 -0.61 -2.10 16 3 C -0.08 -0.91 9.68 -39.53 -0.38 -1.29 16 4 C -0.16 -2.02 9.98 -39.47 -0.39 -2.41 16 5 C 0.16 2.56 6.72 -38.67 -0.26 2.30 16 6 O -0.48 -7.66 11.58 -40.46 -0.47 -8.13 16 7 C -0.14 -2.55 5.89 -104.86 -0.62 -3.17 16 8 C 0.50 11.17 7.88 34.46 0.27 11.44 16 9 O -0.51 -12.20 14.89 -26.59 -0.40 -12.60 16 10 O -0.32 -7.81 9.11 -40.64 -0.37 -8.18 16 11 C 0.12 2.96 4.61 37.16 0.17 3.14 16 12 C 0.05 1.21 2.12 -155.67 -0.33 0.88 16 13 C -0.48 -13.10 8.76 -34.44 -0.30 -13.40 16 14 H 0.06 1.66 7.84 -52.48 -0.41 1.25 16 15 C 0.08 2.06 5.16 -17.82 -0.09 1.97 16 16 N -0.88 -24.83 10.81 55.43 0.60 -24.23 16 17 Si 0.89 20.99 29.56 -169.99 -5.02 15.97 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.19 -4.34 9.96 -26.70 -0.27 -4.60 16 22 C -0.21 -4.56 9.92 -26.70 -0.26 -4.83 16 23 C -0.05 -0.74 9.25 -39.18 -0.36 -1.10 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 26 H 0.07 0.72 8.08 -51.92 -0.42 0.30 16 27 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.39 4.54 9.06 45.56 0.41 4.96 16 30 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 31 H 0.11 3.10 6.07 -51.93 -0.32 2.79 16 32 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.88 8.14 -51.93 -0.42 1.45 16 35 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.15 2.52 7.62 -52.49 -0.40 2.12 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -31.54 322.90 -7.94 -39.48 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.06 Total: 6.79 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.08 Total: -13.96 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.60 Total: -24.23 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.23 Total: -28.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.54 -7.94 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849617001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.757 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds