Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38571 * 119.84232 * 2 1 4 4 C 1.38046 * 120.40291 * 179.69538 * 3 2 1 5 5 C 1.38719 * 120.08884 * 0.60773 * 4 3 2 6 6 O 1.35637 * 120.15218 * 179.69418 * 5 4 3 7 7 C 1.40192 * 119.68814 * 359.41834 * 5 4 3 8 8 C 1.47397 * 120.19600 * 180.25398 * 7 5 4 9 9 O 1.21513 * 119.99907 * 356.06639 * 8 7 5 10 10 O 1.34753 * 120.00007 * 176.07035 * 8 7 5 11 11 C 1.45200 * 117.00154 * 184.63310 * 10 8 7 12 12 C 1.53001 * 109.47315 * 184.04896 * 11 10 8 13 13 C 1.50698 * 115.54850 * 306.59194 * 12 11 10 14 14 H 1.08003 * 120.00032 * 144.81344 * 13 12 11 15 15 C 1.37879 * 120.00404 * 324.81854 * 13 12 11 16 16 N 1.31515 * 119.99615 * 348.45900 * 15 13 12 17 17 Si 1.86794 * 120.00428 * 168.46845 * 15 13 12 18 18 H 1.48503 * 109.47267 * 89.99152 * 17 15 13 19 19 H 1.48492 * 109.47501 * 209.99832 * 17 15 13 20 20 H 1.48503 * 109.47056 * 329.99681 * 17 15 13 21 21 C 1.52994 * 117.49646 * 160.92618 * 12 11 10 22 22 C 1.52990 * 117.49660 * 92.26419 * 12 11 10 23 23 C 1.37759 * 119.84918 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47254 * 269.97258 * 1 2 3 25 25 H 1.08998 * 109.47445 * 29.97931 * 1 2 3 26 26 H 1.09009 * 109.46989 * 149.97535 * 1 2 3 27 27 H 1.07998 * 119.79410 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.95995 * 180.32725 * 4 3 2 29 29 H 0.96696 * 113.99949 * 269.72050 * 6 5 4 30 30 H 1.09004 * 109.47003 * 304.05442 * 11 10 8 31 31 H 1.09004 * 109.47205 * 64.04753 * 11 10 8 32 32 H 0.97002 * 119.99954 * 185.03709 * 16 15 13 33 33 H 1.08999 * 117.50419 * 359.97438 * 21 12 11 34 34 H 1.09002 * 117.49918 * 145.02214 * 21 12 11 35 35 H 1.09004 * 117.49995 * 214.98059 * 22 12 11 36 36 H 1.08999 * 117.50392 * 359.97438 * 22 12 11 37 37 H 1.07997 * 120.04811 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2020 0.0000 4 6 3.5769 1.2155 0.0063 5 6 4.2841 0.0221 0.0000 6 8 5.6404 0.0339 0.0000 7 6 3.5904 -1.1961 -0.0004 8 6 4.3306 -2.4708 -0.0015 9 8 5.5435 -2.4689 -0.0741 10 8 3.6622 -3.6381 0.0781 11 6 4.4584 -4.8483 0.1762 12 6 3.5361 -6.0689 0.1549 13 6 2.4242 -6.0611 1.1720 14 1 1.4629 -6.4869 0.9246 15 6 2.6338 -5.5104 2.4185 16 7 3.8523 -5.1995 2.8035 17 14 1.1873 -5.2060 3.5606 18 1 0.9605 -6.4075 4.4032 19 1 1.4807 -4.0391 4.4309 20 1 -0.0294 -4.9293 2.7554 21 6 4.1605 -7.4201 -0.1988 22 6 3.2472 -6.7123 -1.2027 23 6 2.1926 -1.1948 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6506 2.1338 0.0004 28 1 4.1070 2.1564 0.0116 29 1 6.0337 0.0377 -0.8834 30 1 5.1478 -4.8990 -0.6666 31 1 5.0240 -4.8366 1.1080 32 1 4.0093 -4.8806 3.7061 33 1 5.2283 -7.4395 -0.4167 34 1 3.7668 -8.3035 0.3039 35 1 2.2529 -7.1303 -1.3602 36 1 3.7138 -6.2658 -2.0808 37 1 1.6510 -2.1291 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849617001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = -97.390669 kcal Electronic energy + Delta-G solvation = -21450.734765 eV Core-core repulsion = 18158.486064 eV Total energy + Delta-G solvation = -3292.248702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61839 -40.22830 -38.50425 -38.00569 -36.68744 -34.20563 -32.92158 -32.43746 -28.52843 -27.43480 -27.27351 -25.15187 -23.16645 -22.95336 -21.43372 -21.13262 -19.41470 -18.62694 -18.45393 -17.26933 -17.26127 -16.61946 -16.58973 -16.35487 -15.65332 -15.27287 -14.85140 -14.81827 -14.45261 -13.93161 -13.82455 -13.52388 -13.51725 -12.90040 -12.82391 -12.80296 -12.61136 -12.44426 -12.34158 -12.15579 -11.91846 -11.58653 -11.39869 -11.10793 -11.09598 -10.68106 -10.13978 -10.07576 -9.51261 -8.09560 -6.19507 -0.36501 0.20810 1.38458 1.41875 1.51707 1.55803 1.91157 2.40040 2.62017 3.00689 3.17335 3.52600 3.70123 3.88094 3.92382 4.17124 4.26330 4.28286 4.36369 4.52007 4.59997 4.73575 4.77608 4.88080 4.88645 4.90756 4.97317 5.13312 5.15114 5.25536 5.27472 5.36572 5.48794 5.50881 5.72611 5.79184 5.80306 6.31030 6.73610 6.75754 6.92418 7.42529 8.90746 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.006675 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.012670 B = 4193.457166 C = 5013.738903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C -0.057 4.057 4 C -0.149 4.149 5 C 0.148 3.852 6 O -0.496 6.496 7 C -0.177 4.177 8 C 0.489 3.511 9 O -0.539 6.539 10 O -0.334 6.334 11 C 0.128 3.872 12 C 0.007 3.993 13 C -0.497 4.497 14 H 0.059 0.941 15 C 0.030 3.970 16 N -0.909 5.909 17 Si 0.949 3.051 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.260 1.260 21 C -0.185 4.185 22 C -0.185 4.185 23 C -0.062 4.062 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.177 0.823 28 H 0.168 0.832 29 H 0.408 0.592 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.542 14.232 -7.276 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.110 4.110 3 C -0.075 4.075 4 C -0.167 4.167 5 C 0.102 3.898 6 O -0.310 6.310 7 C -0.178 4.178 8 C 0.336 3.664 9 O -0.432 6.432 10 O -0.249 6.249 11 C 0.054 3.946 12 C 0.007 3.993 13 C -0.535 4.535 14 H 0.078 0.922 15 C -0.170 4.170 16 N -0.547 5.547 17 Si 0.774 3.226 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.184 1.184 21 C -0.223 4.223 22 C -0.222 4.222 23 C -0.081 4.081 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.195 0.805 28 H 0.186 0.814 29 H 0.267 0.733 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.168 14.301 -6.582 16.569 hybrid contribution 0.235 -0.656 0.333 0.772 sum -4.933 13.644 -6.249 15.797 Atomic orbital electron populations 1.20866 0.88250 1.04358 1.03371 1.20275 0.98313 0.91923 1.00519 1.21630 0.93131 0.98849 0.93889 1.21670 0.95071 0.97096 1.02857 1.18794 0.83602 0.90919 0.96436 1.84695 1.15270 1.96101 1.34891 1.19848 0.95017 0.90059 1.12902 1.21648 0.86191 0.85791 0.72763 1.90719 1.15871 1.88758 1.47878 1.86543 1.41424 1.15013 1.81901 1.22497 0.91945 0.80257 0.99853 1.19030 0.97185 0.88715 0.94405 1.20643 0.96905 1.38445 0.97468 0.92232 1.25629 0.97751 0.94133 0.99447 1.69960 1.21288 1.45343 1.18130 0.85680 0.80400 0.77747 0.78746 1.19920 1.21409 1.18418 1.22970 0.97200 0.97727 1.04430 1.22981 1.00183 1.05866 0.93190 1.21432 0.91641 1.00017 0.94984 0.90469 0.88340 0.91536 0.80536 0.81415 0.73260 0.95022 0.90476 0.93186 0.90233 0.89759 0.89339 0.89594 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 10.00 71.24 0.71 -1.20 16 2 C -0.11 -2.59 5.87 -19.90 -0.12 -2.71 16 3 C -0.06 -1.06 9.68 22.30 0.22 -0.84 16 4 C -0.15 -3.23 9.98 22.34 0.22 -3.01 16 5 C 0.15 4.66 6.72 22.86 0.15 4.81 16 6 O -0.50 -15.95 11.58 -68.62 -0.79 -16.75 16 7 C -0.18 -6.72 5.89 -20.02 -0.12 -6.83 16 8 C 0.49 23.15 7.88 70.23 0.55 23.71 16 9 O -0.54 -27.16 14.89 26.79 0.40 -26.77 16 10 O -0.33 -17.10 9.11 -56.64 -0.52 -17.62 16 11 C 0.13 6.73 4.61 71.98 0.33 7.06 16 12 C 0.01 0.36 2.12 -52.93 -0.11 0.25 16 13 C -0.50 -27.40 8.76 25.60 0.22 -27.17 16 14 H 0.06 3.21 7.84 -2.91 -0.02 3.19 16 15 C 0.03 1.69 5.16 84.65 0.44 2.13 16 16 N -0.91 -53.24 10.81 21.45 0.23 -53.01 16 17 Si 0.95 43.66 29.56 68.60 2.03 45.69 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 C -0.19 -8.31 9.96 30.62 0.30 -8.01 16 22 C -0.19 -7.90 9.92 30.62 0.30 -7.60 16 23 C -0.06 -2.06 9.25 22.53 0.21 -1.85 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 26 H 0.07 1.21 8.08 -2.38 -0.02 1.19 16 27 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 28 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 29 H 0.41 9.55 9.06 -74.06 -0.67 8.88 16 30 H 0.03 1.58 7.94 -2.38 -0.02 1.56 16 31 H 0.08 4.57 6.07 -2.38 -0.01 4.56 16 32 H 0.26 14.69 8.32 -92.71 -0.77 13.92 16 33 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16 35 H 0.09 3.59 8.14 -2.38 -0.02 3.57 16 36 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.13 4.58 7.62 -2.91 -0.02 4.56 16 Total: -1.00 -71.41 322.90 5.09 -66.32 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.42 Total: 23.40 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 3.32 Total: -21.27 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.23 Total: -53.01 kcal Atomic # 8 Polarization: -60.22 SS G_CDS: -0.91 Total: -61.13 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -71.41 5.09 -66.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849617001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.071 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds