Wall clock time and date at job start Mon Mar 30 2020 01:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47099 * 240.00057 * 3 2 1 5 5 H 1.48497 * 109.47262 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47030 * 120.00215 * 3 2 1 7 7 C 1.37879 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00301 * 184.29500 * 7 2 1 9 9 C 1.50697 * 120.00244 * 4.29837 * 7 2 1 10 10 C 1.53000 * 115.54895 * 85.58166 * 9 7 2 11 11 O 1.45205 * 109.46912 * 64.98856 * 10 9 7 12 12 C 1.34227 * 116.99877 * 175.29654 * 11 10 9 13 13 O 1.20833 * 120.00177 * 3.93730 * 12 11 10 14 14 C 1.50694 * 120.00216 * 183.93002 * 12 11 10 15 15 H 1.09000 * 109.47424 * 305.66129 * 14 12 11 16 16 O 1.42895 * 109.47829 * 185.65442 * 14 12 11 17 17 C 1.50706 * 109.46736 * 65.65346 * 14 12 11 18 18 C 1.38239 * 119.99715 * 81.15673 * 17 14 12 19 19 C 1.38236 * 119.99930 * 179.78563 * 18 17 14 20 20 C 1.38238 * 119.99949 * 0.44552 * 19 18 17 21 21 C 1.38234 * 119.99588 * 359.80640 * 20 19 18 22 22 C 1.38228 * 120.00421 * 359.97438 * 21 20 19 23 23 C 1.52995 * 117.50036 * 231.25917 * 9 7 2 24 24 C 1.52999 * 117.49841 * 299.91749 * 9 7 2 25 25 H 0.97002 * 120.00072 * 5.01077 * 1 2 3 26 26 H 1.08996 * 109.47344 * 304.98597 * 10 9 7 27 27 H 1.09004 * 109.46842 * 184.98374 * 10 9 7 28 28 H 0.96705 * 113.99870 * 300.00337 * 16 14 12 29 29 H 1.08005 * 120.00090 * 359.97438 * 18 17 14 30 30 H 1.07998 * 120.00071 * 180.27162 * 19 18 17 31 31 H 1.07992 * 119.99667 * 179.83534 * 20 19 18 32 32 H 1.08009 * 119.99579 * 180.02562 * 21 20 19 33 33 H 1.08000 * 119.99937 * 179.97438 * 22 21 20 34 34 H 1.09005 * 117.49402 * 215.00131 * 23 9 7 35 35 H 1.09003 * 117.49922 * 0.02562 * 23 9 7 36 36 H 1.09006 * 117.49735 * 359.97438 * 24 9 7 37 37 H 1.08998 * 117.50077 * 144.97029 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0822 -1.1954 0.0706 9 6 1.2542 -2.4974 -0.0967 10 6 0.9230 -2.9639 -1.5157 11 8 2.1537 -3.2567 -2.2285 12 6 2.0355 -3.7729 -3.4619 13 8 0.9422 -3.9072 -3.9584 14 6 3.2664 -4.1848 -4.2275 15 1 3.9605 -3.3458 -4.2782 16 8 2.8956 -4.5768 -5.5506 17 6 3.9291 -5.3432 -3.5275 18 6 3.4529 -6.6275 -3.7140 19 6 4.0635 -7.6906 -3.0754 20 6 5.1445 -7.4684 -2.2430 21 6 5.6174 -6.1836 -2.0524 22 6 5.0097 -5.1210 -2.6946 23 6 1.5682 -3.5728 0.9453 24 6 0.2407 -2.8130 1.0052 25 1 -0.4850 0.8368 -0.0734 26 1 0.3784 -2.1778 -2.0388 27 1 0.3079 -3.8625 -1.4685 28 1 2.2779 -5.3203 -5.5820 29 1 2.6056 -6.8006 -4.3611 30 1 3.6942 -8.6945 -3.2246 31 1 5.6199 -8.2987 -1.7420 32 1 6.4624 -6.0100 -1.4024 33 1 5.3790 -4.1171 -2.5453 34 1 1.5389 -4.6127 0.6198 35 1 2.3172 -3.3374 1.7014 36 1 0.1170 -2.0781 1.8007 37 1 -0.6621 -3.3526 0.7192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849633417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:38 Heat of formation + Delta-G solvation = -86.238324 kcal Electronic energy + Delta-G solvation = -21258.211894 eV Core-core repulsion = 17966.446794 eV Total energy + Delta-G solvation = -3291.765100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.43301 -39.05189 -37.20836 -36.29312 -35.21946 -31.97765 -31.81888 -30.94652 -27.95250 -26.30736 -25.16205 -22.69076 -22.17643 -21.18831 -20.51477 -19.30740 -17.97873 -17.50658 -16.78641 -16.11348 -15.95456 -15.30145 -15.19358 -14.62648 -14.48664 -13.88108 -13.82621 -13.43239 -13.26157 -12.89462 -12.52908 -12.18635 -11.97211 -11.71479 -11.63761 -11.15587 -10.99656 -10.92071 -10.85273 -10.56049 -10.28970 -10.02657 -9.92130 -9.51578 -8.99376 -8.98113 -8.83349 -8.44482 -8.21654 -6.08214 -4.14967 1.16312 1.33233 2.54633 3.11874 3.29242 3.34413 3.36709 3.67345 4.28385 4.37671 4.47515 4.73133 4.89075 5.00782 5.07552 5.20247 5.21416 5.39778 5.42712 5.56303 5.80927 5.91612 5.94436 6.18736 6.27429 6.32962 6.41445 6.43592 6.47333 6.60751 6.71521 6.87532 7.02922 7.12236 7.29741 7.31926 7.49090 7.83871 8.22885 8.37220 8.86716 9.51156 11.00456 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019105 B = 0.005190 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.218551 B = 5393.624995 C = 5637.525598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.489 4.489 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.116 3.884 11 O -0.328 6.328 12 C 0.430 3.570 13 O -0.515 6.515 14 C 0.161 3.839 15 H 0.144 0.856 16 O -0.527 6.527 17 C -0.116 4.116 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.205 4.205 24 C -0.139 4.139 25 H 0.262 0.738 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.382 0.618 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -12.806 -5.422 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.526 4.526 8 H 0.081 0.919 9 C 0.034 3.966 10 C 0.043 3.957 11 O -0.243 6.243 12 C 0.272 3.728 13 O -0.405 6.405 14 C 0.100 3.900 15 H 0.162 0.838 16 O -0.333 6.333 17 C -0.116 4.116 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.105 4.105 23 C -0.242 4.242 24 C -0.176 4.176 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.231 0.769 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.317 -12.192 -5.618 15.791 hybrid contribution -0.290 0.507 0.147 0.602 sum 8.027 -11.685 -5.470 15.195 Atomic orbital electron populations 1.69987 1.05874 1.27127 1.48899 1.25010 0.94875 0.99065 0.94452 0.86669 0.79678 0.82998 0.78775 1.20110 1.21252 1.20099 1.20347 0.92732 0.88348 1.51210 0.91938 1.18771 0.99690 0.93852 0.84319 1.22944 0.81565 0.97877 0.93311 1.86542 1.39585 1.71752 1.26409 1.24327 0.91388 0.74942 0.82177 1.90633 1.28613 1.51974 1.69277 1.20280 0.91576 0.96428 0.81724 0.83843 1.86654 1.67320 1.55868 1.23502 1.20084 0.97597 0.94163 0.99774 1.20883 0.99643 0.92259 0.99889 1.21056 0.96513 0.98704 0.97548 1.21206 0.96718 0.97159 0.98225 1.21167 1.00239 0.92597 0.99507 1.21057 0.94579 0.99853 0.94966 1.22991 1.00347 0.95530 1.05320 1.22528 0.90809 1.01353 1.02924 0.92817 0.90950 0.94209 0.76871 0.86211 0.85902 0.85984 0.85591 0.84998 0.91737 0.90096 0.89031 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.78 12.63 55.43 0.70 -24.08 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.78 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.49 -13.20 8.77 -34.44 -0.30 -13.51 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.03 0.84 1.70 -155.66 -0.26 0.58 16 10 C 0.12 2.74 5.31 37.16 0.20 2.94 16 11 O -0.33 -7.07 10.15 -39.25 -0.40 -7.47 16 12 C 0.43 8.15 7.25 36.00 0.26 8.41 16 13 O -0.51 -10.88 16.05 -25.46 -0.41 -11.29 16 14 C 0.16 2.34 3.73 -29.03 -0.11 2.23 16 15 H 0.14 1.88 8.02 -51.93 -0.42 1.47 16 16 O -0.53 -7.31 12.84 -55.12 -0.71 -8.02 16 17 C -0.12 -1.54 4.96 -104.62 -0.52 -2.06 16 18 C -0.11 -1.30 9.33 -39.58 -0.37 -1.67 16 19 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 20 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 21 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 22 C -0.09 -1.08 9.67 -39.59 -0.38 -1.47 16 23 C -0.20 -4.46 9.96 -26.70 -0.27 -4.73 16 24 C -0.14 -3.24 9.12 -26.70 -0.24 -3.48 16 25 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 26 H 0.07 1.88 8.14 -51.93 -0.42 1.45 16 27 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 28 H 0.38 4.31 7.21 45.56 0.33 4.64 16 29 H 0.12 1.23 6.74 -52.48 -0.35 0.88 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 33 H 0.13 1.52 8.05 -52.49 -0.42 1.10 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.09 2.27 8.14 -51.93 -0.42 1.85 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -31.01 326.96 -8.40 -39.41 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.21 Total: 6.50 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -3.29 Total: -15.91 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.70 Total: -24.08 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.51 Total: -26.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.01 -8.40 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849633417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.828 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds