Wall clock time and date at job start Mon Mar 30 2020 01:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47099 * 240.00057 * 3 2 1 5 5 H 1.48497 * 109.47262 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47030 * 120.00215 * 3 2 1 7 7 C 1.37879 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00301 * 184.29500 * 7 2 1 9 9 C 1.50697 * 120.00244 * 4.29837 * 7 2 1 10 10 C 1.53000 * 115.54895 * 85.58166 * 9 7 2 11 11 O 1.45205 * 109.46912 * 64.98856 * 10 9 7 12 12 C 1.34227 * 116.99877 * 175.29654 * 11 10 9 13 13 O 1.20833 * 120.00177 * 3.93730 * 12 11 10 14 14 C 1.50694 * 120.00216 * 183.93002 * 12 11 10 15 15 H 1.09000 * 109.47424 * 305.66129 * 14 12 11 16 16 O 1.42895 * 109.47829 * 185.65442 * 14 12 11 17 17 C 1.50706 * 109.46736 * 65.65346 * 14 12 11 18 18 C 1.38239 * 119.99715 * 81.15673 * 17 14 12 19 19 C 1.38236 * 119.99930 * 179.78563 * 18 17 14 20 20 C 1.38238 * 119.99949 * 0.44552 * 19 18 17 21 21 C 1.38234 * 119.99588 * 359.80640 * 20 19 18 22 22 C 1.38228 * 120.00421 * 359.97438 * 21 20 19 23 23 C 1.52995 * 117.50036 * 231.25917 * 9 7 2 24 24 C 1.52999 * 117.49841 * 299.91749 * 9 7 2 25 25 H 0.97002 * 120.00072 * 5.01077 * 1 2 3 26 26 H 1.08996 * 109.47344 * 304.98597 * 10 9 7 27 27 H 1.09004 * 109.46842 * 184.98374 * 10 9 7 28 28 H 0.96705 * 113.99870 * 300.00337 * 16 14 12 29 29 H 1.08005 * 120.00090 * 359.97438 * 18 17 14 30 30 H 1.07998 * 120.00071 * 180.27162 * 19 18 17 31 31 H 1.07992 * 119.99667 * 179.83534 * 20 19 18 32 32 H 1.08009 * 119.99579 * 180.02562 * 21 20 19 33 33 H 1.08000 * 119.99937 * 179.97438 * 22 21 20 34 34 H 1.09005 * 117.49402 * 215.00131 * 23 9 7 35 35 H 1.09003 * 117.49922 * 0.02562 * 23 9 7 36 36 H 1.09006 * 117.49735 * 359.97438 * 24 9 7 37 37 H 1.08998 * 117.50077 * 144.97029 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0822 -1.1954 0.0706 9 6 1.2542 -2.4974 -0.0967 10 6 0.9230 -2.9639 -1.5157 11 8 2.1537 -3.2567 -2.2285 12 6 2.0355 -3.7729 -3.4619 13 8 0.9422 -3.9072 -3.9584 14 6 3.2664 -4.1848 -4.2275 15 1 3.9605 -3.3458 -4.2782 16 8 2.8956 -4.5768 -5.5506 17 6 3.9291 -5.3432 -3.5275 18 6 3.4529 -6.6275 -3.7140 19 6 4.0635 -7.6906 -3.0754 20 6 5.1445 -7.4684 -2.2430 21 6 5.6174 -6.1836 -2.0524 22 6 5.0097 -5.1210 -2.6946 23 6 1.5682 -3.5728 0.9453 24 6 0.2407 -2.8130 1.0052 25 1 -0.4850 0.8368 -0.0734 26 1 0.3784 -2.1778 -2.0388 27 1 0.3079 -3.8625 -1.4685 28 1 2.2779 -5.3203 -5.5820 29 1 2.6056 -6.8006 -4.3611 30 1 3.6942 -8.6945 -3.2246 31 1 5.6199 -8.2987 -1.7420 32 1 6.4624 -6.0100 -1.4024 33 1 5.3790 -4.1171 -2.5453 34 1 1.5389 -4.6127 0.6198 35 1 2.3172 -3.3374 1.7014 36 1 0.1170 -2.0781 1.8007 37 1 -0.6621 -3.3526 0.7192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849633417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:38 Heat of formation + Delta-G solvation = -103.465773 kcal Electronic energy + Delta-G solvation = -21258.958932 eV Core-core repulsion = 17966.446794 eV Total energy + Delta-G solvation = -3292.512138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83239 -40.15647 -38.77034 -37.70883 -36.84624 -34.02545 -32.79349 -31.78249 -29.40251 -27.93083 -27.05592 -23.54635 -23.32787 -22.93190 -21.82985 -21.23095 -19.20629 -18.86299 -18.38790 -17.69399 -17.30978 -16.69766 -16.46640 -16.31606 -15.73303 -15.37362 -15.00354 -14.79843 -14.26238 -14.14573 -14.06405 -13.67214 -13.58533 -13.21639 -12.94409 -12.79209 -12.72419 -12.43470 -12.13493 -12.08165 -11.92049 -11.75219 -11.53120 -11.18770 -10.94208 -10.44244 -10.10994 -9.83957 -9.74654 -8.14391 -6.26575 0.25969 0.48672 1.05842 1.42228 1.43370 1.50742 1.64847 2.41748 2.76430 3.13589 3.24007 3.33674 3.47698 3.73190 3.83647 4.07729 4.08878 4.23583 4.31008 4.33884 4.41174 4.59580 4.62213 4.70613 4.79314 4.94989 4.97351 5.12826 5.16889 5.39033 5.50105 5.54421 5.54872 5.60335 5.63753 5.73469 6.06145 6.27513 6.33983 6.68078 6.78839 7.42284 8.93710 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019105 B = 0.005190 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.218551 B = 5393.624995 C = 5637.525598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.003 3.997 10 C 0.129 3.871 11 O -0.336 6.336 12 C 0.427 3.573 13 O -0.541 6.541 14 C 0.174 3.826 15 H 0.156 0.844 16 O -0.530 6.530 17 C -0.135 4.135 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.103 4.103 23 C -0.175 4.175 24 C -0.141 4.141 25 H 0.261 0.739 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.392 0.608 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.029 -14.271 -5.287 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.003 3.997 10 C 0.055 3.945 11 O -0.251 6.251 12 C 0.271 3.729 13 O -0.432 6.432 14 C 0.113 3.887 15 H 0.173 0.827 16 O -0.338 6.338 17 C -0.135 4.135 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.121 4.121 23 C -0.213 4.213 24 C -0.179 4.179 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.244 0.756 29 H 0.148 0.852 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.914 -13.674 -5.489 17.760 hybrid contribution -0.759 0.864 0.076 1.152 sum 9.155 -12.810 -5.413 16.650 Atomic orbital electron populations 1.70095 1.07097 1.27678 1.49933 1.25715 0.95617 1.02109 0.94254 0.85741 0.78536 0.79209 0.79001 1.19787 1.21125 1.19193 1.20616 0.92715 0.89759 1.50959 0.92470 1.18867 1.01024 0.94488 0.85349 1.22538 0.82241 0.96977 0.92736 1.86547 1.38442 1.72361 1.27761 1.25359 0.92695 0.73609 0.81244 1.90610 1.30150 1.52946 1.69533 1.20311 0.89414 0.97679 0.81316 0.82669 1.86636 1.67607 1.56491 1.23062 1.20022 0.98490 0.94040 1.00955 1.21140 1.00194 0.92224 1.00384 1.21417 0.96344 0.99495 0.96911 1.21612 0.96261 0.97722 0.97547 1.21477 1.00698 0.92588 0.99437 1.21242 0.94872 1.00680 0.95355 1.22975 0.98970 0.95863 1.03444 1.22444 0.91996 1.01518 1.01941 0.93004 0.94407 0.93373 0.75647 0.85222 0.83407 0.83174 0.83606 0.84851 0.89445 0.89633 0.91037 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.01 12.63 21.45 0.27 -51.74 16 2 C 0.02 1.27 5.43 84.66 0.46 1.73 16 3 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.50 -27.34 8.77 25.60 0.22 -27.11 16 8 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 9 C 0.00 0.16 1.70 -52.93 -0.09 0.07 16 10 C 0.13 6.16 5.31 71.98 0.38 6.54 16 11 O -0.34 -14.54 10.15 -51.39 -0.52 -15.06 16 12 C 0.43 16.20 7.25 71.23 0.52 16.72 16 13 O -0.54 -23.08 16.05 28.36 0.46 -22.62 16 14 C 0.17 4.95 3.73 29.10 0.11 5.05 16 15 H 0.16 3.98 8.02 -2.39 -0.02 3.96 16 16 O -0.53 -14.24 12.84 -129.96 -1.67 -15.91 16 17 C -0.13 -3.41 4.96 -19.86 -0.10 -3.51 16 18 C -0.12 -2.68 9.33 22.27 0.21 -2.48 16 19 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 20 C -0.11 -1.97 10.05 22.27 0.22 -1.75 16 21 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 22 C -0.10 -2.45 9.67 22.27 0.22 -2.23 16 23 C -0.18 -7.40 9.96 30.62 0.30 -7.09 16 24 C -0.14 -6.58 9.12 30.62 0.28 -6.30 16 25 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 26 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 2.17 8.04 -2.38 -0.02 2.15 16 28 H 0.39 8.52 7.21 -74.05 -0.53 7.99 16 29 H 0.13 2.46 6.74 -2.91 -0.02 2.44 16 30 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.13 2.97 8.05 -2.91 -0.02 2.95 16 34 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 35 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.07 3.59 8.14 -2.38 -0.02 3.57 16 37 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -66.21 326.96 4.29 -61.92 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.54 Total: 22.87 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 3.18 Total: -24.62 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.27 Total: -51.74 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.73 Total: -53.59 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -66.21 4.29 -61.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849633417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.544 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds