Wall clock time and date at job start Mon Mar 30 2020 01:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48492 * 109.47153 * 275.31161 * 3 2 1 5 5 H 1.48503 * 109.46812 * 35.31016 * 3 2 1 6 6 H 1.48498 * 109.46950 * 155.30301 * 3 2 1 7 7 C 1.37880 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99928 * 348.75090 * 7 2 1 9 9 C 1.50694 * 119.99919 * 168.74586 * 7 2 1 10 10 C 1.52997 * 115.55399 * 323.31133 * 9 7 2 11 11 O 1.45200 * 109.47398 * 184.78557 * 10 9 7 12 12 C 1.34714 * 117.00022 * 181.55884 * 11 10 9 13 13 O 1.21470 * 120.00025 * 5.80481 * 12 11 10 14 14 C 1.47725 * 119.99708 * 185.79845 * 12 11 10 15 15 C 1.39627 * 120.14506 * 173.69407 * 14 12 11 16 16 C 1.37948 * 119.84801 * 179.97438 * 15 14 12 17 17 C 1.38365 * 120.14676 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.84703 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47227 * 90.00057 * 18 17 16 20 20 C 1.38366 * 120.30440 * 0.26968 * 17 16 15 21 21 C 1.37942 * 120.15015 * 359.45687 * 20 17 16 22 22 C 1.53003 * 117.49754 * 108.98179 * 9 7 2 23 23 C 1.53001 * 117.49658 * 177.63753 * 9 7 2 24 24 H 0.96997 * 120.00097 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46813 * 64.78589 * 10 9 7 26 26 H 1.09000 * 109.47197 * 304.79522 * 10 9 7 27 27 H 1.08007 * 120.08041 * 359.95416 * 15 14 12 28 28 H 1.08004 * 119.92683 * 179.97438 * 16 15 14 29 29 H 1.08999 * 109.47244 * 330.00172 * 18 17 16 30 30 H 1.09004 * 109.47192 * 209.99851 * 18 17 16 31 31 H 0.96705 * 114.00300 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.92661 * 179.72708 * 20 17 16 33 33 H 1.08001 * 120.07838 * 180.27402 * 21 20 17 34 34 H 1.09000 * 117.50010 * 215.00471 * 22 9 7 35 35 H 1.09004 * 117.49892 * 0.02562 * 22 9 7 36 36 H 1.09000 * 117.50278 * 359.97438 * 23 9 7 37 37 H 1.09000 * 117.49724 * 144.97442 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3844 2.1112 -1.3940 5 1 1.5072 2.6177 0.8093 6 1 3.5983 1.4104 0.5850 7 6 2.0046 -1.1941 0.0005 8 1 1.4802 -2.1203 0.1834 9 6 3.4898 -1.2067 -0.2542 10 6 3.9916 -0.1915 -1.2830 11 8 5.4118 -0.3927 -1.5086 12 6 6.0193 0.4468 -2.3694 13 8 5.4068 1.3866 -2.8356 14 6 7.4302 0.2245 -2.7464 15 6 8.0240 1.0110 -3.7356 16 6 9.3421 0.7985 -4.0824 17 6 10.0754 -0.1917 -3.4528 18 6 11.5147 -0.4184 -3.8374 19 8 12.3597 0.3951 -3.0211 20 6 9.4914 -0.9786 -2.4760 21 6 8.1759 -0.7732 -2.1155 22 6 4.4067 -1.5261 0.9284 23 6 4.2068 -2.5565 -0.1858 24 1 -0.4850 0.8400 -0.0004 25 1 3.8225 0.8184 -0.9093 26 1 3.4520 -0.3271 -2.2203 27 1 7.4525 1.7837 -4.2284 28 1 9.8026 1.4058 -4.8477 29 1 11.6570 -0.1531 -4.8850 30 1 11.7691 -1.4681 -3.6905 31 1 13.3025 0.3006 -3.2142 32 1 10.0682 -1.7527 -1.9916 33 1 7.7226 -1.3852 -1.3498 34 1 5.3673 -1.0130 0.9734 35 1 3.9355 -1.7275 1.8905 36 1 3.6044 -3.4354 0.0439 37 1 5.0358 -2.7215 -0.8741 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849639265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:03 Heat of formation + Delta-G solvation = -71.939388 kcal Electronic energy + Delta-G solvation = -20725.590636 eV Core-core repulsion = 17434.445585 eV Total energy + Delta-G solvation = -3291.145051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41037 -39.18371 -37.27081 -36.77670 -35.32315 -32.29273 -32.20614 -31.23360 -28.05690 -26.82150 -25.16973 -22.88094 -22.71612 -21.40261 -20.57708 -19.18689 -18.00018 -17.86295 -17.10902 -16.38061 -16.01684 -15.75114 -15.63085 -14.69409 -14.67360 -14.08335 -13.90827 -13.60525 -13.51627 -13.30679 -12.83677 -12.65381 -12.44890 -11.81049 -11.55973 -11.32586 -11.14466 -10.81218 -10.51995 -10.50130 -10.44893 -10.32254 -9.74021 -9.52934 -9.27947 -9.19704 -9.15134 -8.71696 -8.36268 -6.26849 -4.21770 0.52256 1.17205 2.58177 2.96763 3.24494 3.33344 3.35769 3.55958 4.06144 4.27226 4.47684 4.59232 4.70837 4.74008 4.81999 4.96510 4.98986 5.18969 5.32034 5.38601 5.58198 5.69798 5.77696 5.81133 5.95631 6.04558 6.16097 6.21850 6.25020 6.50736 6.57854 6.61857 6.70629 6.90578 6.98823 7.17910 7.21003 7.60003 8.03793 8.38566 8.77897 9.35533 10.85034 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.004140 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.479372 B = 6762.175845 C = 7288.372991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.086 0.914 9 C 0.004 3.996 10 C 0.087 3.913 11 O -0.346 6.346 12 C 0.498 3.502 13 O -0.508 6.508 14 C -0.110 4.110 15 C -0.061 4.061 16 C -0.113 4.113 17 C -0.068 4.068 18 C 0.115 3.885 19 O -0.566 6.566 20 C -0.113 4.113 21 C -0.063 4.063 22 C -0.199 4.199 23 C -0.178 4.178 24 H 0.269 0.731 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.131 0.869 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.381 0.619 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.246 -1.304 -7.996 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.520 4.520 8 H 0.104 0.896 9 C 0.003 3.997 10 C 0.015 3.985 11 O -0.262 6.262 12 C 0.342 3.658 13 O -0.398 6.398 14 C -0.111 4.111 15 C -0.079 4.079 16 C -0.131 4.131 17 C -0.069 4.069 18 C 0.037 3.963 19 O -0.372 6.372 20 C -0.131 4.131 21 C -0.081 4.081 22 C -0.237 4.237 23 C -0.215 4.215 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.157 0.843 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.228 0.772 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.235 -0.743 -7.848 23.591 hybrid contribution 0.743 0.853 -0.256 1.160 sum 22.978 0.110 -8.104 24.366 Atomic orbital electron populations 1.69890 1.06241 1.27511 1.48255 1.24998 0.94699 0.98974 0.93906 0.87166 0.79831 0.83899 0.78934 1.19858 1.21677 1.18477 1.20296 0.87359 0.95355 1.48993 0.89570 1.19372 0.94018 0.92694 0.93595 1.23596 0.74031 1.00451 1.00426 1.86493 1.27768 1.54376 1.57574 1.21179 0.87540 0.80384 0.76678 1.90826 1.66559 1.30124 1.52281 1.19326 0.91353 0.99995 1.00428 1.21289 0.94607 0.97372 0.94620 1.20963 0.93668 0.97675 1.00752 1.19865 0.94617 0.95962 0.96421 1.21025 0.87076 0.94385 0.93795 1.86587 1.20735 1.67445 1.62423 1.21043 0.94898 1.00147 0.96976 1.21561 0.93589 0.95222 0.97755 1.23109 1.00926 1.04889 0.94786 1.22740 1.02649 0.93658 1.02457 0.92106 0.91578 0.90543 0.84272 0.85084 0.92443 0.92356 0.77164 0.85061 0.83839 0.91004 0.89676 0.89943 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.96 55.43 0.77 -25.77 16 2 C 0.08 2.25 5.43 -17.82 -0.10 2.16 16 3 Si 0.87 22.30 24.22 -169.99 -4.12 18.19 16 4 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.47 6.38 56.52 0.36 -6.11 16 7 C -0.48 -13.53 9.57 -34.44 -0.33 -13.86 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 9 C 0.00 0.10 1.82 -155.66 -0.28 -0.18 16 10 C 0.09 2.04 4.24 37.16 0.16 2.20 16 11 O -0.35 -7.04 7.76 -40.53 -0.31 -7.36 16 12 C 0.50 9.54 7.88 34.61 0.27 9.82 16 13 O -0.51 -11.10 16.12 -19.24 -0.31 -11.41 16 14 C -0.11 -1.65 5.87 -104.98 -0.62 -2.27 16 15 C -0.06 -0.79 9.59 -39.17 -0.38 -1.16 16 16 C -0.11 -1.18 9.68 -39.64 -0.38 -1.57 16 17 C -0.07 -0.69 5.52 -104.53 -0.58 -1.26 16 18 C 0.11 0.80 7.16 36.00 0.26 1.06 16 19 O -0.57 -4.48 13.64 -35.23 -0.48 -4.96 16 20 C -0.11 -1.19 9.68 -39.64 -0.38 -1.57 16 21 C -0.06 -0.81 9.62 -39.17 -0.38 -1.18 16 22 C -0.20 -4.28 9.66 -26.69 -0.26 -4.54 16 23 C -0.18 -3.67 9.63 -26.69 -0.26 -3.93 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.07 1.66 2.50 -51.93 -0.13 1.53 16 26 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 27 H 0.14 1.76 7.67 -52.48 -0.40 1.36 16 28 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 29 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.38 1.05 9.12 45.56 0.42 1.47 16 32 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.14 1.77 7.63 -52.49 -0.40 1.37 16 34 H 0.07 1.45 7.81 -51.93 -0.41 1.04 16 35 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.08 1.48 7.51 -51.93 -0.39 1.09 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -33.37 316.95 -6.79 -40.16 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -3.86 Total: 2.67 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -3.25 Total: -16.30 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.77 Total: -25.77 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -1.11 Total: -23.73 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.12 Total: 18.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.37 -6.79 -40.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849639265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.784 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds