Wall clock time and date at job start Mon Mar 30 2020 01:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48492 * 109.47153 * 275.31161 * 3 2 1 5 5 H 1.48503 * 109.46812 * 35.31016 * 3 2 1 6 6 H 1.48498 * 109.46950 * 155.30301 * 3 2 1 7 7 C 1.37880 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99928 * 348.75090 * 7 2 1 9 9 C 1.50694 * 119.99919 * 168.74586 * 7 2 1 10 10 C 1.52997 * 115.55399 * 323.31133 * 9 7 2 11 11 O 1.45200 * 109.47398 * 184.78557 * 10 9 7 12 12 C 1.34714 * 117.00022 * 181.55884 * 11 10 9 13 13 O 1.21470 * 120.00025 * 5.80481 * 12 11 10 14 14 C 1.47725 * 119.99708 * 185.79845 * 12 11 10 15 15 C 1.39627 * 120.14506 * 173.69407 * 14 12 11 16 16 C 1.37948 * 119.84801 * 179.97438 * 15 14 12 17 17 C 1.38365 * 120.14676 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.84703 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47227 * 90.00057 * 18 17 16 20 20 C 1.38366 * 120.30440 * 0.26968 * 17 16 15 21 21 C 1.37942 * 120.15015 * 359.45687 * 20 17 16 22 22 C 1.53003 * 117.49754 * 108.98179 * 9 7 2 23 23 C 1.53001 * 117.49658 * 177.63753 * 9 7 2 24 24 H 0.96997 * 120.00097 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46813 * 64.78589 * 10 9 7 26 26 H 1.09000 * 109.47197 * 304.79522 * 10 9 7 27 27 H 1.08007 * 120.08041 * 359.95416 * 15 14 12 28 28 H 1.08004 * 119.92683 * 179.97438 * 16 15 14 29 29 H 1.08999 * 109.47244 * 330.00172 * 18 17 16 30 30 H 1.09004 * 109.47192 * 209.99851 * 18 17 16 31 31 H 0.96705 * 114.00300 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.92661 * 179.72708 * 20 17 16 33 33 H 1.08001 * 120.07838 * 180.27402 * 21 20 17 34 34 H 1.09000 * 117.50010 * 215.00471 * 22 9 7 35 35 H 1.09004 * 117.49892 * 0.02562 * 22 9 7 36 36 H 1.09000 * 117.50278 * 359.97438 * 23 9 7 37 37 H 1.09000 * 117.49724 * 144.97442 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3844 2.1112 -1.3940 5 1 1.5072 2.6177 0.8093 6 1 3.5983 1.4104 0.5850 7 6 2.0046 -1.1941 0.0005 8 1 1.4802 -2.1203 0.1834 9 6 3.4898 -1.2067 -0.2542 10 6 3.9916 -0.1915 -1.2830 11 8 5.4118 -0.3927 -1.5086 12 6 6.0193 0.4468 -2.3694 13 8 5.4068 1.3866 -2.8356 14 6 7.4302 0.2245 -2.7464 15 6 8.0240 1.0110 -3.7356 16 6 9.3421 0.7985 -4.0824 17 6 10.0754 -0.1917 -3.4528 18 6 11.5147 -0.4184 -3.8374 19 8 12.3597 0.3951 -3.0211 20 6 9.4914 -0.9786 -2.4760 21 6 8.1759 -0.7732 -2.1155 22 6 4.4067 -1.5261 0.9284 23 6 4.2068 -2.5565 -0.1858 24 1 -0.4850 0.8400 -0.0004 25 1 3.8225 0.8184 -0.9093 26 1 3.4520 -0.3271 -2.2203 27 1 7.4525 1.7837 -4.2284 28 1 9.8026 1.4058 -4.8477 29 1 11.6570 -0.1531 -4.8850 30 1 11.7691 -1.4681 -3.6905 31 1 13.3025 0.3006 -3.2142 32 1 10.0682 -1.7527 -1.9916 33 1 7.7226 -1.3852 -1.3498 34 1 5.3673 -1.0130 0.9734 35 1 3.9355 -1.7275 1.8905 36 1 3.6044 -3.4354 0.0439 37 1 5.0358 -2.7215 -0.8741 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849639265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:02 Heat of formation + Delta-G solvation = -94.601022 kcal Electronic energy + Delta-G solvation = -20726.573318 eV Core-core repulsion = 17434.445585 eV Total energy + Delta-G solvation = -3292.127733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81314 -40.22841 -38.87774 -37.46132 -37.00219 -34.45235 -33.10940 -32.11494 -29.74607 -28.03871 -26.90887 -23.89424 -23.70600 -23.11542 -21.75017 -21.14424 -19.37435 -18.88644 -18.33633 -17.93766 -17.71012 -16.80542 -16.65838 -16.29461 -15.94179 -15.31963 -15.28300 -14.80801 -14.73589 -14.50858 -14.39138 -13.94064 -13.69505 -13.45012 -13.09606 -12.76780 -12.45591 -12.31877 -12.18324 -12.10809 -11.96896 -11.59660 -11.48424 -11.21363 -10.94152 -10.69567 -10.33322 -10.08004 -10.06798 -8.48492 -6.44643 -0.50420 0.30491 1.18722 1.23378 1.26556 1.30730 1.51765 2.14462 2.60319 2.71623 3.30877 3.41317 3.58225 3.73550 3.88933 3.90816 3.97211 4.10926 4.12837 4.20464 4.29447 4.42006 4.56547 4.61685 4.71328 4.74202 4.91860 4.94427 4.97272 5.12160 5.20002 5.23465 5.36228 5.43872 5.53051 5.55367 5.76952 6.16525 6.51853 6.56251 6.94833 7.14488 8.67755 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.004140 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.479372 B = 6762.175845 C = 7288.372991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.033 3.967 3 Si 0.925 3.075 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.485 4.485 8 H 0.055 0.945 9 C -0.034 4.034 10 C 0.096 3.904 11 O -0.339 6.339 12 C 0.496 3.504 13 O -0.545 6.545 14 C -0.139 4.139 15 C -0.069 4.069 16 C -0.110 4.110 17 C -0.063 4.063 18 C 0.114 3.886 19 O -0.590 6.590 20 C -0.110 4.110 21 C -0.066 4.066 22 C -0.183 4.183 23 C -0.153 4.153 24 H 0.272 0.728 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.133 0.867 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.403 0.597 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.485 -1.883 -8.463 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.167 4.167 3 Si 0.754 3.246 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.174 1.174 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.035 4.035 10 C 0.023 3.977 11 O -0.255 6.255 12 C 0.343 3.657 13 O -0.437 6.437 14 C -0.140 4.140 15 C -0.087 4.087 16 C -0.128 4.128 17 C -0.063 4.063 18 C 0.037 3.963 19 O -0.400 6.400 20 C -0.128 4.128 21 C -0.084 4.084 22 C -0.220 4.220 23 C -0.190 4.190 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.176 0.824 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.254 0.746 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 26.524 -1.341 -8.310 27.827 hybrid contribution -0.410 0.936 -0.180 1.037 sum 26.114 -0.405 -8.489 27.462 Atomic orbital electron populations 1.69984 1.07606 1.28378 1.50595 1.25602 0.95208 1.01772 0.94093 0.86291 0.79196 0.80673 0.78429 1.20792 1.21070 1.17438 1.20469 0.89715 0.94049 1.48004 0.92642 1.19249 0.92394 0.95837 0.96010 1.23134 0.75925 0.99171 0.99475 1.86473 1.25851 1.54784 1.58366 1.22014 0.88921 0.79358 0.75436 1.90800 1.67725 1.31596 1.53594 1.19224 0.89150 1.02707 1.02909 1.21378 0.95799 0.97177 0.94388 1.21281 0.92457 0.97961 1.01063 1.20383 0.96464 0.94504 0.94965 1.21121 0.84871 0.95610 0.94698 1.86513 1.22666 1.67838 1.62964 1.21381 0.93958 1.00629 0.96829 1.21655 0.94524 0.94556 0.97676 1.23093 1.00492 1.04410 0.94046 1.22815 1.02151 0.92117 1.01867 0.91875 0.93274 0.91989 0.84924 0.82371 0.90320 0.90155 0.74606 0.82205 0.83629 0.89137 0.89734 0.89625 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.96 21.45 0.30 -57.30 16 2 C 0.03 1.96 5.43 84.65 0.46 2.42 16 3 Si 0.93 47.30 24.22 68.60 1.66 48.97 16 4 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 5 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.25 -12.18 6.38 99.48 0.64 -11.54 16 7 C -0.49 -27.80 9.57 25.60 0.25 -27.56 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 9 C -0.03 -1.62 1.82 -52.93 -0.10 -1.72 16 10 C 0.10 4.51 4.24 71.98 0.31 4.82 16 11 O -0.34 -13.55 7.76 -56.24 -0.44 -13.99 16 12 C 0.50 19.01 7.88 70.33 0.55 19.57 16 13 O -0.55 -24.36 16.12 19.93 0.32 -24.04 16 14 C -0.14 -4.05 5.87 -20.10 -0.12 -4.17 16 15 C -0.07 -1.71 9.59 22.54 0.22 -1.50 16 16 C -0.11 -1.98 9.68 22.23 0.22 -1.77 16 17 C -0.06 -1.02 5.52 -19.80 -0.11 -1.13 16 18 C 0.11 1.04 7.16 71.24 0.51 1.55 16 19 O -0.59 -6.84 13.64 -148.98 -2.03 -8.87 16 20 C -0.11 -1.92 9.68 22.23 0.22 -1.70 16 21 C -0.07 -1.54 9.62 22.53 0.22 -1.32 16 22 C -0.18 -7.49 9.66 30.62 0.30 -7.19 16 23 C -0.15 -6.00 9.63 30.62 0.29 -5.70 16 24 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.05 2.49 2.50 -2.39 -0.01 2.48 16 26 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.13 3.36 7.67 -2.91 -0.02 3.34 16 28 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 29 H 0.08 0.41 8.08 -2.39 -0.02 0.40 16 30 H 0.08 0.41 8.08 -2.39 -0.02 0.40 16 31 H 0.40 0.57 9.12 -74.05 -0.68 -0.11 16 32 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.15 3.24 7.63 -2.91 -0.02 3.22 16 34 H 0.09 3.38 7.81 -2.39 -0.02 3.36 16 35 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.10 3.58 7.51 -2.39 -0.02 3.56 16 Total: -1.00 -74.21 316.95 3.37 -70.85 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.35 Total: 9.77 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.20 Total: -25.39 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.30 Total: -57.30 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -2.15 Total: -46.90 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.66 Total: 48.97 kcal Total: -74.21 3.37 -70.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849639265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.754 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds