Wall clock time and date at job start Mon Mar 30 2020 01:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86789 * 120.00230 * 2 1 4 4 H 1.48502 * 109.47695 * 270.00541 * 3 2 1 5 5 H 1.48507 * 109.47282 * 30.00307 * 3 2 1 6 6 H 1.48504 * 109.47557 * 150.00299 * 3 2 1 7 7 C 1.37880 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99875 * 175.05507 * 7 2 1 9 9 C 1.50703 * 120.00008 * 355.32197 * 7 2 1 10 10 C 1.53001 * 115.55099 * 279.20999 * 9 7 2 11 11 O 1.45201 * 109.46827 * 294.88178 * 10 9 7 12 12 C 1.34231 * 116.99622 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00056 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00064 * 180.02562 * 12 11 10 15 15 C 1.50698 * 109.47576 * 179.97438 * 14 12 11 16 16 C 1.38264 * 119.94117 * 269.72910 * 15 14 12 17 17 C 1.38145 * 120.05170 * 179.72054 * 16 15 14 18 18 C 1.38735 * 119.94673 * 0.56845 * 17 16 15 19 19 O 1.35895 * 120.05648 * 179.67825 * 18 17 16 20 20 C 1.38736 * 119.88319 * 359.70586 * 18 17 16 21 21 C 1.38136 * 119.94611 * 359.97438 * 20 18 17 22 22 C 1.53001 * 117.49709 * 133.50141 * 9 7 2 23 23 C 1.53000 * 60.00059 * 252.51331 * 22 9 7 24 24 H 0.96998 * 119.99922 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46946 * 54.88307 * 10 9 7 26 26 H 1.08998 * 109.46963 * 174.88191 * 10 9 7 27 27 H 1.09008 * 109.46950 * 300.00250 * 14 12 11 28 28 H 1.09004 * 109.46980 * 59.99560 * 14 12 11 29 29 H 1.07999 * 119.97428 * 359.97411 * 16 15 14 30 30 H 1.08006 * 120.02466 * 180.24746 * 17 16 15 31 31 H 0.96704 * 114.00476 * 270.02309 * 19 18 17 32 32 H 1.07998 * 120.02581 * 179.97438 * 20 18 17 33 33 H 1.08001 * 119.97391 * 180.02562 * 21 20 18 34 34 H 1.09005 * 117.49874 * 359.97438 * 22 9 7 35 35 H 1.08998 * 117.50103 * 145.01703 * 22 9 7 36 36 H 1.09002 * 117.49646 * 252.51586 * 23 22 9 37 37 H 1.08997 * 117.51925 * 107.47993 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1958 -0.0812 9 6 1.2547 -2.4971 0.1053 10 6 0.8316 -2.9020 1.5188 11 8 2.0132 -3.1570 2.3233 12 6 1.8141 -3.5260 3.5984 13 8 0.6899 -3.6320 4.0282 14 6 2.9929 -3.8070 4.4943 15 6 2.5010 -4.1981 5.8640 16 6 2.3005 -3.2278 6.8283 17 6 1.8441 -3.5831 8.0829 18 6 1.5983 -4.9162 8.3785 19 8 1.1556 -5.2689 9.6140 20 6 1.8058 -5.8884 7.4109 21 6 2.2559 -5.5272 6.1558 22 6 1.6414 -3.6155 -0.8645 23 6 0.3183 -2.8688 -1.0462 24 1 -0.4850 0.8400 0.0004 25 1 0.2521 -2.0963 1.9694 26 1 0.2227 -3.8048 1.4711 27 1 3.5831 -4.6212 4.0736 28 1 3.6113 -2.9127 4.5724 29 1 2.4968 -2.1908 6.5993 30 1 1.6837 -2.8244 8.8346 31 1 1.8625 -5.4642 10.2443 32 1 1.6156 -6.9269 7.6386 33 1 2.4172 -6.2837 5.4021 34 1 2.4378 -3.4086 -1.5794 35 1 1.5946 -4.6401 -0.4957 36 1 -0.5989 -3.4022 -0.7968 37 1 0.2444 -2.1708 -1.8801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849640939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:49 Heat of formation + Delta-G solvation = -84.201397 kcal Electronic energy + Delta-G solvation = -20488.292751 eV Core-core repulsion = 17196.615979 eV Total energy + Delta-G solvation = -3291.676772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.20659 -39.40137 -37.21081 -36.58252 -35.18066 -32.17842 -31.97560 -31.09855 -27.84179 -26.32111 -25.16025 -22.92926 -22.14863 -21.16991 -20.13697 -19.26438 -18.56100 -17.05172 -16.57487 -16.20696 -15.95160 -15.40030 -15.34193 -15.01864 -14.60025 -13.88142 -13.82973 -13.58213 -13.22073 -12.71106 -12.35962 -12.10733 -11.90217 -11.77845 -11.58470 -11.53921 -10.96622 -10.89512 -10.58657 -10.54720 -10.28611 -10.02405 -9.86230 -9.50061 -9.06824 -8.93914 -8.60995 -8.47072 -8.19275 -6.07598 -4.13333 1.06927 1.27617 2.76259 3.22226 3.27579 3.34781 3.38288 3.71354 4.06349 4.38005 4.61829 4.72320 4.87467 5.19157 5.20744 5.22028 5.26372 5.49822 5.54272 5.56217 5.76148 5.90933 5.97672 6.16021 6.23314 6.30413 6.31921 6.48247 6.51519 6.64741 6.69985 6.73751 7.03396 7.25067 7.34781 7.47995 7.48873 7.85077 8.34827 8.44990 8.87897 9.52326 11.01494 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.003873 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.607266 B = 7227.740063 C = 7857.324541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.117 3.883 11 O -0.338 6.338 12 C 0.452 3.548 13 O -0.515 6.515 14 C -0.077 4.077 15 C -0.075 4.075 16 C -0.086 4.086 17 C -0.144 4.144 18 C 0.100 3.900 19 O -0.500 6.500 20 C -0.145 4.145 21 C -0.087 4.087 22 C -0.205 4.205 23 C -0.145 4.145 24 H 0.261 0.739 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.387 0.613 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 -9.402 13.703 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.036 3.964 10 C 0.044 3.956 11 O -0.253 6.253 12 C 0.295 3.705 13 O -0.405 6.405 14 C -0.114 4.114 15 C -0.076 4.076 16 C -0.104 4.104 17 C -0.162 4.162 18 C 0.056 3.944 19 O -0.310 6.310 20 C -0.163 4.163 21 C -0.106 4.106 22 C -0.242 4.242 23 C -0.182 4.182 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.242 0.758 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.728 -9.204 13.528 17.336 hybrid contribution 0.520 0.887 0.225 1.053 sum 6.248 -8.317 13.753 17.244 Atomic orbital electron populations 1.70000 1.05895 1.26689 1.49211 1.25020 0.94868 0.99097 0.94537 0.86592 0.80003 0.83265 0.78176 1.20601 1.21176 1.19679 1.20385 0.92846 0.88352 1.51117 0.91902 1.18775 0.99330 0.93525 0.84763 1.22859 0.83239 0.98336 0.91183 1.86519 1.40467 1.76799 1.21518 1.23363 0.90431 0.74092 0.82622 1.90646 1.25717 1.48556 1.75556 1.20285 0.95575 1.05268 0.90309 1.19397 1.00328 0.93661 0.94171 1.20950 0.97647 0.99383 0.92430 1.21360 1.01066 0.95779 0.98004 1.18483 0.98035 0.91958 0.85920 1.84842 1.36051 1.90046 1.20078 1.21337 1.01398 0.99565 0.94029 1.20899 0.97870 0.95635 0.96149 1.22970 0.99527 0.95755 1.05971 1.22551 0.91440 1.01784 1.02446 0.92905 0.90815 0.94274 0.86988 0.86766 0.85367 0.85394 0.75752 0.85447 0.85526 0.90103 0.91569 0.91745 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 12.86 55.43 0.71 -24.15 16 2 C 0.07 1.85 5.44 -17.82 -0.10 1.75 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.49 -13.27 8.75 -34.44 -0.30 -13.57 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.91 1.62 -155.66 -0.25 0.65 16 10 C 0.12 2.78 5.29 37.16 0.20 2.98 16 11 O -0.34 -7.28 10.16 -39.26 -0.40 -7.68 16 12 C 0.45 8.47 7.95 36.01 0.29 8.76 16 13 O -0.52 -11.16 15.78 -18.75 -0.30 -11.45 16 14 C -0.08 -1.00 5.94 -29.03 -0.17 -1.18 16 15 C -0.08 -0.98 4.38 -104.60 -0.46 -1.44 16 16 C -0.09 -1.08 9.69 -39.61 -0.38 -1.46 16 17 C -0.14 -1.69 9.99 -39.43 -0.39 -2.08 16 18 C 0.10 1.17 6.71 -39.21 -0.26 0.90 16 19 O -0.50 -5.04 13.50 -19.41 -0.26 -5.30 16 20 C -0.14 -1.65 9.99 -39.43 -0.39 -2.04 16 21 C -0.09 -1.05 9.69 -39.61 -0.38 -1.43 16 22 C -0.21 -4.44 9.96 -26.73 -0.27 -4.71 16 23 C -0.14 -3.37 9.39 -26.73 -0.25 -3.62 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.07 1.94 8.13 -51.93 -0.42 1.52 16 26 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 27 H 0.11 1.17 8.09 -51.92 -0.42 0.75 16 28 H 0.11 1.29 8.08 -51.93 -0.42 0.87 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.39 1.81 9.06 45.56 0.41 2.22 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -32.57 330.31 -7.62 -40.19 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.20 Total: 3.98 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -3.13 Total: -16.49 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.71 Total: -24.15 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.96 Total: -24.43 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.57 -7.62 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849640939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.011 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds