Wall clock time and date at job start Mon Mar 30 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38295 * 119.87289 * 2 1 4 4 C 1.37946 * 120.21218 * 180.02562 * 3 2 1 5 5 C 1.39653 * 119.96001 * 359.97438 * 4 3 2 6 6 C 1.47743 * 120.12245 * 180.02562 * 5 4 3 7 7 O 1.21473 * 119.99780 * 185.03994 * 6 5 4 8 8 O 1.34710 * 120.00236 * 5.04182 * 6 5 4 9 9 C 1.45195 * 117.00161 * 185.03546 * 8 6 5 10 10 C 1.53001 * 109.47094 * 184.93985 * 9 8 6 11 11 C 1.50702 * 115.54977 * 54.23901 * 10 9 8 12 12 H 1.08000 * 119.99704 * 215.59385 * 11 10 9 13 13 C 1.37876 * 119.99986 * 35.32271 * 11 10 9 14 14 N 1.31512 * 119.99866 * 355.73437 * 13 11 10 15 15 Si 1.86798 * 119.99772 * 175.74055 * 13 11 10 16 16 H 1.48501 * 109.47210 * 90.00088 * 15 13 11 17 17 H 1.48504 * 109.47029 * 209.99476 * 15 13 11 18 18 H 1.48491 * 109.47343 * 329.99579 * 15 13 11 19 19 C 1.52998 * 117.49758 * 199.91077 * 10 9 8 20 20 C 1.53003 * 117.49433 * 268.57149 * 10 9 8 21 21 C 1.39536 * 119.75331 * 0.27294 * 5 4 3 22 22 C 1.38478 * 119.78938 * 359.49487 * 21 5 4 23 23 O 1.35916 * 119.98553 * 180.23009 * 22 21 5 24 24 H 1.09000 * 109.46762 * 90.00656 * 1 2 3 25 25 H 1.09002 * 109.46779 * 210.00159 * 1 2 3 26 26 H 1.08993 * 109.47454 * 330.00413 * 1 2 3 27 27 H 1.08004 * 119.89471 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.02146 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47513 * 64.93827 * 9 8 6 30 30 H 1.09005 * 109.47199 * 304.93393 * 9 8 6 31 31 H 0.97003 * 120.00034 * 185.00339 * 14 13 11 32 32 H 1.09002 * 117.49743 * 214.99594 * 19 10 9 33 33 H 1.08998 * 117.50154 * 0.02590 * 19 10 9 34 34 H 1.08999 * 117.50143 * 359.97438 * 20 10 9 35 35 H 1.09001 * 117.49285 * 144.97588 * 20 10 9 36 36 H 1.08008 * 120.10488 * 179.72656 * 21 5 4 37 37 H 0.96707 * 113.99368 * 270.25816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1992 0.0000 4 6 3.5753 1.2074 -0.0005 5 6 4.2799 0.0016 -0.0005 6 6 5.7573 0.0062 -0.0005 7 8 6.3679 -1.0399 -0.0930 8 8 6.4273 1.1703 0.1020 9 6 7.8731 1.1115 -0.0176 10 6 8.4635 2.4982 0.2463 11 6 8.0626 3.1378 1.5506 12 1 7.9118 4.2059 1.6043 13 6 7.8829 2.3588 2.6739 14 7 7.9790 1.0500 2.5887 15 14 7.5029 3.1625 4.3168 16 1 6.0322 3.2929 4.4757 17 1 8.0470 2.3245 5.4154 18 1 8.1273 4.5089 4.3654 19 6 9.8765 2.7745 -0.2712 20 6 8.6698 3.4189 -0.9582 21 6 3.5833 -1.2074 -0.0058 22 6 2.1986 -1.2037 -0.0003 23 8 1.5161 -2.3790 -0.0007 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5137 27 1 1.6521 2.1323 -0.0004 28 1 4.1101 2.1456 -0.0009 29 1 8.1418 0.7876 -1.0231 30 1 8.2695 0.4035 0.7103 31 1 7.7815 0.4978 3.3614 32 1 10.5162 3.4191 0.3317 33 1 10.3854 1.9686 -0.8000 34 1 8.3854 3.0366 -1.9385 35 1 8.5153 4.4873 -0.8071 36 1 4.1225 -2.1433 -0.0103 37 1 1.3186 -2.7189 -0.8843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849668835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:24 Heat of formation + Delta-G solvation = -79.138791 kcal Electronic energy + Delta-G solvation = -21106.804758 eV Core-core repulsion = 17815.347517 eV Total energy + Delta-G solvation = -3291.457241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12817 -39.00492 -36.85431 -36.40241 -34.92893 -32.76970 -32.17426 -29.93594 -27.85138 -26.19013 -25.31699 -22.74117 -22.41374 -21.27042 -20.31749 -19.15985 -18.27875 -16.73295 -16.65241 -15.87968 -15.48647 -15.28732 -15.08105 -14.65111 -14.54167 -13.85680 -13.64766 -13.42350 -13.04729 -12.49751 -12.31411 -12.15349 -11.89682 -11.59492 -11.51245 -11.36442 -11.01220 -10.79048 -10.62933 -10.50069 -10.34166 -9.95994 -9.55509 -9.29495 -8.98245 -8.84758 -8.76507 -8.54943 -8.25358 -5.97781 -4.11850 0.87954 1.31181 3.02143 3.27303 3.35085 3.37263 3.50836 3.92339 4.23100 4.36134 4.75961 4.82628 4.96451 5.15388 5.32332 5.40812 5.46005 5.52248 5.62380 5.71877 5.89164 6.00142 6.04882 6.20440 6.30626 6.44234 6.47346 6.50437 6.62676 6.65770 6.75158 6.81874 6.97638 7.22933 7.47217 7.56984 7.61312 7.92158 8.32316 8.69230 8.86827 9.50504 10.96640 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.005211 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.138618 B = 5371.930232 C = 5886.199239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.063 4.063 5 C -0.098 4.098 6 C 0.501 3.499 7 O -0.520 6.520 8 O -0.314 6.314 9 C 0.119 3.881 10 C 0.045 3.955 11 C -0.481 4.481 12 H 0.062 0.938 13 C 0.073 3.927 14 N -0.882 5.882 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.196 4.196 20 C -0.209 4.209 21 C -0.083 4.083 22 C 0.085 3.915 23 O -0.493 6.493 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.147 0.853 29 H 0.020 0.980 30 H 0.120 0.880 31 H 0.263 0.737 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 -2.118 -6.841 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.082 4.082 5 C -0.100 4.100 6 C 0.345 3.655 7 O -0.412 6.412 8 O -0.228 6.228 9 C 0.046 3.954 10 C 0.045 3.955 11 C -0.518 4.518 12 H 0.080 0.920 13 C -0.130 4.130 14 N -0.520 5.520 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.234 4.234 20 C -0.246 4.246 21 C -0.101 4.101 22 C 0.041 3.959 23 O -0.302 6.302 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.151 0.849 28 H 0.164 0.836 29 H 0.038 0.962 30 H 0.138 0.862 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -12.475 -2.495 -6.089 14.104 hybrid contribution -0.019 0.210 0.353 0.411 sum -12.494 -2.284 -5.735 13.936 Atomic orbital electron populations 1.20735 0.90582 1.03385 1.02324 1.20418 0.96806 0.92612 0.99133 1.20948 0.93895 0.97340 1.01759 1.21646 0.93978 0.98477 0.94049 1.19221 0.90934 0.93937 1.05886 1.20884 0.88097 0.83057 0.73474 1.90742 1.70076 1.33578 1.46840 1.86474 1.24337 1.31493 1.80460 1.22888 0.74297 1.00156 0.98096 1.18937 0.92961 0.91062 0.92548 1.20432 1.46569 0.93568 0.91230 0.91981 1.24966 0.94174 0.94808 0.99045 1.69756 1.48144 1.03554 1.30496 0.86501 0.78553 0.79289 0.83198 1.20526 1.21122 1.19785 1.22990 0.92644 1.02834 1.04897 1.22951 1.05349 0.99048 0.97261 1.21504 0.93158 0.98462 0.97020 1.18005 0.89176 0.85027 1.03726 1.84839 1.75905 1.36186 1.33271 0.91137 0.90773 0.91238 0.84937 0.83557 0.96170 0.86215 0.92680 0.89795 0.91421 0.91288 0.90327 0.84101 0.75885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.78 36.01 0.35 -0.66 16 2 C -0.09 -1.09 5.90 -104.38 -0.62 -1.71 16 3 C -0.12 -1.56 9.67 -39.67 -0.38 -1.94 16 4 C -0.06 -1.01 9.61 -39.16 -0.38 -1.38 16 5 C -0.10 -1.80 5.87 -105.00 -0.62 -2.42 16 6 C 0.50 11.21 7.88 34.62 0.27 11.49 16 7 O -0.52 -12.68 16.05 -19.25 -0.31 -12.99 16 8 O -0.31 -7.58 8.99 -40.52 -0.36 -7.94 16 9 C 0.12 2.96 4.45 37.16 0.17 3.12 16 10 C 0.05 1.13 2.21 -155.66 -0.34 0.78 16 11 C -0.48 -12.91 8.79 -34.44 -0.30 -13.22 16 12 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 13 C 0.07 1.96 5.35 -17.82 -0.10 1.87 16 14 N -0.88 -24.68 10.16 55.43 0.56 -24.12 16 15 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.20 -4.32 9.96 -26.69 -0.27 -4.58 16 20 C -0.21 -4.47 9.92 -26.69 -0.26 -4.73 16 21 C -0.08 -1.34 9.53 -39.01 -0.37 -1.71 16 22 C 0.08 1.15 6.67 -39.28 -0.26 0.89 16 23 O -0.49 -5.59 12.53 -19.48 -0.24 -5.83 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.67 7.52 -51.93 -0.39 0.28 16 26 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 28 H 0.15 2.36 7.62 -52.49 -0.40 1.96 16 29 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.12 3.32 5.76 -51.93 -0.30 3.02 16 31 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 32 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.14 2.30 7.66 -52.48 -0.40 1.90 16 37 H 0.39 2.44 9.06 45.56 0.41 2.85 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -31.12 322.88 -7.62 -38.74 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.00 Total: 5.44 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -3.11 Total: -14.20 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.56 Total: -24.12 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.92 Total: -26.76 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.12 -7.62 -38.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849668835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.397 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds