Wall clock time and date at job start Mon Mar 30 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38295 * 119.87289 * 2 1 4 4 C 1.37946 * 120.21218 * 180.02562 * 3 2 1 5 5 C 1.39653 * 119.96001 * 359.97438 * 4 3 2 6 6 C 1.47743 * 120.12245 * 180.02562 * 5 4 3 7 7 O 1.21473 * 119.99780 * 185.03994 * 6 5 4 8 8 O 1.34710 * 120.00236 * 5.04182 * 6 5 4 9 9 C 1.45195 * 117.00161 * 185.03546 * 8 6 5 10 10 C 1.53001 * 109.47094 * 184.93985 * 9 8 6 11 11 C 1.50702 * 115.54977 * 54.23901 * 10 9 8 12 12 H 1.08000 * 119.99704 * 215.59385 * 11 10 9 13 13 C 1.37876 * 119.99986 * 35.32271 * 11 10 9 14 14 N 1.31512 * 119.99866 * 355.73437 * 13 11 10 15 15 Si 1.86798 * 119.99772 * 175.74055 * 13 11 10 16 16 H 1.48501 * 109.47210 * 90.00088 * 15 13 11 17 17 H 1.48504 * 109.47029 * 209.99476 * 15 13 11 18 18 H 1.48491 * 109.47343 * 329.99579 * 15 13 11 19 19 C 1.52998 * 117.49758 * 199.91077 * 10 9 8 20 20 C 1.53003 * 117.49433 * 268.57149 * 10 9 8 21 21 C 1.39536 * 119.75331 * 0.27294 * 5 4 3 22 22 C 1.38478 * 119.78938 * 359.49487 * 21 5 4 23 23 O 1.35916 * 119.98553 * 180.23009 * 22 21 5 24 24 H 1.09000 * 109.46762 * 90.00656 * 1 2 3 25 25 H 1.09002 * 109.46779 * 210.00159 * 1 2 3 26 26 H 1.08993 * 109.47454 * 330.00413 * 1 2 3 27 27 H 1.08004 * 119.89471 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.02146 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47513 * 64.93827 * 9 8 6 30 30 H 1.09005 * 109.47199 * 304.93393 * 9 8 6 31 31 H 0.97003 * 120.00034 * 185.00339 * 14 13 11 32 32 H 1.09002 * 117.49743 * 214.99594 * 19 10 9 33 33 H 1.08998 * 117.50154 * 0.02590 * 19 10 9 34 34 H 1.08999 * 117.50143 * 359.97438 * 20 10 9 35 35 H 1.09001 * 117.49285 * 144.97588 * 20 10 9 36 36 H 1.08008 * 120.10488 * 179.72656 * 21 5 4 37 37 H 0.96707 * 113.99368 * 270.25816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1992 0.0000 4 6 3.5753 1.2074 -0.0005 5 6 4.2799 0.0016 -0.0005 6 6 5.7573 0.0062 -0.0005 7 8 6.3679 -1.0399 -0.0930 8 8 6.4273 1.1703 0.1020 9 6 7.8731 1.1115 -0.0176 10 6 8.4635 2.4982 0.2463 11 6 8.0626 3.1378 1.5506 12 1 7.9118 4.2059 1.6043 13 6 7.8829 2.3588 2.6739 14 7 7.9790 1.0500 2.5887 15 14 7.5029 3.1625 4.3168 16 1 6.0322 3.2929 4.4757 17 1 8.0470 2.3245 5.4154 18 1 8.1273 4.5089 4.3654 19 6 9.8765 2.7745 -0.2712 20 6 8.6698 3.4189 -0.9582 21 6 3.5833 -1.2074 -0.0058 22 6 2.1986 -1.2037 -0.0003 23 8 1.5161 -2.3790 -0.0007 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5137 27 1 1.6521 2.1323 -0.0004 28 1 4.1101 2.1456 -0.0009 29 1 8.1418 0.7876 -1.0231 30 1 8.2695 0.4035 0.7103 31 1 7.7815 0.4978 3.3614 32 1 10.5162 3.4191 0.3317 33 1 10.3854 1.9686 -0.8000 34 1 8.3854 3.0366 -1.9385 35 1 8.5153 4.4873 -0.8071 36 1 4.1225 -2.1433 -0.0103 37 1 1.3186 -2.7189 -0.8843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849668835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:23 Heat of formation + Delta-G solvation = -97.540372 kcal Electronic energy + Delta-G solvation = -21107.602710 eV Core-core repulsion = 17815.347517 eV Total energy + Delta-G solvation = -3292.255193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50780 -40.46535 -38.57217 -37.55601 -36.75681 -34.20356 -33.83451 -31.05495 -29.18073 -27.86547 -27.23478 -24.00444 -23.58397 -23.00122 -21.67509 -21.09547 -19.58445 -18.59022 -18.03194 -17.41820 -17.17966 -16.68380 -16.46068 -16.26424 -15.92947 -15.43165 -14.93007 -14.74223 -14.23140 -13.93548 -13.79790 -13.50956 -13.24462 -13.09680 -12.90980 -12.85135 -12.67582 -12.43551 -12.32167 -12.13009 -11.85667 -11.65841 -11.35051 -11.17933 -10.90968 -10.69176 -10.18639 -9.97473 -9.66103 -8.00158 -6.20689 -0.36931 0.19776 1.40628 1.42342 1.52115 1.56141 1.90237 2.41011 2.63034 3.02136 3.21792 3.54341 3.72183 3.81555 3.94109 4.11120 4.23057 4.30129 4.38148 4.55395 4.65390 4.74083 4.77718 4.85476 4.87228 4.91318 4.97210 5.14927 5.21346 5.25209 5.29739 5.41693 5.45034 5.51910 5.73397 5.79107 5.85566 6.31624 6.76520 6.79136 6.96078 7.43529 8.91105 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.005211 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.138618 B = 5371.930232 C = 5886.199239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 C -0.111 4.111 4 C -0.072 4.072 5 C -0.130 4.130 6 C 0.494 3.506 7 O -0.554 6.554 8 O -0.324 6.324 9 C 0.126 3.874 10 C 0.003 3.997 11 C -0.492 4.492 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.907 5.907 15 Si 0.954 3.046 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.263 1.263 19 C -0.187 4.187 20 C -0.184 4.184 21 C -0.096 4.096 22 C 0.094 3.906 23 O -0.495 6.495 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.169 0.831 28 H 0.137 0.863 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.256 0.744 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 -0.949 -7.344 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.076 4.076 3 C -0.129 4.129 4 C -0.090 4.090 5 C -0.131 4.131 6 C 0.341 3.659 7 O -0.449 6.449 8 O -0.238 6.238 9 C 0.052 3.948 10 C 0.003 3.997 11 C -0.530 4.530 12 H 0.078 0.922 13 C -0.173 4.173 14 N -0.546 5.546 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.225 4.225 20 C -0.221 4.221 21 C -0.115 4.115 22 C 0.049 3.951 23 O -0.308 6.308 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.186 0.814 28 H 0.155 0.845 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.146 0.854 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -15.129 -1.316 -6.619 16.566 hybrid contribution 0.694 -0.205 0.439 0.846 sum -14.436 -1.521 -6.180 15.777 Atomic orbital electron populations 1.20844 0.87407 1.04336 1.04157 1.20860 0.98905 0.91565 0.96243 1.21299 0.92420 0.99210 0.99942 1.21654 0.95507 0.97066 0.94807 1.19095 0.88339 0.95893 1.09822 1.21717 0.89887 0.82108 0.72171 1.90696 1.71175 1.34317 1.48662 1.86471 1.23912 1.32576 1.80860 1.22633 0.75013 0.99782 0.97328 1.19076 0.95276 0.91796 0.93564 1.20687 1.46377 0.93500 0.92398 0.92227 1.25669 0.94423 0.95189 1.02044 1.69963 1.49348 1.04606 1.30656 0.85605 0.78365 0.78671 0.79386 1.20203 1.21404 1.18754 1.23004 0.91887 1.03110 1.04502 1.22970 1.03552 0.98923 0.96653 1.21506 0.94607 0.97206 0.98199 1.17999 0.88096 0.86448 1.02559 1.84783 1.75133 1.35401 1.35479 0.88637 0.90600 0.89556 0.81351 0.84483 0.95412 0.89552 0.93457 0.89675 0.90062 0.89447 0.89423 0.85437 0.73020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.78 71.24 0.70 -0.75 16 2 C -0.08 -1.59 5.90 -19.71 -0.12 -1.71 16 3 C -0.11 -2.53 9.67 22.21 0.21 -2.32 16 4 C -0.07 -2.27 9.61 22.54 0.22 -2.05 16 5 C -0.13 -4.91 5.87 -20.11 -0.12 -5.03 16 6 C 0.49 23.38 7.88 70.34 0.55 23.94 16 7 O -0.55 -28.80 16.05 19.92 0.32 -28.48 16 8 O -0.32 -16.34 8.99 -56.20 -0.51 -16.84 16 9 C 0.13 6.51 4.45 71.98 0.32 6.83 16 10 C 0.00 0.16 2.21 -52.93 -0.12 0.05 16 11 C -0.49 -26.71 8.79 25.60 0.23 -26.49 16 12 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 13 C 0.03 1.44 5.35 84.65 0.45 1.89 16 14 N -0.91 -52.67 10.16 21.45 0.22 -52.46 16 15 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 19 C -0.19 -8.12 9.96 30.62 0.30 -7.82 16 20 C -0.18 -7.62 9.92 30.62 0.30 -7.32 16 21 C -0.10 -3.17 9.53 22.64 0.22 -2.95 16 22 C 0.09 2.37 6.67 22.47 0.15 2.52 16 23 O -0.50 -9.98 12.53 -92.61 -1.16 -11.14 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.03 7.52 -2.39 -0.02 1.01 16 26 H 0.09 0.90 8.08 -2.39 -0.02 0.89 16 27 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 28 H 0.14 4.48 7.62 -2.91 -0.02 4.46 16 29 H 0.03 1.34 8.09 -2.39 -0.02 1.32 16 30 H 0.09 5.06 5.76 -2.38 -0.01 5.05 16 31 H 0.26 14.58 8.32 -92.71 -0.77 13.81 16 32 H 0.08 3.63 8.14 -2.39 -0.02 3.62 16 33 H 0.08 3.26 8.14 -2.39 -0.02 3.25 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.13 4.41 7.66 -2.91 -0.02 4.38 16 37 H 0.41 3.96 9.06 -74.05 -0.67 3.29 16 Total: -1.00 -69.68 322.88 4.62 -65.06 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.42 Total: 19.35 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 3.30 Total: -21.21 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.22 Total: -52.46 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -1.35 Total: -56.46 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -69.68 4.62 -65.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849668835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.485 kcal (2) G-P(sol) polarization free energy of solvation -69.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds