Wall clock time and date at job start Mon Mar 30 2020 01:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38096 * 119.95663 * 2 1 4 4 C 1.38515 * 120.40427 * 180.02562 * 3 2 1 5 5 C 1.37814 * 120.30714 * 359.97438 * 4 3 2 6 6 C 1.39722 * 119.90046 * 359.97438 * 5 4 3 7 7 C 1.47407 * 120.19583 * 179.97438 * 6 5 4 8 8 O 1.21504 * 119.99728 * 185.12254 * 7 6 5 9 9 O 1.34746 * 119.99880 * 5.11773 * 7 6 5 10 10 C 1.45202 * 116.99896 * 185.06020 * 9 7 6 11 11 C 1.53002 * 109.46973 * 175.03608 * 10 9 7 12 12 C 1.50697 * 115.55224 * 305.75451 * 11 10 9 13 13 H 1.07999 * 119.99816 * 144.40794 * 12 11 10 14 14 C 1.37875 * 120.00149 * 324.40855 * 12 11 10 15 15 N 1.31516 * 120.00019 * 4.54971 * 14 12 11 16 16 Si 1.86799 * 120.00045 * 184.54175 * 14 12 11 17 17 H 1.48497 * 109.46953 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46915 * 120.00158 * 16 14 12 19 19 H 1.48499 * 109.47286 * 240.00000 * 16 14 12 20 20 C 1.53010 * 117.49677 * 160.08281 * 11 10 9 21 21 C 1.53000 * 117.49755 * 91.42738 * 11 10 9 22 22 C 1.38663 * 119.95319 * 180.23087 * 2 1 3 23 23 O 1.35639 * 120.15375 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.46837 * 89.99817 * 1 2 3 25 25 H 1.08998 * 109.47038 * 209.99960 * 1 2 3 26 26 H 1.09003 * 109.46802 * 329.99934 * 1 2 3 27 27 H 1.08004 * 119.79698 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.84712 * 179.97438 * 4 3 2 29 29 H 1.07996 * 120.04844 * 180.02562 * 5 4 3 30 30 H 1.08991 * 109.46988 * 295.03654 * 10 9 7 31 31 H 1.08998 * 109.46934 * 55.03749 * 10 9 7 32 32 H 0.96993 * 119.99902 * 184.99946 * 15 14 12 33 33 H 1.08998 * 117.49284 * 0.02562 * 20 11 10 34 34 H 1.08997 * 117.49552 * 145.01569 * 20 11 10 35 35 H 1.08994 * 117.50057 * 214.98060 * 21 11 10 36 36 H 1.09003 * 117.49776 * 359.97438 * 21 11 10 37 37 H 0.96701 * 113.99654 * 270.20435 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1965 0.0000 4 6 3.5818 1.2073 -0.0005 5 6 4.2865 0.0230 -0.0005 6 6 3.6018 -1.1950 0.0005 7 6 4.3490 -2.4656 0.0000 8 8 3.7534 -3.5206 -0.0931 9 8 5.6925 -2.4571 0.1025 10 6 6.3709 -3.7352 -0.0182 11 6 7.8846 -3.5128 -0.0003 12 6 8.4097 -2.5332 -1.0180 13 1 9.2414 -1.8905 -0.7698 14 6 7.8284 -2.4575 -2.2659 15 7 6.7604 -3.1749 -2.5385 16 14 8.5576 -1.3356 -3.5694 17 1 9.7483 -0.6422 -3.0158 18 1 8.9596 -2.1433 -4.7490 19 1 7.5449 -0.3301 -3.9799 20 6 8.7704 -4.7101 0.3505 21 6 8.5910 -3.5696 1.3556 22 6 2.1994 -1.2014 -0.0048 23 8 1.5234 -2.3773 -0.0101 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6526 2.1295 -0.0004 28 1 4.1119 2.1482 -0.0009 29 1 5.3664 0.0363 -0.0005 30 1 6.0881 -4.3768 0.8162 31 1 6.0847 -4.2113 -0.9560 32 1 6.3943 -3.1776 -3.4367 33 1 8.2748 -5.6561 0.5681 34 1 9.7331 -4.7889 -0.1546 35 1 9.4357 -2.8987 1.5116 36 1 7.9773 -3.7650 2.2350 37 1 1.3243 -2.7205 0.8718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849671400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:25 Heat of formation + Delta-G solvation = -76.899841 kcal Electronic energy + Delta-G solvation = -21457.940739 eV Core-core repulsion = 18166.580587 eV Total energy + Delta-G solvation = -3291.360153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16061 -38.67525 -36.65922 -36.48503 -34.75470 -32.75260 -32.16832 -30.12724 -26.95304 -26.43079 -25.40174 -23.61005 -21.60988 -21.26436 -20.01908 -19.13746 -18.12774 -16.81344 -16.65250 -15.85304 -15.61093 -15.15958 -15.03759 -14.56328 -14.25735 -13.82556 -13.46663 -13.23252 -13.01653 -12.46737 -12.18774 -12.02844 -11.85838 -11.69779 -11.46507 -11.30899 -11.05936 -10.73292 -10.51156 -10.49096 -10.33188 -9.87650 -9.38782 -9.26639 -8.94991 -8.77045 -8.72811 -8.48360 -8.23666 -5.98739 -4.11470 0.95289 1.34852 3.15644 3.25971 3.35115 3.38205 3.60614 3.98456 4.32915 4.36365 4.80206 4.91319 4.99886 5.17741 5.29735 5.48143 5.49644 5.55378 5.70979 5.77641 5.86802 6.05926 6.13664 6.24192 6.39428 6.42942 6.51089 6.52749 6.64182 6.69572 6.82726 6.86522 7.00407 7.24147 7.49061 7.66326 7.81702 7.92385 8.33378 8.77321 8.89378 9.50853 10.97017 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.005911 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.501455 B = 4736.170538 C = 5420.786070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.134 4.134 3 C -0.083 4.083 4 C -0.142 4.142 5 C -0.049 4.049 6 C -0.135 4.135 7 C 0.501 3.499 8 O -0.510 6.510 9 O -0.318 6.318 10 C 0.122 3.878 11 C 0.045 3.955 12 C -0.478 4.478 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.881 5.881 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.196 4.196 21 C -0.209 4.209 22 C 0.162 3.838 23 O -0.473 6.473 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.019 0.981 31 H 0.118 0.882 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 7.391 6.271 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.135 4.135 3 C -0.101 4.101 4 C -0.160 4.160 5 C -0.067 4.067 6 C -0.137 4.137 7 C 0.345 3.655 8 O -0.401 6.401 9 O -0.232 6.232 10 C 0.049 3.951 11 C 0.044 3.956 12 C -0.516 4.516 13 H 0.080 0.920 14 C -0.130 4.130 15 N -0.519 5.519 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.234 4.234 21 C -0.246 4.246 22 C 0.117 3.883 23 O -0.283 6.283 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.165 0.835 30 H 0.037 0.963 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.946 7.116 5.512 13.414 hybrid contribution 0.465 0.259 -0.290 0.606 sum -9.481 7.375 5.222 13.097 Atomic orbital electron populations 1.20602 0.90353 1.02441 1.02541 1.20108 0.96798 0.92170 1.04389 1.21088 0.94272 0.97028 0.97684 1.21139 0.93992 0.98358 1.02527 1.21590 1.01586 0.90573 0.92957 1.19855 0.92575 0.92946 1.08315 1.20687 0.82610 0.88328 0.73876 1.90766 1.70528 1.32865 1.45960 1.86474 1.17791 1.38438 1.80544 1.22859 0.90502 0.80346 1.01430 1.18959 0.88300 0.96015 0.92309 1.20489 1.15462 1.19114 0.96499 0.91960 1.24959 0.93900 0.95516 0.98617 1.69800 1.20648 1.41132 1.20333 0.86477 0.79110 0.80599 0.81507 1.19677 1.20917 1.20896 1.22986 1.02699 0.92778 1.04921 1.22947 1.04300 1.03172 0.94206 1.18309 0.88006 0.85601 0.96432 1.84787 1.75430 1.35206 1.32906 0.91131 0.91429 0.91691 0.85497 0.85179 0.83489 0.96258 0.86483 0.92782 0.91434 0.89807 0.90349 0.91316 0.75384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 9.78 36.01 0.35 -0.67 16 2 C -0.13 -1.77 5.89 -104.51 -0.62 -2.38 16 3 C -0.08 -0.98 9.68 -39.53 -0.38 -1.36 16 4 C -0.14 -1.87 10.02 -39.63 -0.40 -2.26 16 5 C -0.05 -0.82 9.61 -39.18 -0.38 -1.19 16 6 C -0.14 -2.57 5.89 -104.86 -0.62 -3.18 16 7 C 0.50 11.48 7.87 34.46 0.27 11.75 16 8 O -0.51 -12.52 14.95 -26.57 -0.40 -12.92 16 9 O -0.32 -7.82 9.01 -40.62 -0.37 -8.19 16 10 C 0.12 3.08 4.38 37.16 0.16 3.24 16 11 C 0.04 1.12 2.21 -155.66 -0.34 0.77 16 12 C -0.48 -12.87 8.79 -34.44 -0.30 -13.18 16 13 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 14 C 0.07 1.96 5.36 -17.82 -0.10 1.86 16 15 N -0.88 -24.68 10.17 55.43 0.56 -24.12 16 16 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.20 -4.36 9.96 -26.69 -0.27 -4.62 16 21 C -0.21 -4.53 9.92 -26.69 -0.26 -4.80 16 22 C 0.16 2.67 6.69 -38.67 -0.26 2.41 16 23 O -0.47 -7.66 10.64 -40.44 -0.43 -8.09 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.63 7.54 -51.93 -0.39 0.24 16 26 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.15 2.58 7.62 -52.49 -0.40 2.18 16 30 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.12 3.28 5.88 -51.93 -0.31 2.98 16 32 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.39 4.59 9.06 45.56 0.41 5.00 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -31.47 320.92 -7.98 -39.45 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.03 Total: 6.72 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.13 Total: -13.62 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.56 Total: -24.12 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -1.19 Total: -29.20 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.47 -7.98 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849671400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.453 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds