Wall clock time and date at job start Mon Mar 30 2020 01:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38096 * 119.95663 * 2 1 4 4 C 1.38515 * 120.40427 * 180.02562 * 3 2 1 5 5 C 1.37814 * 120.30714 * 359.97438 * 4 3 2 6 6 C 1.39722 * 119.90046 * 359.97438 * 5 4 3 7 7 C 1.47407 * 120.19583 * 179.97438 * 6 5 4 8 8 O 1.21504 * 119.99728 * 185.12254 * 7 6 5 9 9 O 1.34746 * 119.99880 * 5.11773 * 7 6 5 10 10 C 1.45202 * 116.99896 * 185.06020 * 9 7 6 11 11 C 1.53002 * 109.46973 * 175.03608 * 10 9 7 12 12 C 1.50697 * 115.55224 * 305.75451 * 11 10 9 13 13 H 1.07999 * 119.99816 * 144.40794 * 12 11 10 14 14 C 1.37875 * 120.00149 * 324.40855 * 12 11 10 15 15 N 1.31516 * 120.00019 * 4.54971 * 14 12 11 16 16 Si 1.86799 * 120.00045 * 184.54175 * 14 12 11 17 17 H 1.48497 * 109.46953 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46915 * 120.00158 * 16 14 12 19 19 H 1.48499 * 109.47286 * 240.00000 * 16 14 12 20 20 C 1.53010 * 117.49677 * 160.08281 * 11 10 9 21 21 C 1.53000 * 117.49755 * 91.42738 * 11 10 9 22 22 C 1.38663 * 119.95319 * 180.23087 * 2 1 3 23 23 O 1.35639 * 120.15375 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.46837 * 89.99817 * 1 2 3 25 25 H 1.08998 * 109.47038 * 209.99960 * 1 2 3 26 26 H 1.09003 * 109.46802 * 329.99934 * 1 2 3 27 27 H 1.08004 * 119.79698 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.84712 * 179.97438 * 4 3 2 29 29 H 1.07996 * 120.04844 * 180.02562 * 5 4 3 30 30 H 1.08991 * 109.46988 * 295.03654 * 10 9 7 31 31 H 1.08998 * 109.46934 * 55.03749 * 10 9 7 32 32 H 0.96993 * 119.99902 * 184.99946 * 15 14 12 33 33 H 1.08998 * 117.49284 * 0.02562 * 20 11 10 34 34 H 1.08997 * 117.49552 * 145.01569 * 20 11 10 35 35 H 1.08994 * 117.50057 * 214.98060 * 21 11 10 36 36 H 1.09003 * 117.49776 * 359.97438 * 21 11 10 37 37 H 0.96701 * 113.99654 * 270.20435 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1965 0.0000 4 6 3.5818 1.2073 -0.0005 5 6 4.2865 0.0230 -0.0005 6 6 3.6018 -1.1950 0.0005 7 6 4.3490 -2.4656 0.0000 8 8 3.7534 -3.5206 -0.0931 9 8 5.6925 -2.4571 0.1025 10 6 6.3709 -3.7352 -0.0182 11 6 7.8846 -3.5128 -0.0003 12 6 8.4097 -2.5332 -1.0180 13 1 9.2414 -1.8905 -0.7698 14 6 7.8284 -2.4575 -2.2659 15 7 6.7604 -3.1749 -2.5385 16 14 8.5576 -1.3356 -3.5694 17 1 9.7483 -0.6422 -3.0158 18 1 8.9596 -2.1433 -4.7490 19 1 7.5449 -0.3301 -3.9799 20 6 8.7704 -4.7101 0.3505 21 6 8.5910 -3.5696 1.3556 22 6 2.1994 -1.2014 -0.0048 23 8 1.5234 -2.3773 -0.0101 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6526 2.1295 -0.0004 28 1 4.1119 2.1482 -0.0009 29 1 5.3664 0.0363 -0.0005 30 1 6.0881 -4.3768 0.8162 31 1 6.0847 -4.2113 -0.9560 32 1 6.3943 -3.1776 -3.4367 33 1 8.2748 -5.6561 0.5681 34 1 9.7331 -4.7889 -0.1546 35 1 9.4357 -2.8987 1.5116 36 1 7.9773 -3.7650 2.2350 37 1 1.3243 -2.7205 0.8718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849671400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:25 Heat of formation + Delta-G solvation = -94.928318 kcal Electronic energy + Delta-G solvation = -21458.722513 eV Core-core repulsion = 18166.580587 eV Total energy + Delta-G solvation = -3292.141926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57446 -40.24437 -38.46523 -37.72003 -36.58957 -34.20812 -33.83544 -31.31875 -28.50416 -27.73541 -27.39752 -25.03679 -23.03336 -22.73833 -21.55853 -21.09335 -19.34101 -18.54993 -18.37401 -17.38467 -17.22535 -16.68610 -16.49526 -16.35659 -15.64130 -15.38155 -14.87459 -14.59641 -14.17611 -13.85677 -13.74526 -13.49054 -13.19649 -13.11281 -12.98045 -12.80707 -12.67178 -12.43822 -12.31329 -12.14116 -11.84907 -11.67298 -11.23881 -11.07591 -10.87833 -10.70080 -10.19006 -9.93790 -9.59428 -8.02070 -6.21223 -0.31431 0.23319 1.39306 1.42157 1.53405 1.64240 2.00461 2.40980 2.67406 3.03320 3.17748 3.54176 3.76959 3.86471 4.00326 4.22147 4.29691 4.33796 4.36962 4.53391 4.65449 4.72671 4.80029 4.84017 4.87688 4.89546 4.99300 5.17166 5.25692 5.28346 5.37771 5.42437 5.43440 5.50327 5.79081 5.82341 5.86327 6.30959 6.73506 6.77446 7.02480 7.43027 8.91250 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.005911 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.501455 B = 4736.170538 C = 5420.786070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.129 4.129 3 C -0.062 4.062 4 C -0.133 4.133 5 C -0.066 4.066 6 C -0.176 4.176 7 C 0.493 3.507 8 O -0.541 6.541 9 O -0.330 6.330 10 C 0.130 3.870 11 C 0.003 3.997 12 C -0.491 4.491 13 H 0.059 0.941 14 C 0.027 3.973 15 N -0.907 5.907 16 Si 0.955 3.045 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.284 1.284 20 C -0.186 4.186 21 C -0.186 4.186 22 C 0.150 3.850 23 O -0.490 6.490 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.176 0.824 28 H 0.164 0.836 29 H 0.127 0.873 30 H 0.024 0.976 31 H 0.084 0.916 32 H 0.256 0.744 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 10.036 6.822 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.130 4.130 3 C -0.080 4.080 4 C -0.151 4.151 5 C -0.084 4.084 6 C -0.177 4.177 7 C 0.340 3.660 8 O -0.434 6.434 9 O -0.245 6.245 10 C 0.056 3.944 11 C 0.002 3.998 12 C -0.528 4.528 13 H 0.077 0.923 14 C -0.172 4.172 15 N -0.546 5.546 16 Si 0.780 3.220 17 H -0.186 1.186 18 H -0.207 1.207 19 H -0.210 1.210 20 C -0.224 4.224 21 C -0.223 4.223 22 C 0.104 3.896 23 O -0.303 6.303 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.193 0.807 28 H 0.182 0.818 29 H 0.145 0.855 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -10.878 9.764 6.086 15.833 hybrid contribution 0.684 -0.520 -0.397 0.946 sum -10.194 9.244 5.688 14.890 Atomic orbital electron populations 1.20704 0.87679 1.04211 1.03211 1.20521 0.98651 0.91147 1.02666 1.21654 0.93780 0.98339 0.94231 1.21503 0.94874 0.98002 1.00705 1.21550 1.00917 0.91445 0.94532 1.19886 0.93668 0.91641 1.12525 1.21528 0.82004 0.89815 0.72679 1.90716 1.70681 1.34316 1.47697 1.86478 1.19074 1.38003 1.80926 1.22594 0.91146 0.80818 0.99794 1.19104 0.88321 0.97874 0.94470 1.20721 1.15321 1.19487 0.97267 0.92305 1.25667 0.94220 0.96850 1.00510 1.70000 1.21767 1.42696 1.20129 0.85551 0.78527 0.78831 0.79050 1.18641 1.20719 1.21000 1.23000 1.02001 0.92886 1.04482 1.22963 1.03711 1.02349 0.93289 1.18590 0.87197 0.86848 0.96973 1.84729 1.75230 1.35867 1.34435 0.90824 0.91235 0.88479 0.80690 0.81832 0.85513 0.95809 0.89777 0.93451 0.90111 0.89535 0.89441 0.89671 0.73743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.78 71.24 0.70 -0.95 16 2 C -0.13 -3.05 5.89 -19.79 -0.12 -3.16 16 3 C -0.06 -1.21 9.68 22.30 0.22 -1.00 16 4 C -0.13 -3.12 10.02 22.24 0.22 -2.90 16 5 C -0.07 -2.23 9.61 22.53 0.22 -2.01 16 6 C -0.18 -6.88 5.89 -20.02 -0.12 -6.99 16 7 C 0.49 23.91 7.87 70.24 0.55 24.46 16 8 O -0.54 -28.19 14.95 26.81 0.40 -27.79 16 9 O -0.33 -17.09 9.01 -56.56 -0.51 -17.60 16 10 C 0.13 6.87 4.38 71.98 0.32 7.18 16 11 C 0.00 0.14 2.21 -52.92 -0.12 0.02 16 12 C -0.49 -26.84 8.79 25.60 0.22 -26.62 16 13 H 0.06 3.17 7.82 -2.91 -0.02 3.14 16 14 C 0.03 1.48 5.36 84.65 0.45 1.93 16 15 N -0.91 -52.82 10.17 21.45 0.22 -52.60 16 16 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 C -0.19 -8.19 9.96 30.62 0.30 -7.88 16 21 C -0.19 -7.91 9.92 30.62 0.30 -7.60 16 22 C 0.15 4.90 6.69 22.86 0.15 5.06 16 23 O -0.49 -16.18 10.64 -68.66 -0.73 -16.91 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.11 7.54 -2.39 -0.02 1.10 16 26 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 27 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 28 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.13 4.67 7.62 -2.91 -0.02 4.65 16 30 H 0.02 1.19 8.09 -2.39 -0.02 1.17 16 31 H 0.08 5.01 5.88 -2.39 -0.01 4.99 16 32 H 0.26 14.53 8.32 -92.71 -0.77 13.76 16 33 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 35 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 37 H 0.40 9.84 9.06 -74.06 -0.67 9.17 16 Total: -1.00 -71.35 320.92 5.13 -66.22 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.42 Total: 23.48 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 3.31 Total: -20.46 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.22 Total: -52.60 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -0.84 Total: -62.30 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.35 5.13 -66.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849671400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.711 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds