Wall clock time and date at job start Mon Mar 30 2020 01:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.50701 * 109.46952 * 180.02562 * 14 12 11 16 16 C 1.38285 * 119.96957 * 269.72756 * 15 14 12 17 17 C 1.38248 * 120.11042 * 179.72634 * 16 15 14 18 18 C 1.38168 * 120.05291 * 0.54487 * 17 16 15 19 19 C 1.38705 * 119.94594 * 359.73239 * 18 17 16 20 20 O 1.35905 * 120.05709 * 179.97438 * 19 18 17 21 21 C 1.38124 * 119.97327 * 90.00104 * 15 14 12 22 22 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 23 23 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 24 24 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 26 26 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 27 27 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 28 28 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 29 29 H 1.07995 * 119.95147 * 359.97438 * 16 15 14 30 30 H 1.08000 * 119.97666 * 180.25054 * 17 16 15 31 31 H 1.08004 * 120.02836 * 179.70347 * 18 17 16 32 32 H 0.96699 * 113.99556 * 270.01521 * 20 19 18 33 33 H 1.08002 * 120.02740 * 359.97438 * 21 15 14 34 34 H 1.09003 * 117.50064 * 359.97438 * 22 9 7 35 35 H 1.08997 * 117.50444 * 145.01778 * 22 9 7 36 36 H 1.08997 * 117.50286 * 214.97535 * 23 9 7 37 37 H 1.09000 * 117.49777 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9275 -4.9568 5.4305 16 6 1.6224 -4.1233 6.4909 17 6 1.0437 -4.6402 7.6351 18 6 0.7791 -5.9932 7.7261 19 6 1.0895 -6.8322 6.6661 20 8 0.8306 -8.1636 6.7534 21 6 1.6650 -6.3101 5.5166 22 6 1.7501 -3.4765 -1.2119 23 6 0.4459 -2.7041 -1.4260 24 1 -0.4850 0.8401 0.0004 25 1 0.0685 -2.3412 1.6433 26 1 0.1031 -3.9677 0.9209 27 1 3.1883 -5.1437 3.7191 28 1 3.1533 -3.5170 4.4408 29 1 1.8328 -3.0662 6.4237 30 1 0.8025 -3.9866 8.4604 31 1 0.3313 -6.3973 8.6220 32 1 1.5594 -8.6826 7.1202 33 1 1.9072 -6.9613 4.6897 34 1 2.6136 -3.1810 -1.8078 35 1 1.6739 -4.5408 -0.9896 36 1 -0.4877 -3.2606 -1.3445 37 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849718448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:10 Heat of formation + Delta-G solvation = -84.064242 kcal Electronic energy + Delta-G solvation = -20532.151751 eV Core-core repulsion = 17240.480927 eV Total energy + Delta-G solvation = -3291.670824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21055 -39.37504 -37.13379 -36.59096 -35.19014 -32.77234 -31.97244 -30.01284 -28.30489 -26.48067 -25.19523 -22.71203 -22.21436 -21.18768 -20.20092 -19.26358 -18.11314 -17.02283 -16.61427 -16.36997 -16.14079 -15.45723 -15.35188 -15.00470 -14.59982 -13.98750 -13.83002 -13.26877 -13.19087 -12.70552 -12.38574 -12.08325 -11.96768 -11.74526 -11.59634 -11.46330 -11.00757 -10.85146 -10.62624 -10.55238 -10.29923 -10.02771 -9.84373 -9.56530 -8.95297 -8.83675 -8.68704 -8.48412 -8.21461 -6.08032 -4.13479 1.12694 1.22692 2.77225 3.24215 3.28038 3.34861 3.37742 3.70116 4.06532 4.37985 4.57527 4.76567 5.00479 5.17255 5.19805 5.22159 5.25046 5.44260 5.51349 5.55106 5.77593 5.88788 5.98717 6.24006 6.27881 6.30026 6.33028 6.46125 6.52901 6.64005 6.70205 6.73450 7.02133 7.26949 7.35532 7.46774 7.50726 7.85167 8.35126 8.45826 8.88281 9.52388 11.01408 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025170 B = 0.003910 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.170604 B = 7160.242543 C = 7801.223980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.116 3.884 11 O -0.338 6.338 12 C 0.453 3.547 13 O -0.514 6.514 14 C -0.078 4.078 15 C -0.051 4.051 16 C -0.110 4.110 17 C -0.103 4.103 18 C -0.146 4.146 19 C 0.102 3.898 20 O -0.499 6.499 21 C -0.129 4.129 22 C -0.205 4.205 23 C -0.146 4.146 24 H 0.261 0.739 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.387 0.613 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -11.030 12.858 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.043 3.957 11 O -0.253 6.253 12 C 0.295 3.705 13 O -0.404 6.404 14 C -0.116 4.116 15 C -0.052 4.052 16 C -0.128 4.128 17 C -0.121 4.121 18 C -0.165 4.165 19 C 0.057 3.943 20 O -0.309 6.309 21 C -0.147 4.147 22 C -0.242 4.242 23 C -0.184 4.184 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.242 0.758 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.345 -10.766 12.652 17.171 hybrid contribution 0.520 0.778 0.128 0.945 sum 4.865 -9.988 12.780 16.933 Atomic orbital electron populations 1.70000 1.05925 1.26722 1.49117 1.25022 0.94851 0.99093 0.94504 0.86582 0.79960 0.83243 0.78183 1.20568 1.21252 1.19721 1.20391 0.93081 0.88333 1.50976 0.91841 1.18780 0.98850 0.94189 0.84476 1.22893 0.85843 0.96965 0.89974 1.86507 1.41620 1.71053 1.26146 1.23312 0.89665 0.75014 0.82464 1.90650 1.21412 1.51524 1.76810 1.20308 0.96255 1.03727 0.91262 1.19230 0.98552 0.93029 0.94341 1.21104 0.98765 0.99827 0.93138 1.20987 0.98360 0.94686 0.98082 1.21394 1.02224 0.94204 0.98660 1.18384 0.98593 0.83711 0.93571 1.84860 1.43747 1.15831 1.86427 1.21270 0.99833 0.95402 0.98217 1.23005 0.98396 0.95702 1.07134 1.22546 0.92496 1.01273 1.02041 0.92889 0.90585 0.94380 0.86994 0.86612 0.85507 0.85475 0.85586 0.75767 0.85425 0.90055 0.91554 0.91647 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.87 12.93 55.43 0.72 -24.15 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.49 -13.30 8.77 -34.44 -0.30 -13.60 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.04 0.93 1.61 -155.67 -0.25 0.68 16 10 C 0.12 2.79 5.28 37.15 0.20 2.99 16 11 O -0.34 -7.35 10.16 -39.26 -0.40 -7.75 16 12 C 0.45 8.61 7.95 36.01 0.29 8.89 16 13 O -0.51 -11.30 15.78 -18.75 -0.30 -11.60 16 14 C -0.08 -1.04 5.94 -29.03 -0.17 -1.21 16 15 C -0.05 -0.68 4.37 -104.65 -0.46 -1.14 16 16 C -0.11 -1.37 9.70 -39.56 -0.38 -1.75 16 17 C -0.10 -1.14 10.04 -39.60 -0.40 -1.54 16 18 C -0.15 -1.62 9.99 -39.43 -0.39 -2.02 16 19 C 0.10 1.22 6.70 -39.22 -0.26 0.96 16 20 O -0.50 -5.27 13.50 -19.44 -0.26 -5.53 16 21 C -0.13 -1.65 9.64 -39.43 -0.38 -2.03 16 22 C -0.21 -4.46 9.96 -26.69 -0.27 -4.73 16 23 C -0.15 -3.40 9.43 -26.69 -0.25 -3.66 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.08 2.02 8.13 -51.93 -0.42 1.60 16 26 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 27 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 28 H 0.12 1.32 8.08 -51.93 -0.42 0.90 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.39 1.96 9.06 45.56 0.41 2.37 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -32.71 330.39 -7.61 -40.32 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.20 Total: 4.21 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -3.13 Total: -16.37 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.72 Total: -24.15 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.96 Total: -24.88 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.71 -7.61 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849718448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.740 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds