Wall clock time and date at job start Mon Mar 30 2020 01:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37698 * 120.04686 * 2 1 4 4 C 1.38997 * 120.09018 * 180.27531 * 3 2 1 5 5 O 1.35702 * 119.90386 * 179.72648 * 4 3 2 6 6 C 1.39031 * 120.18849 * 359.44517 * 4 3 2 7 7 C 1.37661 * 120.09070 * 0.27766 * 6 4 3 8 8 C 1.39769 * 120.04742 * 179.72412 * 2 1 3 9 9 C 1.47473 * 120.09371 * 359.97438 * 8 2 1 10 10 O 1.21503 * 119.99663 * 356.48045 * 9 8 2 11 11 O 1.34749 * 120.00219 * 176.48039 * 9 8 2 12 12 C 1.45197 * 116.99827 * 185.10060 * 11 9 8 13 13 C 1.53004 * 109.46637 * 184.68027 * 12 11 9 14 14 C 1.50703 * 115.54603 * 186.13375 * 13 12 11 15 15 H 1.08000 * 119.99844 * 152.64779 * 14 13 12 16 16 C 1.37877 * 120.00312 * 332.64962 * 14 13 12 17 17 N 1.31511 * 120.00231 * 161.25459 * 16 14 13 18 18 Si 1.86805 * 119.99779 * 341.25594 * 16 14 13 19 19 H 1.48494 * 109.47287 * 93.90347 * 18 16 14 20 20 H 1.48500 * 109.46822 * 213.90373 * 18 16 14 21 21 H 1.48499 * 109.46920 * 333.89869 * 18 16 14 22 22 C 1.53001 * 117.50143 * 40.46699 * 13 12 11 23 23 C 1.52993 * 117.50247 * 331.80499 * 13 12 11 24 24 H 1.08999 * 109.47080 * 261.45133 * 1 2 3 25 25 H 1.09005 * 109.47221 * 21.45322 * 1 2 3 26 26 H 1.08997 * 109.46691 * 141.44744 * 1 2 3 27 27 H 1.08000 * 119.95783 * 0.02562 * 3 2 1 28 28 H 0.96707 * 113.99822 * 269.72379 * 5 4 3 29 29 H 1.07999 * 119.95626 * 180.29668 * 6 4 3 30 30 H 1.08001 * 120.04334 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47234 * 304.68095 * 12 11 9 32 32 H 1.09000 * 109.47003 * 64.68074 * 12 11 9 33 33 H 0.97001 * 120.00494 * 180.02562 * 17 16 14 34 34 H 1.08998 * 117.49863 * 359.97438 * 22 13 12 35 35 H 1.08994 * 117.49875 * 145.01623 * 22 13 12 36 36 H 1.09004 * 117.50097 * 214.98118 * 23 13 12 37 37 H 1.09007 * 117.49882 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1919 0.0000 4 6 3.5864 1.1930 -0.0058 5 8 4.2621 2.3699 -0.0114 6 6 4.2865 -0.0082 0.0001 7 6 3.6049 -1.2042 0.0058 8 6 2.2069 -1.2098 0.0058 9 6 1.4726 -2.4888 0.0126 10 8 0.2594 -2.4924 0.0776 11 8 2.1473 -3.6534 -0.0535 12 6 1.3578 -4.8675 -0.1573 13 6 2.2840 -6.0842 -0.1031 14 6 1.6218 -7.4163 -0.3442 15 1 2.1919 -8.2361 -0.7557 16 6 0.2882 -7.5885 -0.0395 17 7 -0.3838 -8.5872 -0.5692 18 14 -0.5643 -6.4030 1.1257 19 1 -1.2233 -5.3272 0.3427 20 1 -1.5851 -7.1354 1.9174 21 1 0.4380 -5.8044 2.0435 22 6 3.4471 -6.0429 0.8900 23 6 3.7161 -5.9050 -0.6106 24 1 -0.3633 -0.1528 1.0162 25 1 -0.3634 0.9565 -0.3759 26 1 -0.3632 -0.8037 -0.6405 27 1 1.6566 2.1273 0.0004 28 1 4.4579 2.7067 -0.8965 29 1 5.3665 -0.0030 0.0004 30 1 4.1495 -2.1369 0.0108 31 1 0.6499 -4.9125 0.6703 32 1 0.8133 -4.8671 -1.1016 33 1 -1.3221 -8.7082 -0.3551 34 1 3.5528 -5.1488 1.5044 35 1 3.7337 -6.9793 1.3686 36 1 4.1796 -6.7508 -1.1185 37 1 3.9985 -4.9204 -0.9835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849747936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:28 Heat of formation + Delta-G solvation = -64.187507 kcal Electronic energy + Delta-G solvation = -21170.284411 eV Core-core repulsion = 17879.475506 eV Total energy + Delta-G solvation = -3290.808904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64992 -39.48211 -37.53290 -36.69231 -35.38603 -32.69383 -32.33368 -30.64800 -27.95649 -27.22486 -25.32183 -23.67167 -22.08288 -21.39212 -20.83259 -19.21768 -18.37368 -17.90871 -17.10011 -16.27463 -15.97407 -15.86659 -15.58673 -14.68451 -14.61424 -13.95521 -13.81682 -13.44979 -13.22745 -12.92606 -12.80067 -12.59769 -12.46756 -11.95435 -11.93630 -11.76691 -11.12603 -10.79424 -10.76659 -10.51039 -10.45810 -10.04002 -9.81967 -9.49226 -9.29164 -9.11745 -8.90272 -8.74202 -8.33755 -6.31628 -4.20239 0.48243 1.08146 2.55405 2.96332 3.23040 3.32421 3.35126 3.48900 3.83665 4.24984 4.56343 4.59901 4.66436 4.84655 4.96303 5.17417 5.34058 5.35868 5.56395 5.66319 5.67856 5.71912 5.78723 5.93343 5.96998 6.06715 6.07588 6.18085 6.33277 6.44937 6.52189 6.58379 6.71929 6.89973 6.98616 7.20202 7.27417 7.59412 8.04108 8.36737 8.76109 9.33225 10.80378 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.004947 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.770576 B = 5658.695607 C = 6456.627396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.002 4.002 3 C -0.164 4.164 4 C 0.140 3.860 5 O -0.499 6.499 6 C -0.167 4.167 7 C -0.038 4.038 8 C -0.134 4.134 9 C 0.499 3.501 10 O -0.504 6.504 11 O -0.347 6.347 12 C 0.087 3.913 13 C 0.008 3.992 14 C -0.487 4.487 15 H 0.086 0.914 16 C 0.080 3.920 17 N -0.876 5.876 18 Si 0.869 3.131 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.262 1.262 22 C -0.203 4.203 23 C -0.181 4.181 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.395 0.605 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.269 0.731 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 19.987 -0.304 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.003 4.003 3 C -0.182 4.182 4 C 0.095 3.905 5 O -0.310 6.310 6 C -0.186 4.186 7 C -0.056 4.056 8 C -0.135 4.135 9 C 0.344 3.656 10 O -0.395 6.395 11 O -0.263 6.263 12 C 0.016 3.984 13 C 0.007 3.993 14 C -0.524 4.524 15 H 0.104 0.896 16 C -0.125 4.125 17 N -0.511 5.511 18 Si 0.699 3.301 19 H -0.196 1.196 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.241 4.241 23 C -0.218 4.218 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.154 0.846 28 H 0.252 0.748 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.284 19.751 0.299 20.729 hybrid contribution -0.512 0.593 0.202 0.810 sum 5.772 20.345 0.501 21.153 Atomic orbital electron populations 1.21161 0.89519 1.03218 1.04244 1.19920 0.97072 0.90691 0.92585 1.21222 0.93323 0.98149 1.05521 1.18737 0.89860 0.85254 0.96605 1.84744 1.76489 1.36012 1.33729 1.21388 1.00966 0.91412 1.04816 1.21432 0.92700 0.98909 0.92605 1.19142 0.93681 0.90552 1.10157 1.21041 0.86086 0.84923 0.73533 1.90795 1.14892 1.88002 1.45774 1.86493 1.41924 1.15140 1.82749 1.23517 0.93775 0.79195 1.01958 1.19357 0.86956 0.92354 1.00616 1.20256 0.94970 0.93791 1.43355 0.89596 1.24985 0.96873 0.95566 0.95028 1.69951 1.09378 1.31619 1.40150 0.87243 0.79483 0.80580 0.82816 1.19649 1.21748 1.18867 1.23110 1.08406 1.00848 0.91748 1.22771 1.01590 1.00681 0.96768 0.90196 0.92024 0.88381 0.84596 0.74822 0.84553 0.83587 0.91472 0.90450 0.92080 0.91066 0.89756 0.89997 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.67 36.01 0.31 -1.25 16 2 C 0.00 -0.03 5.91 -104.25 -0.62 -0.64 16 3 C -0.16 -1.73 9.59 -39.50 -0.38 -2.11 16 4 C 0.14 1.42 6.71 -39.01 -0.26 1.16 16 5 O -0.50 -4.12 13.49 -18.81 -0.25 -4.37 16 6 C -0.17 -1.74 9.97 -39.50 -0.39 -2.13 16 7 C -0.04 -0.48 9.61 -39.20 -0.38 -0.85 16 8 C -0.13 -1.97 5.87 -104.98 -0.62 -2.59 16 9 C 0.50 9.23 7.84 34.49 0.27 9.50 16 10 O -0.50 -10.36 13.02 -19.27 -0.25 -10.61 16 11 O -0.35 -6.90 7.74 -40.63 -0.31 -7.21 16 12 C 0.09 2.02 3.94 37.16 0.15 2.17 16 13 C 0.01 0.20 2.04 -155.66 -0.32 -0.12 16 14 C -0.49 -13.53 9.58 -34.44 -0.33 -13.86 16 15 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 16 C 0.08 2.28 5.38 -17.82 -0.10 2.18 16 17 N -0.88 -26.00 13.96 55.43 0.77 -25.22 16 18 Si 0.87 21.96 24.00 -169.99 -4.08 17.88 16 19 H -0.27 -6.83 7.07 56.52 0.40 -6.43 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.26 -6.52 6.59 56.52 0.37 -6.15 16 22 C -0.20 -4.32 9.67 -26.69 -0.26 -4.58 16 23 C -0.18 -3.71 9.63 -26.70 -0.26 -3.97 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 26 H 0.10 1.44 5.94 -51.93 -0.31 1.13 16 27 H 0.14 1.15 8.04 -52.49 -0.42 0.73 16 28 H 0.39 1.25 9.06 45.56 0.41 1.67 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.15 1.75 7.61 -52.49 -0.40 1.35 16 31 H 0.07 1.66 2.55 -51.93 -0.13 1.52 16 32 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 1.42 7.86 -51.93 -0.41 1.01 16 35 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 37 H 0.08 1.46 7.47 -51.92 -0.39 1.08 16 LS Contribution 310.91 15.07 4.69 4.69 Total: -1.00 -31.82 310.91 -6.38 -38.19 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.76 Total: 3.76 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -3.17 Total: -17.10 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.77 Total: -25.22 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.82 Total: -22.19 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.08 Total: 17.88 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.82 -6.38 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849747936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.994 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds