Wall clock time and date at job start Mon Mar 30 2020 01:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37698 * 120.04686 * 2 1 4 4 C 1.38997 * 120.09018 * 180.27531 * 3 2 1 5 5 O 1.35702 * 119.90386 * 179.72648 * 4 3 2 6 6 C 1.39031 * 120.18849 * 359.44517 * 4 3 2 7 7 C 1.37661 * 120.09070 * 0.27766 * 6 4 3 8 8 C 1.39769 * 120.04742 * 179.72412 * 2 1 3 9 9 C 1.47473 * 120.09371 * 359.97438 * 8 2 1 10 10 O 1.21503 * 119.99663 * 356.48045 * 9 8 2 11 11 O 1.34749 * 120.00219 * 176.48039 * 9 8 2 12 12 C 1.45197 * 116.99827 * 185.10060 * 11 9 8 13 13 C 1.53004 * 109.46637 * 184.68027 * 12 11 9 14 14 C 1.50703 * 115.54603 * 186.13375 * 13 12 11 15 15 H 1.08000 * 119.99844 * 152.64779 * 14 13 12 16 16 C 1.37877 * 120.00312 * 332.64962 * 14 13 12 17 17 N 1.31511 * 120.00231 * 161.25459 * 16 14 13 18 18 Si 1.86805 * 119.99779 * 341.25594 * 16 14 13 19 19 H 1.48494 * 109.47287 * 93.90347 * 18 16 14 20 20 H 1.48500 * 109.46822 * 213.90373 * 18 16 14 21 21 H 1.48499 * 109.46920 * 333.89869 * 18 16 14 22 22 C 1.53001 * 117.50143 * 40.46699 * 13 12 11 23 23 C 1.52993 * 117.50247 * 331.80499 * 13 12 11 24 24 H 1.08999 * 109.47080 * 261.45133 * 1 2 3 25 25 H 1.09005 * 109.47221 * 21.45322 * 1 2 3 26 26 H 1.08997 * 109.46691 * 141.44744 * 1 2 3 27 27 H 1.08000 * 119.95783 * 0.02562 * 3 2 1 28 28 H 0.96707 * 113.99822 * 269.72379 * 5 4 3 29 29 H 1.07999 * 119.95626 * 180.29668 * 6 4 3 30 30 H 1.08001 * 120.04334 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47234 * 304.68095 * 12 11 9 32 32 H 1.09000 * 109.47003 * 64.68074 * 12 11 9 33 33 H 0.97001 * 120.00494 * 180.02562 * 17 16 14 34 34 H 1.08998 * 117.49863 * 359.97438 * 22 13 12 35 35 H 1.08994 * 117.49875 * 145.01623 * 22 13 12 36 36 H 1.09004 * 117.50097 * 214.98118 * 23 13 12 37 37 H 1.09007 * 117.49882 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1919 0.0000 4 6 3.5864 1.1930 -0.0058 5 8 4.2621 2.3699 -0.0114 6 6 4.2865 -0.0082 0.0001 7 6 3.6049 -1.2042 0.0058 8 6 2.2069 -1.2098 0.0058 9 6 1.4726 -2.4888 0.0126 10 8 0.2594 -2.4924 0.0776 11 8 2.1473 -3.6534 -0.0535 12 6 1.3578 -4.8675 -0.1573 13 6 2.2840 -6.0842 -0.1031 14 6 1.6218 -7.4163 -0.3442 15 1 2.1919 -8.2361 -0.7557 16 6 0.2882 -7.5885 -0.0395 17 7 -0.3838 -8.5872 -0.5692 18 14 -0.5643 -6.4030 1.1257 19 1 -1.2233 -5.3272 0.3427 20 1 -1.5851 -7.1354 1.9174 21 1 0.4380 -5.8044 2.0435 22 6 3.4471 -6.0429 0.8900 23 6 3.7161 -5.9050 -0.6106 24 1 -0.3633 -0.1528 1.0162 25 1 -0.3634 0.9565 -0.3759 26 1 -0.3632 -0.8037 -0.6405 27 1 1.6566 2.1273 0.0004 28 1 4.4579 2.7067 -0.8965 29 1 5.3665 -0.0030 0.0004 30 1 4.1495 -2.1369 0.0108 31 1 0.6499 -4.9125 0.6703 32 1 0.8133 -4.8671 -1.1016 33 1 -1.3221 -8.7082 -0.3551 34 1 3.5528 -5.1488 1.5044 35 1 3.7337 -6.9793 1.3686 36 1 4.1796 -6.7508 -1.1185 37 1 3.9985 -4.9204 -0.9835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849747936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:27 Heat of formation + Delta-G solvation = -84.945307 kcal Electronic energy + Delta-G solvation = -21171.184537 eV Core-core repulsion = 17879.475506 eV Total energy + Delta-G solvation = -3291.709030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90842 -40.55320 -38.98696 -37.73529 -36.97492 -34.47280 -33.60312 -31.63392 -29.60848 -28.33856 -27.21292 -24.75642 -23.12575 -23.05367 -21.99558 -21.15293 -19.31262 -19.04202 -18.85827 -17.78016 -17.63998 -16.97852 -16.44424 -16.32636 -15.94825 -15.38811 -15.24458 -14.83379 -14.56575 -14.25259 -14.18808 -13.75812 -13.63520 -13.52660 -13.05385 -12.85251 -12.76848 -12.69601 -12.44872 -12.10867 -11.83515 -11.57527 -11.49753 -11.24055 -11.16655 -10.66516 -10.32754 -9.97678 -9.79367 -8.50509 -6.40058 -0.49834 0.23225 1.19401 1.24884 1.28538 1.33928 1.56082 2.14632 2.53352 2.67693 3.11233 3.36807 3.52886 3.71687 3.77818 3.89125 3.98136 4.12167 4.15078 4.28641 4.43166 4.54250 4.63731 4.70265 4.74913 4.87294 4.93250 4.96343 5.09038 5.10772 5.20535 5.25370 5.29659 5.51744 5.53750 5.56882 5.66232 6.17781 6.55538 6.60502 6.79245 7.14875 8.66027 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.004947 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.770576 B = 5658.695607 C = 6456.627396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.009 4.009 3 C -0.161 4.161 4 C 0.159 3.841 5 O -0.501 6.501 6 C -0.163 4.163 7 C -0.039 4.039 8 C -0.163 4.163 9 C 0.494 3.506 10 O -0.534 6.534 11 O -0.341 6.341 12 C 0.098 3.902 13 C -0.031 4.031 14 C -0.491 4.491 15 H 0.055 0.945 16 C 0.037 3.963 17 N -0.920 5.920 18 Si 0.924 3.076 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.255 1.255 22 C -0.186 4.186 23 C -0.156 4.156 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.161 0.839 28 H 0.420 0.580 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.272 0.728 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 23.492 0.256 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.009 4.009 3 C -0.179 4.179 4 C 0.114 3.886 5 O -0.316 6.316 6 C -0.182 4.182 7 C -0.057 4.057 8 C -0.164 4.164 9 C 0.341 3.659 10 O -0.426 6.426 11 O -0.258 6.258 12 C 0.025 3.975 13 C -0.032 4.032 14 C -0.528 4.528 15 H 0.073 0.927 16 C -0.164 4.164 17 N -0.558 5.558 18 Si 0.753 3.247 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.181 1.181 22 C -0.223 4.223 23 C -0.193 4.193 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.178 0.822 28 H 0.282 0.718 29 H 0.180 0.820 30 H 0.167 0.833 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.411 23.285 0.848 24.772 hybrid contribution -1.012 -0.334 -0.038 1.066 sum 7.400 22.951 0.809 24.128 Atomic orbital electron populations 1.21097 0.89808 1.03790 1.03261 1.20018 0.97116 0.90943 0.92866 1.21432 0.93808 0.98041 1.04650 1.18794 0.89734 0.85892 0.94211 1.84690 1.76002 1.34961 1.35969 1.21630 1.02215 0.90608 1.03702 1.21496 0.91656 1.00086 0.92473 1.19071 0.94616 0.88889 1.13829 1.21844 0.86174 0.85394 0.72449 1.90788 1.16228 1.88226 1.47334 1.86473 1.41257 1.14791 1.83244 1.23024 0.93434 0.80630 1.00408 1.19260 0.88447 0.90970 1.04524 1.20432 0.94999 0.95012 1.42373 0.92684 1.25567 0.97650 0.96932 0.96254 1.70037 1.09951 1.33726 1.42075 0.86346 0.78648 0.78565 0.81156 1.20298 1.21281 1.18117 1.23089 1.05206 1.01710 0.92338 1.22835 0.97972 1.02141 0.96373 0.91020 0.88970 0.91196 0.82164 0.71785 0.81988 0.83340 0.93100 0.92093 0.91828 0.89153 0.89806 0.89821 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 8.67 71.24 0.62 -2.35 16 2 C -0.01 -0.21 5.91 -19.62 -0.12 -0.33 16 3 C -0.16 -2.83 9.59 22.32 0.21 -2.61 16 4 C 0.16 2.52 6.71 22.64 0.15 2.67 16 5 O -0.50 -5.75 13.49 -90.22 -1.22 -6.96 16 6 C -0.16 -2.73 9.97 22.32 0.22 -2.51 16 7 C -0.04 -0.87 9.61 22.51 0.22 -0.65 16 8 C -0.16 -4.58 5.87 -20.09 -0.12 -4.69 16 9 C 0.49 18.21 7.84 70.26 0.55 18.76 16 10 O -0.53 -22.41 13.02 19.83 0.26 -22.15 16 11 O -0.34 -13.34 7.74 -56.60 -0.44 -13.77 16 12 C 0.10 4.54 3.94 71.98 0.28 4.83 16 13 C -0.03 -1.48 2.04 -52.93 -0.11 -1.59 16 14 C -0.49 -27.98 9.58 25.60 0.25 -27.73 16 15 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 16 C 0.04 2.14 5.38 84.66 0.46 2.60 16 17 N -0.92 -56.54 13.96 21.45 0.30 -56.24 16 18 Si 0.92 46.76 24.00 68.60 1.65 48.41 16 19 H -0.28 -14.11 7.07 99.48 0.70 -13.41 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.26 -12.47 6.59 99.48 0.66 -11.81 16 22 C -0.19 -7.55 9.67 30.62 0.30 -7.26 16 23 C -0.16 -6.13 9.63 30.62 0.29 -5.83 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.09 1.57 8.02 -2.38 -0.02 1.55 16 26 H 0.07 2.10 5.94 -2.39 -0.01 2.08 16 27 H 0.16 2.00 8.04 -2.91 -0.02 1.97 16 28 H 0.42 0.46 9.06 -74.05 -0.67 -0.21 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.15 3.16 7.61 -2.91 -0.02 3.13 16 31 H 0.05 2.53 2.55 -2.39 -0.01 2.52 16 32 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.09 3.34 7.86 -2.39 -0.02 3.32 16 35 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.10 3.57 7.47 -2.38 -0.02 3.56 16 Total: -1.00 -70.76 310.91 4.13 -66.63 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.38 Total: 10.79 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 3.21 Total: -26.69 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.30 Total: -56.24 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.40 Total: -42.89 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.65 Total: 48.41 kcal Total: -70.76 4.13 -66.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849747936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.316 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds