Wall clock time and date at job start Mon Mar 30 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37996 * 120.01794 * 2 1 4 4 C 1.38250 * 120.21277 * 179.97438 * 3 2 1 5 5 C 1.38862 * 120.24869 * 359.97220 * 4 3 2 6 6 O 1.35916 * 119.98332 * 180.02562 * 5 4 3 7 7 C 1.38434 * 120.03836 * 0.02562 * 5 4 3 8 8 C 1.39585 * 119.78537 * 359.78528 * 7 5 4 9 9 C 1.47737 * 120.12486 * 180.25520 * 8 7 5 10 10 O 1.21476 * 120.00257 * 185.50110 * 9 8 7 11 11 O 1.34714 * 120.00105 * 5.49743 * 9 8 7 12 12 C 1.45199 * 117.00288 * 185.12609 * 11 9 8 13 13 C 1.52993 * 109.46896 * 175.14138 * 12 11 9 14 14 C 1.50711 * 115.54811 * 186.74248 * 13 12 11 15 15 H 1.08000 * 120.00013 * 148.06413 * 14 13 12 16 16 C 1.37877 * 119.99878 * 328.06013 * 14 13 12 17 17 N 1.31508 * 119.99848 * 165.02245 * 16 14 13 18 18 Si 1.86799 * 119.99989 * 345.02895 * 16 14 13 19 19 H 1.48499 * 109.47238 * 95.32525 * 18 16 14 20 20 H 1.48500 * 109.47074 * 215.32366 * 18 16 14 21 21 H 1.48496 * 109.47092 * 335.32450 * 18 16 14 22 22 C 1.52998 * 117.50411 * 41.07720 * 13 12 11 23 23 C 1.53000 * 117.50240 * 332.41172 * 13 12 11 24 24 H 1.08999 * 109.47020 * 97.71856 * 1 2 3 25 25 H 1.08995 * 109.47212 * 337.72280 * 1 2 3 26 26 H 1.08998 * 109.47344 * 217.71574 * 1 2 3 27 27 H 1.08003 * 119.89660 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.87774 * 180.02562 * 4 3 2 29 29 H 0.96698 * 113.99176 * 90.00347 * 6 5 4 30 30 H 1.07996 * 120.10986 * 179.97438 * 7 5 4 31 31 H 1.08996 * 109.46821 * 295.14170 * 12 11 9 32 32 H 1.08999 * 109.47131 * 55.13912 * 12 11 9 33 33 H 0.97002 * 120.00231 * 180.02562 * 17 16 14 34 34 H 1.09001 * 117.49459 * 359.97438 * 22 13 12 35 35 H 1.08993 * 117.50279 * 145.01527 * 22 13 12 36 36 H 1.09005 * 117.49680 * 214.97810 * 23 13 12 37 37 H 1.08993 * 117.49995 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1949 0.0000 4 6 3.5798 1.1996 0.0005 5 6 4.2834 0.0024 0.0017 6 8 5.6426 0.0133 0.0027 7 6 3.6014 -1.2023 0.0017 8 6 2.2055 -1.2088 0.0052 9 6 1.4701 -2.4900 0.0109 10 8 0.2593 -2.4958 -0.0869 11 8 2.1421 -3.6520 0.1246 12 6 1.3685 -4.8752 0.0082 13 6 2.3110 -6.0798 0.0416 14 6 1.6680 -7.4159 -0.2284 15 1 2.2295 -8.1955 -0.7217 16 6 0.3631 -7.6428 0.1545 17 7 -0.2938 -8.6749 -0.3282 18 14 -0.4719 -6.4843 1.3586 19 1 -1.2497 -5.4663 0.6078 20 1 -1.3866 -7.2578 2.2363 21 1 0.5567 -5.8080 2.1891 22 6 3.4702 -6.0426 1.0395 23 6 3.7423 -5.8711 -0.4571 24 1 -0.3633 -0.1380 -1.0183 25 1 -0.3633 0.9509 0.3896 26 1 -0.3634 -0.8129 0.6286 27 1 1.6559 2.1294 -0.0004 28 1 4.1147 2.1379 0.0010 29 1 6.0350 0.0168 0.8864 30 1 4.1474 -2.1340 0.0022 31 1 0.6655 -4.9408 0.8386 32 1 0.8192 -4.8695 -0.9332 33 1 -1.2120 -8.8344 -0.0591 34 1 3.5615 -5.1596 1.6720 35 1 3.7680 -6.9843 1.5004 36 1 4.2190 -6.7002 -0.9801 37 1 4.0124 -4.8756 -0.8094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849778147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:30 Heat of formation + Delta-G solvation = -63.786473 kcal Electronic energy + Delta-G solvation = -21256.695959 eV Core-core repulsion = 17965.904444 eV Total energy + Delta-G solvation = -3290.791514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65665 -39.41461 -37.53297 -36.71394 -35.37078 -32.32003 -31.87627 -31.66151 -27.92090 -26.71087 -25.38171 -23.96313 -22.03240 -21.40133 -20.87040 -19.21136 -18.65058 -17.40349 -16.88569 -16.22733 -16.00353 -15.73645 -15.70705 -14.91908 -14.70545 -13.95491 -13.87909 -13.75035 -13.19558 -12.93534 -12.65150 -12.59917 -12.17377 -11.94145 -11.83043 -11.64109 -11.17396 -10.98469 -10.79708 -10.47566 -10.45740 -10.06532 -9.76128 -9.51422 -9.32623 -9.27014 -8.75803 -8.70375 -8.35279 -6.29660 -4.21506 0.54012 0.99950 2.56592 2.93382 3.21528 3.29199 3.32866 3.47521 3.93402 4.24662 4.52818 4.67549 4.70179 4.73203 4.99819 5.13168 5.33601 5.37036 5.56069 5.64643 5.67210 5.72033 5.79636 5.89883 5.94988 6.07639 6.09127 6.17556 6.32863 6.46001 6.51019 6.58634 6.71088 6.90837 6.98178 7.20133 7.39233 7.58909 8.02028 8.37182 8.76556 9.33682 10.82453 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.005396 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.102158 B = 5187.467653 C = 6133.953516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.028 4.028 3 C -0.120 4.120 4 C -0.110 4.110 5 C 0.083 3.917 6 O -0.495 6.495 7 C -0.082 4.082 8 C -0.107 4.107 9 C 0.498 3.502 10 O -0.501 6.501 11 O -0.346 6.346 12 C 0.087 3.913 13 C 0.005 3.995 14 C -0.484 4.484 15 H 0.086 0.914 16 C 0.079 3.921 17 N -0.880 5.880 18 Si 0.869 3.131 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.259 1.259 22 C -0.201 4.201 23 C -0.179 4.179 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.390 0.610 30 H 0.147 0.853 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.269 0.731 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 20.195 2.977 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.029 4.029 3 C -0.138 4.138 4 C -0.129 4.129 5 C 0.039 3.961 6 O -0.305 6.305 7 C -0.100 4.100 8 C -0.108 4.108 9 C 0.343 3.657 10 O -0.391 6.391 11 O -0.262 6.262 12 C 0.015 3.985 13 C 0.004 3.996 14 C -0.521 4.521 15 H 0.104 0.896 16 C -0.125 4.125 17 N -0.515 5.515 18 Si 0.699 3.301 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.185 1.185 22 C -0.239 4.239 23 C -0.217 4.217 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.246 0.754 30 H 0.165 0.835 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.003 19.998 2.333 21.009 hybrid contribution -0.454 0.470 1.121 1.298 sum 5.549 20.468 3.454 21.486 Atomic orbital electron populations 1.21137 0.89652 1.03178 1.04104 1.20108 0.97208 0.91174 0.94375 1.20880 0.93461 0.97492 1.02007 1.21644 0.94497 0.98072 0.98671 1.18294 0.83255 0.91864 1.02725 1.84865 1.15588 1.96394 1.33639 1.21822 0.93186 0.99137 0.95888 1.18963 0.92966 0.90704 1.08161 1.21084 0.86034 0.84944 0.73631 1.90790 1.14867 1.87940 1.45546 1.86496 1.43053 1.14869 1.81827 1.23586 0.94057 0.78816 1.02040 1.19375 0.86921 0.92494 1.00768 1.20284 0.97489 0.94883 1.39447 0.89588 1.24987 0.96738 0.95451 0.95337 1.69915 1.10981 1.29475 1.41153 0.87219 0.79618 0.80436 0.82794 1.19798 1.21669 1.18545 1.23110 1.08187 1.00873 0.91686 1.22754 1.01317 1.00630 0.96962 0.90249 0.92048 0.88644 0.84674 0.84869 0.75383 0.83489 0.91527 0.90425 0.92097 0.91052 0.89704 0.89946 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.70 36.01 0.31 -1.21 16 2 C -0.03 -0.36 5.92 -104.20 -0.62 -0.97 16 3 C -0.12 -1.18 9.65 -39.67 -0.38 -1.56 16 4 C -0.11 -1.04 9.98 -39.35 -0.39 -1.43 16 5 C 0.08 0.92 6.70 -39.28 -0.26 0.65 16 6 O -0.49 -4.78 13.50 -19.48 -0.26 -5.04 16 7 C -0.08 -1.08 9.55 -39.01 -0.37 -1.45 16 8 C -0.11 -1.58 5.87 -105.00 -0.62 -2.20 16 9 C 0.50 9.25 7.83 34.61 0.27 9.53 16 10 O -0.50 -10.25 13.11 -19.25 -0.25 -10.50 16 11 O -0.35 -6.96 7.76 -40.53 -0.31 -7.28 16 12 C 0.09 2.01 3.99 37.15 0.15 2.16 16 13 C 0.01 0.13 1.94 -155.66 -0.30 -0.17 16 14 C -0.48 -13.49 9.58 -34.43 -0.33 -13.82 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 16 C 0.08 2.25 5.41 -17.82 -0.10 2.16 16 17 N -0.88 -26.21 13.96 55.43 0.77 -25.44 16 18 Si 0.87 21.80 24.13 -169.99 -4.10 17.70 16 19 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.26 -6.31 6.42 56.52 0.36 -5.95 16 22 C -0.20 -4.28 9.67 -26.69 -0.26 -4.54 16 23 C -0.18 -3.74 9.62 -26.69 -0.26 -3.99 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 26 H 0.10 1.40 5.89 -51.93 -0.31 1.09 16 27 H 0.14 0.94 8.05 -52.48 -0.42 0.52 16 28 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.39 1.87 9.06 45.56 0.41 2.28 16 30 H 0.15 1.96 7.62 -52.49 -0.40 1.56 16 31 H 0.07 1.63 2.67 -51.93 -0.14 1.49 16 32 H 0.08 1.85 8.10 -51.93 -0.42 1.43 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.07 1.42 7.88 -51.93 -0.41 1.01 16 35 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 37 H 0.08 1.50 7.45 -51.93 -0.39 1.11 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -31.83 311.10 -6.40 -38.23 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -3.77 Total: 4.49 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -3.15 Total: -16.85 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.77 Total: -25.44 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.83 Total: -22.82 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.10 Total: 17.70 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.83 -6.40 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849778147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.556 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds