Wall clock time and date at job start Mon Mar 30 2020 01:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37996 * 120.01794 * 2 1 4 4 C 1.38250 * 120.21277 * 179.97438 * 3 2 1 5 5 C 1.38862 * 120.24869 * 359.97220 * 4 3 2 6 6 O 1.35916 * 119.98332 * 180.02562 * 5 4 3 7 7 C 1.38434 * 120.03836 * 0.02562 * 5 4 3 8 8 C 1.39585 * 119.78537 * 359.78528 * 7 5 4 9 9 C 1.47737 * 120.12486 * 180.25520 * 8 7 5 10 10 O 1.21476 * 120.00257 * 185.50110 * 9 8 7 11 11 O 1.34714 * 120.00105 * 5.49743 * 9 8 7 12 12 C 1.45199 * 117.00288 * 185.12609 * 11 9 8 13 13 C 1.52993 * 109.46896 * 175.14138 * 12 11 9 14 14 C 1.50711 * 115.54811 * 186.74248 * 13 12 11 15 15 H 1.08000 * 120.00013 * 148.06413 * 14 13 12 16 16 C 1.37877 * 119.99878 * 328.06013 * 14 13 12 17 17 N 1.31508 * 119.99848 * 165.02245 * 16 14 13 18 18 Si 1.86799 * 119.99989 * 345.02895 * 16 14 13 19 19 H 1.48499 * 109.47238 * 95.32525 * 18 16 14 20 20 H 1.48500 * 109.47074 * 215.32366 * 18 16 14 21 21 H 1.48496 * 109.47092 * 335.32450 * 18 16 14 22 22 C 1.52998 * 117.50411 * 41.07720 * 13 12 11 23 23 C 1.53000 * 117.50240 * 332.41172 * 13 12 11 24 24 H 1.08999 * 109.47020 * 97.71856 * 1 2 3 25 25 H 1.08995 * 109.47212 * 337.72280 * 1 2 3 26 26 H 1.08998 * 109.47344 * 217.71574 * 1 2 3 27 27 H 1.08003 * 119.89660 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.87774 * 180.02562 * 4 3 2 29 29 H 0.96698 * 113.99176 * 90.00347 * 6 5 4 30 30 H 1.07996 * 120.10986 * 179.97438 * 7 5 4 31 31 H 1.08996 * 109.46821 * 295.14170 * 12 11 9 32 32 H 1.08999 * 109.47131 * 55.13912 * 12 11 9 33 33 H 0.97002 * 120.00231 * 180.02562 * 17 16 14 34 34 H 1.09001 * 117.49459 * 359.97438 * 22 13 12 35 35 H 1.08993 * 117.50279 * 145.01527 * 22 13 12 36 36 H 1.09005 * 117.49680 * 214.97810 * 23 13 12 37 37 H 1.08993 * 117.49995 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1949 0.0000 4 6 3.5798 1.1996 0.0005 5 6 4.2834 0.0024 0.0017 6 8 5.6426 0.0133 0.0027 7 6 3.6014 -1.2023 0.0017 8 6 2.2055 -1.2088 0.0052 9 6 1.4701 -2.4900 0.0109 10 8 0.2593 -2.4958 -0.0869 11 8 2.1421 -3.6520 0.1246 12 6 1.3685 -4.8752 0.0082 13 6 2.3110 -6.0798 0.0416 14 6 1.6680 -7.4159 -0.2284 15 1 2.2295 -8.1955 -0.7217 16 6 0.3631 -7.6428 0.1545 17 7 -0.2938 -8.6749 -0.3282 18 14 -0.4719 -6.4843 1.3586 19 1 -1.2497 -5.4663 0.6078 20 1 -1.3866 -7.2578 2.2363 21 1 0.5567 -5.8080 2.1891 22 6 3.4702 -6.0426 1.0395 23 6 3.7423 -5.8711 -0.4571 24 1 -0.3633 -0.1380 -1.0183 25 1 -0.3633 0.9509 0.3896 26 1 -0.3634 -0.8129 0.6286 27 1 1.6559 2.1294 -0.0004 28 1 4.1147 2.1379 0.0010 29 1 6.0350 0.0168 0.8864 30 1 4.1474 -2.1340 0.0022 31 1 0.6655 -4.9408 0.8386 32 1 0.8192 -4.8695 -0.9332 33 1 -1.2120 -8.8344 -0.0591 34 1 3.5615 -5.1596 1.6720 35 1 3.7680 -6.9843 1.5004 36 1 4.2190 -6.7002 -0.9801 37 1 4.0124 -4.8756 -0.8094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849778147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:29 Heat of formation + Delta-G solvation = -84.726010 kcal Electronic energy + Delta-G solvation = -21257.603965 eV Core-core repulsion = 17965.904444 eV Total energy + Delta-G solvation = -3291.699521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93625 -40.51073 -39.00899 -37.78676 -36.96879 -34.46821 -32.79087 -32.59388 -29.68083 -27.87341 -27.13282 -25.10050 -23.13005 -23.04576 -21.99809 -21.15650 -19.73292 -18.89411 -18.53177 -17.81891 -17.21055 -16.86805 -16.65624 -16.51787 -16.01010 -15.51063 -15.31518 -14.84725 -14.63551 -14.45691 -14.25524 -13.64673 -13.60221 -13.14090 -13.05720 -12.82598 -12.76223 -12.56526 -12.41081 -12.13113 -11.92453 -11.78155 -11.50168 -11.22308 -11.13219 -10.69057 -10.34335 -10.18130 -9.58122 -8.49241 -6.43019 -0.45979 0.16002 1.19215 1.22786 1.27716 1.34742 1.53205 2.14980 2.53297 2.68729 3.13140 3.33589 3.52075 3.76498 3.85934 3.87880 3.95703 4.07056 4.10502 4.28532 4.40145 4.54931 4.68781 4.71345 4.73713 4.85675 4.89996 4.94847 5.00583 5.14720 5.21759 5.25718 5.29571 5.50723 5.51578 5.55232 5.70346 6.16504 6.53886 6.57044 6.83341 7.14165 8.67232 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.005396 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.102158 B = 5187.467653 C = 6133.953516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.039 4.039 3 C -0.108 4.108 4 C -0.094 4.094 5 C 0.088 3.912 6 O -0.502 6.502 7 C -0.095 4.095 8 C -0.132 4.132 9 C 0.492 3.508 10 O -0.528 6.528 11 O -0.343 6.343 12 C 0.098 3.902 13 C -0.032 4.032 14 C -0.489 4.489 15 H 0.053 0.947 16 C 0.034 3.966 17 N -0.925 5.925 18 Si 0.925 3.075 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.247 1.247 22 C -0.181 4.181 23 C -0.158 4.158 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.413 0.587 30 H 0.139 0.861 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.272 0.728 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.332 24.159 3.948 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.039 4.039 3 C -0.125 4.125 4 C -0.112 4.112 5 C 0.044 3.956 6 O -0.316 6.316 7 C -0.114 4.114 8 C -0.133 4.133 9 C 0.339 3.661 10 O -0.420 6.420 11 O -0.259 6.259 12 C 0.025 3.975 13 C -0.033 4.033 14 C -0.526 4.526 15 H 0.071 0.929 16 C -0.167 4.167 17 N -0.563 5.563 18 Si 0.753 3.247 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.172 1.172 22 C -0.219 4.219 23 C -0.195 4.195 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.190 0.810 28 H 0.187 0.813 29 H 0.272 0.728 30 H 0.156 0.844 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.748 23.977 3.328 25.417 hybrid contribution -0.835 -0.650 0.760 1.302 sum 6.914 23.327 4.087 24.671 Atomic orbital electron populations 1.21077 0.89841 1.03803 1.03143 1.20295 0.97335 0.91471 0.94805 1.21257 0.93794 0.97538 0.99917 1.22041 0.94419 0.98768 0.96016 1.18350 0.83886 0.91603 1.01790 1.84816 1.14758 1.96270 1.35734 1.21807 0.92508 1.00049 0.96997 1.18869 0.93618 0.89227 1.11565 1.21912 0.86155 0.85423 0.72580 1.90783 1.16095 1.88170 1.46958 1.86480 1.42522 1.14592 1.82351 1.23091 0.93674 0.80245 1.00505 1.19271 0.88340 0.91147 1.04539 1.20437 0.97521 0.96131 1.38541 0.92874 1.25617 0.97478 0.96814 0.96761 1.70012 1.11637 1.31576 1.43037 0.86314 0.78882 0.78501 0.80991 1.20472 1.21010 1.17228 1.23092 1.04894 1.01790 0.92104 1.22803 0.98080 1.01840 0.96820 0.91083 0.88655 0.91672 0.81024 0.81342 0.72771 0.84356 0.92796 0.92321 0.91841 0.89058 0.89627 0.89798 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 8.70 71.24 0.62 -2.21 16 2 C -0.04 -0.89 5.92 -19.59 -0.12 -1.01 16 3 C -0.11 -1.61 9.65 22.22 0.21 -1.40 16 4 C -0.09 -1.31 9.98 22.42 0.22 -1.08 16 5 C 0.09 1.64 6.70 22.47 0.15 1.79 16 6 O -0.50 -7.80 13.50 -92.61 -1.25 -9.05 16 7 C -0.09 -2.33 9.55 22.64 0.22 -2.11 16 8 C -0.13 -3.77 5.87 -20.11 -0.12 -3.89 16 9 C 0.49 18.41 7.83 70.33 0.55 18.96 16 10 O -0.53 -22.17 13.11 19.91 0.26 -21.91 16 11 O -0.34 -13.74 7.76 -56.23 -0.44 -14.18 16 12 C 0.10 4.58 3.99 71.98 0.29 4.87 16 13 C -0.03 -1.54 1.94 -52.93 -0.10 -1.65 16 14 C -0.49 -28.10 9.58 25.60 0.25 -27.85 16 15 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 16 C 0.03 1.97 5.41 84.66 0.46 2.43 16 17 N -0.92 -57.15 13.96 21.45 0.30 -56.85 16 18 Si 0.92 46.28 24.13 68.60 1.66 47.94 16 19 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 20 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.25 -11.72 6.42 99.48 0.64 -11.08 16 22 C -0.18 -7.45 9.67 30.62 0.30 -7.15 16 23 C -0.16 -6.41 9.62 30.62 0.29 -6.12 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16 26 H 0.06 1.92 5.89 -2.39 -0.01 1.91 16 27 H 0.17 1.34 8.05 -2.91 -0.02 1.32 16 28 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.41 2.32 9.06 -74.06 -0.67 1.65 16 30 H 0.14 3.52 7.62 -2.91 -0.02 3.50 16 31 H 0.05 2.66 2.67 -2.39 -0.01 2.65 16 32 H 0.06 2.90 8.10 -2.39 -0.02 2.89 16 33 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 34 H 0.09 3.40 7.88 -2.39 -0.02 3.38 16 35 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 37 H 0.10 3.62 7.45 -2.39 -0.02 3.60 16 Total: -1.00 -71.73 311.10 4.11 -67.62 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.36 Total: 12.85 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 3.22 Total: -26.42 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.30 Total: -56.85 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -1.43 Total: -45.14 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.66 Total: 47.94 kcal Total: -71.73 4.11 -67.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849778147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.109 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds