Wall clock time and date at job start Mon Mar 30 2020 02:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.65749 * 2 1 4 4 C 1.54707 * 110.73836 * 236.80654 * 2 1 3 5 5 C 1.51682 * 101.87814 * 216.23955 * 4 2 1 6 6 C 1.37280 * 132.06574 * 195.74766 * 5 4 2 7 7 C 1.39872 * 119.85042 * 179.57805 * 6 5 4 8 8 C 1.47469 * 120.27192 * 179.97438 * 7 6 5 9 9 O 1.21506 * 119.99820 * 0.02562 * 8 7 6 10 10 O 1.34748 * 120.00185 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00040 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47150 * 179.97438 * 11 10 8 13 13 C 1.50694 * 109.47407 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00300 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00170 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00340 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46814 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47481 * 119.99777 * 17 15 13 20 20 H 1.48494 * 109.47025 * 240.00290 * 17 15 13 21 21 C 1.39810 * 119.45796 * 0.02562 * 7 6 5 22 22 C 1.37452 * 120.19852 * 0.17542 * 21 7 6 23 23 C 1.39201 * 106.98223 * 15.72197 * 5 4 2 24 24 O 1.35973 * 111.19344 * 0.61814 * 23 5 4 25 25 H 1.08993 * 109.47090 * 183.19797 * 1 2 3 26 26 H 1.08997 * 109.46906 * 303.19336 * 1 2 3 27 27 H 1.08999 * 109.47403 * 63.19248 * 1 2 3 28 28 H 1.08997 * 110.94712 * 334.38920 * 4 2 1 29 29 H 1.08997 * 110.94879 * 98.09710 * 4 2 1 30 30 H 1.07990 * 120.07565 * 359.62513 * 6 5 4 31 31 H 1.09003 * 109.47033 * 299.99417 * 11 10 8 32 32 H 1.09005 * 109.47106 * 59.99665 * 11 10 8 33 33 H 1.08997 * 109.47274 * 300.00288 * 12 11 10 34 34 H 1.09008 * 109.46978 * 59.99564 * 12 11 10 35 35 H 0.96998 * 120.00498 * 180.02562 * 16 15 13 36 36 H 1.07996 * 119.90639 * 180.19782 * 21 7 6 37 37 H 1.07990 * 119.78193 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0778 -0.7921 -1.2107 5 6 3.3080 -1.4542 -0.6199 6 6 4.3945 -2.0604 -1.2002 7 6 5.4086 -2.5898 -0.3953 8 6 6.5795 -3.2434 -1.0088 9 8 6.6664 -3.3234 -2.2181 10 8 7.5531 -3.7520 -0.2282 11 6 8.6756 -4.3816 -0.9005 12 6 9.6716 -4.8945 0.1414 13 6 10.8363 -5.5485 -0.5562 14 1 10.8636 -5.5934 -1.6350 15 6 11.8670 -6.0895 0.1825 16 7 11.8341 -6.0344 1.4961 17 14 13.3112 -6.8995 -0.6823 18 1 13.1098 -6.8309 -2.1520 19 1 14.5653 -6.1916 -0.3205 20 1 13.4059 -8.3206 -0.2621 21 6 5.3025 -2.4951 0.9955 22 6 4.2082 -1.8896 1.5658 23 6 3.1932 -1.3636 0.7644 24 8 2.0391 -0.7399 1.1222 25 1 -0.3633 -1.0260 0.0573 26 1 -0.3633 0.5626 0.8600 27 1 -0.3634 0.4635 -0.9172 28 1 1.3573 -1.5378 -1.5468 29 1 2.3499 -0.1205 -2.0250 30 1 4.4664 -2.1277 -2.2756 31 1 8.3168 -5.2165 -1.5025 32 1 9.1676 -3.6536 -1.5455 33 1 10.0303 -4.0595 0.7431 34 1 9.1798 -5.6225 0.7868 35 1 12.5594 -6.4147 2.0159 36 1 6.0828 -2.8985 1.6237 37 1 4.1334 -1.8198 2.6409 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850063402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:25 Heat of formation + Delta-G solvation = -107.032385 kcal Electronic energy + Delta-G solvation = -20037.344161 eV Core-core repulsion = 16744.677363 eV Total energy + Delta-G solvation = -3292.666798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49320 -39.87309 -37.53992 -35.97801 -33.55872 -33.33839 -31.58808 -30.67898 -30.03784 -27.06921 -25.27158 -23.80308 -22.12729 -22.06251 -21.10889 -20.42081 -17.92813 -17.63392 -16.81546 -16.53394 -15.99869 -15.87796 -15.54219 -14.55932 -14.43549 -14.20226 -13.87033 -13.48807 -13.35410 -13.19076 -13.01523 -12.70927 -12.42170 -12.37037 -12.34086 -11.65403 -11.27926 -11.12530 -11.03006 -10.92237 -10.75519 -10.68773 -10.26695 -9.63876 -9.62809 -9.28165 -9.16374 -8.45101 -8.41488 -6.10233 -4.14368 0.65885 1.12119 2.64258 2.87018 3.14982 3.27966 3.35580 3.40872 3.66227 4.06640 4.14640 4.39794 4.49082 4.59316 4.73771 4.87329 4.99369 5.09736 5.16921 5.22444 5.26527 5.31754 5.44250 5.50842 5.62931 5.80146 5.96694 6.06867 6.10803 6.13616 6.22732 6.31066 6.64567 6.86276 6.97259 7.56527 7.62911 7.87233 8.19051 8.26919 8.91419 9.50078 11.01353 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.055495 B = 0.002777 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.427229 B =10080.433715 C =10534.495318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 H 0.090 0.910 4 C -0.103 4.103 5 C -0.194 4.194 6 C -0.007 4.007 7 C -0.149 4.149 8 C 0.505 3.495 9 O -0.518 6.518 10 O -0.352 6.352 11 C 0.076 3.924 12 C 0.024 3.976 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.022 4.022 22 C -0.152 4.152 23 C 0.137 3.863 24 O -0.299 6.299 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.153 0.847 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.209 12.563 -1.723 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.107 0.893 4 C -0.140 4.140 5 C -0.195 4.195 6 C -0.025 4.025 7 C -0.150 4.150 8 C 0.351 3.649 9 O -0.410 6.410 10 O -0.269 6.269 11 C 0.004 3.996 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.040 4.040 22 C -0.170 4.170 23 C 0.091 3.909 24 O -0.213 6.213 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.157 0.843 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.171 0.829 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.168 12.475 -1.705 25.494 hybrid contribution 0.922 -0.481 -0.651 1.227 sum -21.246 11.993 -2.356 24.511 Atomic orbital electron populations 1.21893 0.91914 1.03661 1.03241 1.23443 0.95895 0.95508 0.83218 0.89250 1.21861 0.94400 0.99355 0.98387 1.20592 0.98146 1.06902 0.93850 1.20311 0.89775 0.91850 1.00550 1.19074 0.95470 1.06585 0.93903 1.20892 0.82716 0.76048 0.85279 1.90794 1.78642 1.56003 1.15513 1.86566 1.31178 1.67613 1.41502 1.23671 0.83095 0.95416 0.97451 1.19180 0.91541 0.96892 0.93688 1.21016 1.04242 1.37781 0.93302 0.92189 1.24984 0.98400 0.95948 0.94866 1.69980 1.32843 1.45236 1.04796 0.86416 0.82038 0.79056 0.79815 1.19591 1.20834 1.20838 1.21335 0.96227 0.92624 0.93855 1.20261 0.92284 1.04230 1.00267 1.19893 0.86165 0.92036 0.92815 1.86808 1.34506 1.61859 1.38088 0.91278 0.91227 0.90148 0.88882 0.88805 0.84309 0.92214 0.92221 0.95299 0.95299 0.92764 0.82939 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.58 37.16 0.36 -0.40 16 2 C 0.08 0.55 4.26 -25.83 -0.11 0.44 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.10 -0.79 6.65 -26.50 -0.18 -0.97 16 5 C -0.19 -2.17 6.25 -104.13 -0.65 -2.82 16 6 C -0.01 -0.09 9.58 -39.32 -0.38 -0.46 16 7 C -0.15 -2.22 5.88 -104.94 -0.62 -2.84 16 8 C 0.51 9.39 7.89 34.49 0.27 9.66 16 9 O -0.52 -10.67 16.15 -19.27 -0.31 -10.99 16 10 O -0.35 -7.17 9.48 -40.62 -0.38 -7.56 16 11 C 0.08 1.72 5.41 37.16 0.20 1.92 16 12 C 0.02 0.63 5.35 -27.89 -0.15 0.48 16 13 C -0.53 -14.82 9.11 -34.45 -0.31 -15.14 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.02 -0.29 9.59 -39.28 -0.38 -0.67 16 22 C -0.15 -1.75 10.05 -39.35 -0.40 -2.15 16 23 C 0.14 1.60 7.05 -38.71 -0.27 1.33 16 24 O -0.30 -3.20 10.79 -19.66 -0.21 -3.41 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.63 7.93 -51.93 -0.41 0.22 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.14 1.72 7.66 -52.49 -0.40 1.32 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.15 1.92 7.61 -52.49 -0.40 1.52 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -32.10 323.25 -8.01 -40.11 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -4.98 Total: -3.79 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.71 Total: -10.02 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.91 Total: -21.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.10 -8.01 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850063402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.927 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds