Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47225 * 2 1 4 4 C 1.50703 * 109.46683 * 119.99783 * 2 1 3 5 5 H 1.08000 * 119.99815 * 119.99961 * 4 2 1 6 6 C 1.37877 * 119.99819 * 299.99768 * 4 2 1 7 7 N 1.31513 * 120.00524 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99567 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47427 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46976 * 120.00302 * 8 6 4 11 11 H 1.48498 * 109.47155 * 239.99787 * 8 6 4 12 12 O 1.45198 * 109.47274 * 239.99332 * 2 1 3 13 13 C 1.34712 * 116.99440 * 90.00130 * 12 2 1 14 14 O 1.21463 * 120.00517 * 0.02562 * 13 12 2 15 15 C 1.47734 * 119.99681 * 180.02562 * 13 12 2 16 16 C 1.39644 * 120.22862 * 359.95452 * 15 13 12 17 17 C 1.37734 * 119.73671 * 180.11732 * 16 15 13 18 18 C 1.38818 * 120.51464 * 0.02904 * 17 16 15 19 19 C 1.38082 * 120.01382 * 359.77006 * 18 17 16 20 20 C 1.38325 * 120.02409 * 0.33328 * 19 18 17 21 21 C 1.50775 * 121.33578 * 180.65077 * 19 18 17 22 22 C 1.52956 * 109.78437 * 342.80013 * 21 19 18 23 23 O 1.43209 * 108.49074 * 49.21392 * 22 21 19 24 24 C 1.42707 * 113.12452 * 289.29348 * 23 22 21 25 25 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47243 * 300.00575 * 1 2 3 27 27 H 1.09005 * 109.46827 * 60.00380 * 1 2 3 28 28 H 0.96993 * 120.00317 * 179.97438 * 7 6 4 29 29 H 1.08006 * 120.13646 * 0.16816 * 16 15 13 30 30 H 1.08005 * 119.74481 * 180.02562 * 17 16 15 31 31 H 1.07997 * 119.91547 * 179.48909 * 20 19 18 32 32 H 1.08995 * 109.41612 * 102.89879 * 21 19 18 33 33 H 1.08993 * 109.41725 * 222.70256 * 21 19 18 34 34 H 1.08991 * 109.63462 * 289.50550 * 22 21 19 35 35 H 1.09004 * 109.79406 * 169.00905 * 22 21 19 36 36 H 1.08997 * 109.34476 * 291.71653 * 24 23 22 37 37 H 1.09005 * 109.20730 * 172.12193 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.1482 -2.2856 3.6039 10 1 3.1470 -0.1856 4.8161 11 1 1.1676 -1.5863 4.8166 12 8 2.0141 -0.6846 -1.1854 13 6 2.2179 0.0666 -2.2850 14 8 1.9979 1.2607 -2.2541 15 6 2.7092 -0.5621 -3.5283 16 6 2.9647 -1.9344 -3.5688 17 6 3.4248 -2.5096 -4.7327 18 6 3.6370 -1.7357 -5.8654 19 6 3.3823 -0.3790 -5.8327 20 6 2.9220 0.2110 -4.6693 21 6 3.5885 0.4872 -7.0495 22 6 4.4727 -0.2436 -8.0613 23 8 3.9541 -1.5656 -8.2462 24 6 4.1514 -2.4088 -7.1119 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7081 1.1610 3.4843 29 1 2.8014 -2.5425 -2.6913 30 1 3.6220 -3.5710 -4.7643 31 1 2.7312 1.2736 -4.6432 32 1 2.6231 0.7081 -7.5048 33 1 4.0703 1.4190 -6.7536 34 1 5.4931 -0.3000 -7.6825 35 1 4.4640 0.2896 -9.0120 36 1 5.2152 -2.6166 -6.9972 37 1 3.6151 -3.3455 -7.2638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850841781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = -117.524042 kcal Electronic energy + Delta-G solvation = -20717.027446 eV Core-core repulsion = 17423.905696 eV Total energy + Delta-G solvation = -3293.121750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51686 -39.34645 -37.49847 -35.67516 -33.39983 -33.15532 -31.97148 -29.62896 -29.53116 -26.37108 -25.32894 -24.10118 -23.07340 -21.84432 -20.74460 -19.31126 -17.49508 -16.96923 -16.71021 -16.07117 -15.91655 -15.63767 -15.01466 -14.89838 -14.64618 -14.21515 -13.84095 -13.45976 -13.30993 -12.97293 -12.49275 -12.42028 -12.19530 -11.95151 -11.58264 -11.26998 -11.16944 -11.08535 -10.90059 -10.85264 -10.37535 -10.30247 -10.04681 -9.71162 -9.56879 -8.92213 -8.87888 -8.71008 -8.51096 -6.20226 -4.27244 0.79792 1.30081 2.95747 3.22499 3.28869 3.33497 3.54498 3.61056 3.89698 4.31227 4.42414 4.48710 4.63515 4.83637 4.93538 5.06620 5.12382 5.13409 5.23636 5.34268 5.37065 5.53814 5.64931 5.67812 5.82482 5.95698 6.27789 6.35182 6.44307 6.62951 6.78853 6.82081 6.88152 6.89692 7.12698 7.57302 7.70315 7.90373 8.11334 8.59191 8.85365 9.38227 10.87376 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038477 B = 0.003566 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.542172 B = 7849.385990 C = 8264.352291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.350 6.350 13 C 0.495 3.505 14 O -0.517 6.517 15 C -0.107 4.107 16 C -0.063 4.063 17 C -0.126 4.126 18 C -0.100 4.100 19 C -0.091 4.091 20 C -0.058 4.058 21 C -0.113 4.113 22 C 0.059 3.941 23 O -0.376 6.376 24 C 0.100 3.900 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.016 0.984 28 H 0.266 0.734 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 -4.965 -18.702 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.266 6.266 13 C 0.339 3.661 14 O -0.408 6.408 15 C -0.108 4.108 16 C -0.081 4.081 17 C -0.144 4.144 18 C -0.100 4.100 19 C -0.091 4.091 20 C -0.076 4.076 21 C -0.150 4.150 22 C -0.018 4.018 23 O -0.294 6.294 24 C 0.024 3.976 25 H 0.056 0.944 26 H 0.118 0.882 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.132 -4.564 -18.655 20.160 hybrid contribution 0.224 -0.109 1.330 1.353 sum 6.356 -4.673 -17.325 19.036 Atomic orbital electron populations 1.22168 0.97465 1.00186 1.01465 1.20686 0.91458 0.93993 0.77590 0.93476 1.21058 1.32480 1.13496 0.88818 0.91212 1.24894 0.94921 0.95100 0.99091 1.69906 1.36065 1.22589 1.24113 0.86211 0.78634 0.79485 0.81759 1.19462 1.20736 1.20689 1.86534 1.75753 1.43211 1.21109 1.21006 0.75061 0.85272 0.84732 1.90758 1.48946 1.16295 1.84838 1.19414 1.04323 0.94443 0.92647 1.21522 0.94283 0.93873 0.98416 1.20949 1.01193 1.00021 0.92232 1.20448 0.99329 0.93779 0.96459 1.19346 1.01310 0.93314 0.95127 1.21197 0.95292 1.00533 0.90584 1.21105 1.01981 0.98309 0.93620 1.22641 0.96197 0.83349 0.99603 1.88067 1.81397 1.22828 1.37152 1.21493 1.00198 0.93292 0.82629 0.94366 0.88161 0.96488 0.92418 0.83815 0.85132 0.84493 0.89510 0.89427 0.92521 0.88205 0.91401 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.33 37.16 0.35 -3.65 16 2 C 0.21 5.85 2.56 -27.88 -0.07 5.78 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.67 8.90 -34.44 -0.31 -14.97 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 O -0.35 -8.49 9.13 -40.52 -0.37 -8.86 16 13 C 0.50 10.92 7.87 34.61 0.27 11.20 16 14 O -0.52 -12.64 15.60 -19.24 -0.30 -12.94 16 15 C -0.11 -1.86 5.87 -105.04 -0.62 -2.47 16 16 C -0.06 -0.93 9.62 -39.24 -0.38 -1.30 16 17 C -0.13 -1.48 9.65 -39.55 -0.38 -1.86 16 18 C -0.10 -1.15 5.82 -104.46 -0.61 -1.75 16 19 C -0.09 -1.13 5.77 -104.61 -0.60 -1.73 16 20 C -0.06 -0.87 9.22 -39.10 -0.36 -1.23 16 21 C -0.11 -1.06 6.00 -27.87 -0.17 -1.23 16 22 C 0.06 0.48 6.85 37.13 0.25 0.74 16 23 O -0.38 -3.85 10.80 -35.23 -0.38 -4.24 16 24 C 0.10 0.90 6.65 36.01 0.24 1.14 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.14 2.11 7.62 -52.48 -0.40 1.71 16 30 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.14 2.03 7.64 -52.49 -0.40 1.63 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -31.85 314.85 -8.01 -39.85 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.83 Total: -0.16 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.47 Total: -9.73 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.63 Total: -24.71 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.05 Total: -26.03 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.85 -8.01 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850841781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.671 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds