Wall clock time and date at job start Mon Mar 30 2020 02:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47225 * 2 1 4 4 C 1.50703 * 109.46683 * 119.99783 * 2 1 3 5 5 H 1.08000 * 119.99815 * 119.99961 * 4 2 1 6 6 C 1.37877 * 119.99819 * 299.99768 * 4 2 1 7 7 N 1.31513 * 120.00524 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99567 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47427 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46976 * 120.00302 * 8 6 4 11 11 H 1.48498 * 109.47155 * 239.99787 * 8 6 4 12 12 O 1.45198 * 109.47274 * 239.99332 * 2 1 3 13 13 C 1.34712 * 116.99440 * 90.00130 * 12 2 1 14 14 O 1.21463 * 120.00517 * 0.02562 * 13 12 2 15 15 C 1.47734 * 119.99681 * 180.02562 * 13 12 2 16 16 C 1.39644 * 120.22862 * 359.95452 * 15 13 12 17 17 C 1.37734 * 119.73671 * 180.11732 * 16 15 13 18 18 C 1.38818 * 120.51464 * 0.02904 * 17 16 15 19 19 C 1.38082 * 120.01382 * 359.77006 * 18 17 16 20 20 C 1.38325 * 120.02409 * 0.33328 * 19 18 17 21 21 C 1.50775 * 121.33578 * 180.65077 * 19 18 17 22 22 C 1.52956 * 109.78437 * 342.80013 * 21 19 18 23 23 O 1.43209 * 108.49074 * 49.21392 * 22 21 19 24 24 C 1.42707 * 113.12452 * 289.29348 * 23 22 21 25 25 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47243 * 300.00575 * 1 2 3 27 27 H 1.09005 * 109.46827 * 60.00380 * 1 2 3 28 28 H 0.96993 * 120.00317 * 179.97438 * 7 6 4 29 29 H 1.08006 * 120.13646 * 0.16816 * 16 15 13 30 30 H 1.08005 * 119.74481 * 180.02562 * 17 16 15 31 31 H 1.07997 * 119.91547 * 179.48909 * 20 19 18 32 32 H 1.08995 * 109.41612 * 102.89879 * 21 19 18 33 33 H 1.08993 * 109.41725 * 222.70256 * 21 19 18 34 34 H 1.08991 * 109.63462 * 289.50550 * 22 21 19 35 35 H 1.09004 * 109.79406 * 169.00905 * 22 21 19 36 36 H 1.08997 * 109.34476 * 291.71653 * 24 23 22 37 37 H 1.09005 * 109.20730 * 172.12193 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.1482 -2.2856 3.6039 10 1 3.1470 -0.1856 4.8161 11 1 1.1676 -1.5863 4.8166 12 8 2.0141 -0.6846 -1.1854 13 6 2.2179 0.0666 -2.2850 14 8 1.9979 1.2607 -2.2541 15 6 2.7092 -0.5621 -3.5283 16 6 2.9647 -1.9344 -3.5688 17 6 3.4248 -2.5096 -4.7327 18 6 3.6370 -1.7357 -5.8654 19 6 3.3823 -0.3790 -5.8327 20 6 2.9220 0.2110 -4.6693 21 6 3.5885 0.4872 -7.0495 22 6 4.4727 -0.2436 -8.0613 23 8 3.9541 -1.5656 -8.2462 24 6 4.1514 -2.4088 -7.1119 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7081 1.1610 3.4843 29 1 2.8014 -2.5425 -2.6913 30 1 3.6220 -3.5710 -4.7643 31 1 2.7312 1.2736 -4.6432 32 1 2.6231 0.7081 -7.5048 33 1 4.0703 1.4190 -6.7536 34 1 5.4931 -0.3000 -7.6825 35 1 4.4640 0.2896 -9.0120 36 1 5.2152 -2.6166 -6.9972 37 1 3.6151 -3.3455 -7.2638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850841781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:09 Heat of formation + Delta-G solvation = -136.061858 kcal Electronic energy + Delta-G solvation = -20717.831306 eV Core-core repulsion = 17423.905696 eV Total energy + Delta-G solvation = -3293.925610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70929 -40.83198 -38.51087 -37.55463 -35.38626 -34.11934 -33.10924 -31.62078 -30.48240 -27.57961 -27.36592 -24.93804 -24.42954 -23.10821 -22.33783 -20.76662 -19.05143 -18.56453 -17.98915 -17.41579 -17.09916 -16.85397 -16.62787 -16.44932 -15.77761 -15.34302 -15.01292 -14.70988 -14.36275 -14.32481 -14.17048 -13.86094 -13.37552 -13.27714 -13.19928 -13.03069 -12.84867 -12.52485 -12.43843 -12.16569 -12.09696 -11.75358 -11.64465 -11.50262 -11.03648 -10.71379 -10.64214 -9.92700 -9.75380 -8.31830 -6.49334 -0.41671 0.25210 1.40576 1.41917 1.48619 1.55755 1.89091 2.38823 2.63167 2.94431 2.98992 3.54397 3.60024 3.78200 3.79847 3.99958 4.19403 4.27488 4.39249 4.43313 4.50552 4.54319 4.72229 4.73493 4.76285 4.77129 4.83288 4.94505 5.03915 5.06988 5.21741 5.30887 5.39171 5.44426 5.56389 5.78464 5.84290 5.99948 6.13260 6.55225 6.85421 7.22216 8.76588 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038477 B = 0.003566 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.542172 B = 7849.385990 C = 8264.352291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.270 1.270 12 O -0.354 6.354 13 C 0.490 3.510 14 O -0.554 6.554 15 C -0.140 4.140 16 C -0.071 4.071 17 C -0.114 4.114 18 C -0.089 4.089 19 C -0.094 4.094 20 C -0.066 4.066 21 C -0.114 4.114 22 C 0.058 3.942 23 O -0.391 6.391 24 C 0.099 3.901 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.020 0.980 28 H 0.272 0.728 29 H 0.139 0.861 30 H 0.171 0.829 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.786 -7.168 -20.305 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.810 3.190 9 H -0.186 1.186 10 H -0.201 1.201 11 H -0.195 1.195 12 O -0.270 6.270 13 C 0.337 3.663 14 O -0.447 6.447 15 C -0.141 4.141 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.089 4.089 19 C -0.094 4.094 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.018 4.018 23 O -0.309 6.309 24 C 0.022 3.978 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.188 0.812 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.527 -6.771 -20.286 22.673 hybrid contribution -0.175 0.599 1.670 1.783 sum 7.352 -6.173 -18.616 20.946 Atomic orbital electron populations 1.21995 0.96660 1.00543 1.00803 1.20424 0.92128 0.92139 0.78986 0.97557 1.21314 1.33536 1.13985 0.89736 0.91229 1.25882 0.94643 0.95664 1.02246 1.70024 1.36544 1.23712 1.25289 0.85077 0.78372 0.78394 0.77200 1.18570 1.20097 1.19527 1.86519 1.76164 1.43153 1.21187 1.21941 0.74001 0.85051 0.85309 1.90718 1.50794 1.17811 1.85374 1.19254 1.07877 0.95940 0.91013 1.21574 0.94948 0.92598 0.99780 1.21310 0.99201 1.01881 0.90725 1.20947 0.97015 0.93351 0.97601 1.19712 1.00198 0.94449 0.95039 1.21229 0.95996 1.00148 0.91011 1.21213 1.02745 0.98502 0.92676 1.22803 0.96106 0.82628 1.00280 1.88065 1.81737 1.23623 1.37501 1.21736 1.01761 0.93450 0.80804 0.93325 0.89797 0.96058 0.91895 0.84315 0.81191 0.85421 0.89265 0.88340 0.91457 0.85981 0.88994 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.62 9.33 71.98 0.67 -6.95 16 2 C 0.22 12.38 2.56 29.85 0.08 12.46 16 3 H 0.01 0.42 7.16 -2.39 -0.02 0.41 16 4 C -0.55 -31.75 8.90 25.60 0.23 -31.52 16 5 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 8 Si 0.99 43.13 29.54 68.60 2.03 45.15 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 12 O -0.35 -18.07 9.13 -56.22 -0.51 -18.58 16 13 C 0.49 22.95 7.87 70.33 0.55 23.51 16 14 O -0.55 -29.04 15.60 19.95 0.31 -28.72 16 15 C -0.14 -5.01 5.87 -20.14 -0.12 -5.13 16 16 C -0.07 -2.06 9.62 22.49 0.22 -1.85 16 17 C -0.11 -2.34 9.65 22.29 0.22 -2.12 16 18 C -0.09 -1.77 5.82 -19.76 -0.11 -1.88 16 19 C -0.09 -2.19 5.77 -19.86 -0.11 -2.30 16 20 C -0.07 -2.00 9.22 22.58 0.21 -1.80 16 21 C -0.11 -1.91 6.00 29.86 0.18 -1.73 16 22 C 0.06 0.75 6.85 71.97 0.49 1.24 16 23 O -0.39 -6.48 10.80 -148.98 -1.61 -8.09 16 24 C 0.10 1.33 6.65 71.24 0.47 1.81 16 25 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.08 4.76 6.07 -2.39 -0.01 4.75 16 27 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.14 4.10 7.62 -2.91 -0.02 4.08 16 30 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.13 4.01 7.64 -2.91 -0.02 3.99 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 0.74 8.07 -2.39 -0.02 0.72 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -71.96 314.85 4.95 -67.01 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.07 Total: 11.41 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 3.42 Total: -14.97 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.24 Total: -53.22 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -1.81 Total: -55.39 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -71.96 4.95 -67.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850841781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.048 kcal (2) G-P(sol) polarization free energy of solvation -71.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds