Wall clock time and date at job start Mon Mar 30 2020 02:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 O 1.45194 * 109.47240 * 120.00043 * 2 1 3 13 13 C 1.34714 * 116.99700 * 269.99716 * 12 2 1 14 14 O 1.21467 * 120.00351 * 0.02562 * 13 12 2 15 15 C 1.47732 * 119.99725 * 179.97438 * 13 12 2 16 16 C 1.39651 * 120.23014 * 359.73050 * 15 13 12 17 17 C 1.37734 * 119.73633 * 179.82528 * 16 15 13 18 18 C 1.38816 * 120.51330 * 0.53133 * 17 16 15 19 19 C 1.38084 * 120.01543 * 359.51569 * 18 17 16 20 20 C 1.38321 * 120.02363 * 0.35129 * 19 18 17 21 21 C 1.50773 * 121.33608 * 180.64461 * 19 18 17 22 22 C 1.52952 * 109.78151 * 342.78028 * 21 19 18 23 23 O 1.43208 * 108.48911 * 49.22985 * 22 21 19 24 24 C 1.42705 * 113.13531 * 289.30273 * 23 22 21 25 25 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 27 27 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 28 28 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 29 29 H 1.08004 * 120.12920 * 0.10104 * 16 15 13 30 30 H 1.08001 * 119.74532 * 180.24797 * 17 16 15 31 31 H 1.07999 * 119.92025 * 179.76411 * 20 19 18 32 32 H 1.08996 * 109.41526 * 102.87035 * 21 19 18 33 33 H 1.08994 * 109.41787 * 222.68237 * 21 19 18 34 34 H 1.09002 * 109.63903 * 289.52612 * 22 21 19 35 35 H 1.09003 * 109.79993 * 169.03079 * 22 21 19 36 36 H 1.09001 * 109.33545 * 291.68856 * 24 23 22 37 37 H 1.09000 * 109.20189 * 172.09855 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2870 -3.6038 10 1 1.1661 -1.5868 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 8 2.0140 -0.6845 1.1855 13 6 2.2179 0.0668 2.2850 14 8 1.9970 1.2608 2.2543 15 6 2.7091 -0.5618 3.5283 16 6 2.9583 -1.9352 3.5709 17 6 3.4196 -2.5101 4.7345 18 6 3.6283 -1.7367 5.8682 19 6 3.3827 -0.3784 5.8325 20 6 2.9218 0.2113 4.6693 21 6 3.6127 0.4920 7.0420 22 6 3.7046 -0.3784 8.2963 23 8 4.6237 -1.4466 8.0414 24 6 4.1181 -2.4141 7.1223 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1613 -3.4845 29 1 2.7943 -2.5434 2.6937 30 1 3.6162 -3.5716 4.7664 31 1 2.7267 1.2732 4.6444 32 1 4.5424 1.0472 6.9173 33 1 2.7845 1.1928 7.1469 34 1 2.7222 -0.7885 8.5303 35 1 4.0611 0.2193 9.1352 36 1 3.2934 -2.9557 7.5856 37 1 4.9124 -3.1155 6.8670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850841782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:11 Heat of formation + Delta-G solvation = -117.512719 kcal Electronic energy + Delta-G solvation = -20717.010932 eV Core-core repulsion = 17423.889673 eV Total energy + Delta-G solvation = -3293.121259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51711 -39.34638 -37.49860 -35.67527 -33.39949 -33.15512 -31.97154 -29.62967 -29.53203 -26.37164 -25.32921 -24.10162 -23.07363 -21.84444 -20.74603 -19.31060 -17.49539 -16.97281 -16.70671 -16.07576 -15.91094 -15.63560 -15.05909 -14.84234 -14.64999 -14.21500 -13.86317 -13.46903 -13.30985 -12.93196 -12.47212 -12.42052 -12.27890 -11.90135 -11.60090 -11.23517 -11.20516 -11.07690 -10.90136 -10.85044 -10.37602 -10.30124 -10.04804 -9.71221 -9.56898 -8.92136 -8.87967 -8.71005 -8.50961 -6.20158 -4.27113 0.79739 1.30062 2.95694 3.22732 3.29124 3.33785 3.54634 3.60859 3.89682 4.31430 4.42403 4.48638 4.63540 4.83495 4.93345 5.06443 5.12421 5.13433 5.23522 5.34218 5.37009 5.53744 5.64909 5.67933 5.82456 5.95712 6.27754 6.35165 6.44276 6.62640 6.78885 6.82073 6.87631 6.89413 7.12511 7.57358 7.70144 7.90337 8.11318 8.59216 8.85472 9.38379 10.87448 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.003571 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.866059 B = 7839.469681 C = 8278.902813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.350 6.350 13 C 0.495 3.505 14 O -0.517 6.517 15 C -0.107 4.107 16 C -0.063 4.063 17 C -0.126 4.126 18 C -0.100 4.100 19 C -0.091 4.091 20 C -0.058 4.058 21 C -0.113 4.113 22 C 0.059 3.941 23 O -0.376 6.376 24 C 0.100 3.900 25 H 0.037 0.963 26 H 0.016 0.984 27 H 0.100 0.900 28 H 0.266 0.734 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -5.344 19.354 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.266 6.266 13 C 0.339 3.661 14 O -0.408 6.408 15 C -0.108 4.108 16 C -0.081 4.081 17 C -0.144 4.144 18 C -0.100 4.100 19 C -0.091 4.091 20 C -0.076 4.076 21 C -0.150 4.150 22 C -0.018 4.018 23 O -0.294 6.294 24 C 0.024 3.976 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.276 -4.894 19.223 20.292 hybrid contribution -0.147 -0.174 -1.216 1.237 sum 4.129 -5.069 18.007 19.157 Atomic orbital electron populations 1.22165 0.97474 1.00171 1.01458 1.20686 0.91446 0.94006 0.77594 0.93473 1.21058 1.32471 1.13496 0.88817 0.91206 1.24895 0.94922 0.95103 0.99095 1.69915 1.36105 1.22564 1.24101 0.86208 0.78626 0.79494 0.81747 1.19456 1.20695 1.20732 1.86533 1.75756 1.43203 1.21112 1.21008 0.75054 0.85270 0.84738 1.90759 1.48940 1.16298 1.84840 1.19416 1.04349 0.94435 0.92622 1.21524 0.94256 0.93887 0.98432 1.20948 1.01235 1.00032 0.92173 1.20447 0.99176 0.93881 0.96517 1.19345 1.00999 0.93311 0.95437 1.21197 0.95369 1.00476 0.90567 1.21105 1.03562 0.97844 0.92509 1.22641 0.93712 0.88663 0.96766 1.88068 1.42438 1.35959 1.62975 1.21492 0.99566 0.90384 0.86161 0.94372 0.96499 0.88166 0.92425 0.83816 0.85132 0.84493 0.89489 0.89439 0.92543 0.88204 0.91417 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.33 37.16 0.35 -3.63 16 2 C 0.21 5.85 2.56 -27.88 -0.07 5.78 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 O -0.35 -8.49 9.13 -40.53 -0.37 -8.86 16 13 C 0.50 10.92 7.87 34.61 0.27 11.20 16 14 O -0.52 -12.64 15.61 -19.24 -0.30 -12.94 16 15 C -0.11 -1.86 5.87 -105.04 -0.62 -2.47 16 16 C -0.06 -0.93 9.62 -39.24 -0.38 -1.31 16 17 C -0.13 -1.47 9.65 -39.55 -0.38 -1.86 16 18 C -0.10 -1.15 5.82 -104.46 -0.61 -1.76 16 19 C -0.09 -1.13 5.77 -104.61 -0.60 -1.73 16 20 C -0.06 -0.87 9.22 -39.10 -0.36 -1.23 16 21 C -0.11 -1.06 6.00 -27.87 -0.17 -1.23 16 22 C 0.06 0.48 6.85 37.13 0.25 0.74 16 23 O -0.38 -3.86 10.80 -35.23 -0.38 -4.24 16 24 C 0.10 0.90 6.65 36.01 0.24 1.14 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.14 2.11 7.62 -52.48 -0.40 1.71 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 2.03 7.64 -52.49 -0.40 1.63 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.41 8.07 -51.93 -0.42 0.00 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -31.87 314.85 -8.01 -39.88 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.83 Total: -0.19 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.47 Total: -9.73 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.63 Total: -24.73 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.05 Total: -26.04 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.87 -8.01 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850841782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.633 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds