Wall clock time and date at job start Mon Mar 30 2020 02:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 O 1.45194 * 109.47240 * 120.00043 * 2 1 3 13 13 C 1.34714 * 116.99700 * 269.99716 * 12 2 1 14 14 O 1.21467 * 120.00351 * 0.02562 * 13 12 2 15 15 C 1.47732 * 119.99725 * 179.97438 * 13 12 2 16 16 C 1.39651 * 120.23014 * 359.73050 * 15 13 12 17 17 C 1.37734 * 119.73633 * 179.82528 * 16 15 13 18 18 C 1.38816 * 120.51330 * 0.53133 * 17 16 15 19 19 C 1.38084 * 120.01543 * 359.51569 * 18 17 16 20 20 C 1.38321 * 120.02363 * 0.35129 * 19 18 17 21 21 C 1.50773 * 121.33608 * 180.64461 * 19 18 17 22 22 C 1.52952 * 109.78151 * 342.78028 * 21 19 18 23 23 O 1.43208 * 108.48911 * 49.22985 * 22 21 19 24 24 C 1.42705 * 113.13531 * 289.30273 * 23 22 21 25 25 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 27 27 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 28 28 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 29 29 H 1.08004 * 120.12920 * 0.10104 * 16 15 13 30 30 H 1.08001 * 119.74532 * 180.24797 * 17 16 15 31 31 H 1.07999 * 119.92025 * 179.76411 * 20 19 18 32 32 H 1.08996 * 109.41526 * 102.87035 * 21 19 18 33 33 H 1.08994 * 109.41787 * 222.68237 * 21 19 18 34 34 H 1.09002 * 109.63903 * 289.52612 * 22 21 19 35 35 H 1.09003 * 109.79993 * 169.03079 * 22 21 19 36 36 H 1.09001 * 109.33545 * 291.68856 * 24 23 22 37 37 H 1.09000 * 109.20189 * 172.09855 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2870 -3.6038 10 1 1.1661 -1.5868 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 8 2.0140 -0.6845 1.1855 13 6 2.2179 0.0668 2.2850 14 8 1.9970 1.2608 2.2543 15 6 2.7091 -0.5618 3.5283 16 6 2.9583 -1.9352 3.5709 17 6 3.4196 -2.5101 4.7345 18 6 3.6283 -1.7367 5.8682 19 6 3.3827 -0.3784 5.8325 20 6 2.9218 0.2113 4.6693 21 6 3.6127 0.4920 7.0420 22 6 3.7046 -0.3784 8.2963 23 8 4.6237 -1.4466 8.0414 24 6 4.1181 -2.4141 7.1223 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1613 -3.4845 29 1 2.7943 -2.5434 2.6937 30 1 3.6162 -3.5716 4.7664 31 1 2.7267 1.2732 4.6444 32 1 4.5424 1.0472 6.9173 33 1 2.7845 1.1928 7.1469 34 1 2.7222 -0.7885 8.5303 35 1 4.0611 0.2193 9.1352 36 1 3.2934 -2.9557 7.5856 37 1 4.9124 -3.1155 6.8670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850841782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:11 Heat of formation + Delta-G solvation = -136.083682 kcal Electronic energy + Delta-G solvation = -20717.816229 eV Core-core repulsion = 17423.889673 eV Total energy + Delta-G solvation = -3293.926556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70896 -40.83179 -38.51068 -37.55435 -35.38609 -34.11959 -33.10919 -31.62032 -30.48228 -27.57934 -27.36590 -24.93768 -24.42905 -23.10791 -22.33830 -20.76554 -19.05089 -18.56698 -17.98956 -17.40839 -17.11191 -16.84630 -16.62483 -16.45295 -15.76592 -15.35002 -15.01339 -14.75933 -14.36369 -14.26360 -14.06872 -13.99639 -13.31342 -13.29724 -13.23337 -13.01358 -12.84691 -12.54305 -12.42717 -12.16450 -12.09606 -11.75162 -11.64594 -11.50283 -11.03693 -10.71436 -10.63970 -9.92717 -9.75370 -8.31964 -6.49401 -0.41701 0.25204 1.40496 1.41808 1.48576 1.55669 1.89103 2.38757 2.63155 2.94479 2.98911 3.54439 3.60033 3.78208 3.79891 3.99994 4.19405 4.27556 4.39258 4.43349 4.50560 4.54343 4.72276 4.73537 4.76214 4.77279 4.83245 4.94545 5.04048 5.07082 5.21758 5.30897 5.39195 5.44442 5.56514 5.78468 5.84350 5.99925 6.13493 6.55139 6.85412 7.22162 8.76434 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.003571 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.866059 B = 7839.469681 C = 8278.902813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.006 0.994 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.262 1.262 10 H -0.270 1.270 11 H -0.276 1.276 12 O -0.354 6.354 13 C 0.490 3.510 14 O -0.554 6.554 15 C -0.140 4.140 16 C -0.071 4.071 17 C -0.114 4.114 18 C -0.089 4.089 19 C -0.094 4.094 20 C -0.066 4.066 21 C -0.114 4.114 22 C 0.058 3.942 23 O -0.391 6.391 24 C 0.099 3.901 25 H 0.048 0.952 26 H 0.021 0.979 27 H 0.083 0.917 28 H 0.272 0.728 29 H 0.139 0.861 30 H 0.171 0.829 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -7.612 21.081 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.186 1.186 10 H -0.195 1.195 11 H -0.201 1.201 12 O -0.270 6.270 13 C 0.337 3.663 14 O -0.447 6.447 15 C -0.141 4.141 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.089 4.089 19 C -0.094 4.094 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.018 4.018 23 O -0.310 6.310 24 C 0.023 3.977 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.188 0.812 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.270 -7.166 20.979 22.787 hybrid contribution -0.423 0.553 -1.594 1.740 sum 4.847 -6.613 19.385 21.047 Atomic orbital electron populations 1.21988 0.96595 1.00558 1.00818 1.20425 0.92170 0.92118 0.78977 0.97595 1.21314 1.33530 1.13980 0.89758 0.91258 1.25879 0.94646 0.95671 1.02238 1.70032 1.36575 1.23674 1.25275 0.85078 0.78378 0.78388 0.77210 1.18599 1.19481 1.20120 1.86518 1.76170 1.43147 1.21189 1.21942 0.73993 0.85050 0.85316 1.90719 1.50789 1.17814 1.85378 1.19255 1.07909 0.95930 0.90990 1.21576 0.94915 0.92609 0.99800 1.21309 0.99240 1.01898 0.90668 1.20946 0.96811 0.93478 0.97678 1.19710 0.99871 0.94459 0.95355 1.21229 0.96082 1.00082 0.90990 1.21213 1.04095 0.97943 0.91895 1.22804 0.94246 0.88296 0.96456 1.88065 1.43381 1.36550 1.62973 1.21735 1.01133 0.90231 0.84647 0.93296 0.96006 0.89819 0.91899 0.84317 0.81192 0.85422 0.89347 0.88283 0.91389 0.86003 0.88921 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.57 9.33 71.98 0.67 -6.90 16 2 C 0.22 12.37 2.56 29.85 0.08 12.45 16 3 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 4 C -0.55 -31.80 8.90 25.60 0.23 -31.58 16 5 H 0.07 3.92 7.81 -2.91 -0.02 3.89 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.48 11.32 21.45 0.24 -53.23 16 8 Si 0.99 43.22 29.54 68.60 2.03 45.24 16 9 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 O -0.35 -18.07 9.13 -56.24 -0.51 -18.58 16 13 C 0.49 22.95 7.87 70.33 0.55 23.50 16 14 O -0.55 -29.03 15.61 19.94 0.31 -28.72 16 15 C -0.14 -5.01 5.87 -20.13 -0.12 -5.13 16 16 C -0.07 -2.06 9.62 22.49 0.22 -1.85 16 17 C -0.11 -2.34 9.65 22.29 0.21 -2.12 16 18 C -0.09 -1.77 5.82 -19.76 -0.11 -1.88 16 19 C -0.09 -2.19 5.77 -19.86 -0.11 -2.30 16 20 C -0.07 -2.00 9.22 22.58 0.21 -1.80 16 21 C -0.11 -1.91 6.00 29.86 0.18 -1.73 16 22 C 0.06 0.75 6.85 71.97 0.49 1.24 16 23 O -0.39 -6.51 10.80 -148.98 -1.61 -8.12 16 24 C 0.10 1.33 6.65 71.24 0.47 1.81 16 25 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 4.74 6.07 -2.39 -0.01 4.73 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.14 4.10 7.62 -2.91 -0.02 4.08 16 30 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.13 4.01 7.64 -2.91 -0.02 3.99 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 0.73 8.07 -2.39 -0.02 0.72 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.05 314.85 4.95 -67.11 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.07 Total: 11.29 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 3.42 Total: -14.98 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.24 Total: -53.23 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -1.81 Total: -55.42 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -72.05 4.95 -67.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850841782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.978 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds