Wall clock time and date at job start Mon Mar 30 2020 02:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 O 1.45202 * 109.47203 * 239.99344 * 2 1 3 13 13 C 1.34748 * 116.99727 * 90.00210 * 12 2 1 14 14 O 1.21508 * 120.00017 * 0.02562 * 13 12 2 15 15 C 1.47460 * 120.00185 * 179.97438 * 13 12 2 16 16 C 1.39823 * 120.26984 * 0.02562 * 15 13 12 17 17 C 1.37440 * 120.19676 * 179.87422 * 16 15 13 18 18 C 1.39616 * 120.43741 * 0.06234 * 17 16 15 19 19 C 1.39200 * 119.10893 * 0.16924 * 18 17 16 20 20 C 1.37286 * 120.94412 * 359.37240 * 19 18 17 21 21 C 1.51678 * 106.99325 * 179.44029 * 19 18 17 22 22 C 1.54707 * 101.89267 * 344.47604 * 21 19 18 23 23 H 1.08999 * 110.74123 * 143.70851 * 22 21 19 24 24 C 1.53003 * 110.74242 * 267.04955 * 22 21 19 25 25 O 1.35988 * 129.71202 * 180.60268 * 18 17 16 26 26 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 27 27 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 28 28 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 30 30 H 1.07994 * 119.89891 * 359.84751 * 16 15 13 31 31 H 1.07997 * 119.78403 * 180.02562 * 17 16 15 32 32 H 1.07996 * 120.07489 * 180.58873 * 20 19 18 33 33 H 1.09001 * 110.94530 * 226.32655 * 21 19 18 34 34 H 1.09000 * 110.94740 * 102.62171 * 21 19 18 35 35 H 1.08993 * 109.46830 * 174.85667 * 24 22 21 36 36 H 1.09005 * 109.46315 * 294.85171 * 24 22 21 37 37 H 1.08995 * 109.47170 * 54.84872 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0667 -2.2853 14 8 1.9978 1.2613 -2.2544 15 6 2.7093 -0.5606 -3.5261 16 6 2.9650 -1.9346 -3.5678 17 6 3.4206 -2.5181 -4.7258 18 6 3.6337 -1.7470 -5.8700 19 6 3.3821 -0.3788 -5.8211 20 6 2.9180 0.2130 -4.6725 21 6 3.7148 0.1823 -7.1904 22 6 4.5397 -0.9681 -7.8145 23 1 4.3315 -1.0580 -8.8807 24 6 6.0351 -0.7579 -7.5686 25 8 4.0643 -2.1235 -7.1037 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.9153 -0.5190 4.4376 30 1 2.8045 -2.5390 -2.6873 31 1 3.6155 -3.5801 -4.7507 32 1 2.7184 1.2741 -4.6530 33 1 4.3134 1.0892 -7.1049 34 1 2.8081 0.3684 -7.7661 35 1 6.5886 -1.6223 -7.9352 36 1 6.3677 0.1366 -8.0954 37 1 6.2143 -0.6381 -6.5002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850841878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:30 Heat of formation + Delta-G solvation = -91.691552 kcal Electronic energy + Delta-G solvation = -20785.839164 eV Core-core repulsion = 17493.837595 eV Total energy + Delta-G solvation = -3292.001569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46363 -39.69358 -37.43162 -35.81143 -33.44401 -33.18768 -31.26856 -30.71525 -30.15882 -27.10667 -25.29793 -24.33547 -22.17488 -21.84676 -21.51728 -19.79492 -17.74299 -17.33932 -16.82181 -16.42511 -16.12172 -15.82379 -15.27848 -14.71068 -14.35545 -14.06353 -13.79395 -13.30676 -13.13406 -12.99283 -12.69757 -12.62586 -12.50098 -12.37653 -12.29049 -11.85617 -11.59091 -11.45648 -11.02165 -10.89669 -10.87143 -10.23781 -10.04630 -9.77688 -9.61964 -9.12822 -9.05062 -8.69115 -8.31292 -6.22854 -4.25244 0.79292 1.23110 2.80367 3.02887 3.18949 3.31157 3.33350 3.42986 3.82079 4.11456 4.26693 4.31804 4.52780 4.67973 4.81832 4.97205 5.08351 5.12542 5.22818 5.28476 5.36815 5.43341 5.53621 5.56164 5.76967 5.90369 6.06086 6.16825 6.19887 6.27698 6.34708 6.41378 6.44746 6.61279 6.96387 7.02377 7.34628 7.50172 8.21899 8.58255 8.83942 9.34189 10.89222 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.040397 B = 0.003696 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.951707 B = 7574.656592 C = 7846.038895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.047 0.953 4 C -0.525 4.525 5 H 0.088 0.912 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.262 1.262 12 O -0.336 6.336 13 C 0.502 3.498 14 O -0.522 6.522 15 C -0.145 4.145 16 C -0.023 4.023 17 C -0.152 4.152 18 C 0.133 3.867 19 C -0.192 4.192 20 C -0.009 4.009 21 C -0.103 4.103 22 C 0.076 3.924 23 H 0.117 0.883 24 C -0.173 4.173 25 O -0.298 6.298 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.269 0.731 30 H 0.153 0.847 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -0.107 -22.541 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.138 3.862 3 H 0.065 0.935 4 C -0.563 4.563 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.187 1.187 12 O -0.252 6.252 13 C 0.347 3.653 14 O -0.414 6.414 15 C -0.146 4.146 16 C -0.041 4.041 17 C -0.171 4.171 18 C 0.087 3.913 19 C -0.193 4.193 20 C -0.027 4.027 21 C -0.140 4.140 22 C 0.020 3.980 23 H 0.134 0.866 24 C -0.230 4.230 25 O -0.212 6.212 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.842 0.009 -22.376 22.703 hybrid contribution -0.668 1.039 0.312 1.274 sum 3.174 1.048 -22.065 22.316 Atomic orbital electron populations 1.22525 0.98428 1.01923 0.99849 1.20947 0.90503 0.94501 0.80271 0.93550 1.20779 1.33491 1.14777 0.87211 0.89428 1.24726 0.95644 0.96730 0.95236 1.69835 1.44665 1.40014 0.97997 0.86973 0.80777 0.83663 0.77803 1.19968 1.21670 1.18680 1.86558 1.75833 1.42297 1.20471 1.20891 0.74725 0.85167 0.84510 1.90764 1.49481 1.16259 1.84857 1.19138 1.08558 0.94278 0.92637 1.21342 0.91597 0.93693 0.97505 1.20248 1.06607 1.00620 0.89585 1.19890 0.92811 0.92853 0.85734 1.20558 1.08073 0.94471 0.96199 1.20313 0.92820 1.00336 0.89235 1.21844 1.00871 0.99069 0.92216 1.23468 0.94419 0.82947 0.97151 0.86568 1.22260 0.94430 1.02883 1.03434 1.86848 1.76696 1.34316 1.23299 0.92521 0.94377 0.91713 0.92056 0.82954 0.84624 0.84397 0.88770 0.89016 0.91239 0.90548 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.03 37.16 0.34 -3.57 16 2 C 0.19 4.87 2.15 -27.88 -0.06 4.81 16 3 H 0.05 1.25 6.21 -51.93 -0.32 0.92 16 4 C -0.52 -15.04 9.48 -34.44 -0.33 -15.37 16 5 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 6 C 0.08 2.29 5.45 -17.82 -0.10 2.20 16 7 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 8 Si 0.88 21.69 24.37 -169.99 -4.14 17.55 16 9 H -0.27 -6.46 6.88 56.52 0.39 -6.07 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.39 6.52 56.52 0.37 -6.02 16 12 O -0.34 -7.73 9.12 -40.62 -0.37 -8.10 16 13 C 0.50 10.40 7.87 34.49 0.27 10.68 16 14 O -0.52 -11.88 15.62 -19.27 -0.30 -12.18 16 15 C -0.14 -2.38 5.88 -104.94 -0.62 -3.00 16 16 C -0.02 -0.33 9.59 -39.28 -0.38 -0.71 16 17 C -0.15 -1.90 10.05 -39.36 -0.40 -2.30 16 18 C 0.13 1.66 6.95 -38.71 -0.27 1.39 16 19 C -0.19 -2.32 6.25 -104.13 -0.65 -2.97 16 20 C -0.01 -0.12 9.58 -39.32 -0.38 -0.50 16 21 C -0.10 -0.86 6.65 -26.50 -0.18 -1.04 16 22 C 0.08 0.60 4.31 -25.83 -0.11 0.49 16 23 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 24 C -0.17 -1.20 9.49 37.16 0.35 -0.84 16 25 O -0.30 -3.37 10.81 -19.70 -0.21 -3.58 16 26 H 0.06 1.32 3.29 -51.93 -0.17 1.14 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.15 2.14 7.61 -52.49 -0.40 1.74 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 1.89 7.66 -52.49 -0.40 1.49 16 33 H 0.09 0.65 7.92 -51.93 -0.41 0.24 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -32.36 311.20 -6.75 -39.12 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.69 Total: -0.82 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.50 Total: -10.75 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.77 Total: -25.92 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.88 Total: -23.86 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.55 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.36 -6.75 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850841878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.576 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds