Wall clock time and date at job start Mon Mar 30 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.45851 * 2 1 4 4 C 1.54479 * 110.51044 * 237.38795 * 2 1 3 5 5 O 1.44649 * 104.69594 * 217.47477 * 4 2 1 6 6 C 1.44424 * 105.36740 * 40.35100 * 5 4 2 7 7 C 1.54477 * 104.80339 * 319.56447 * 6 5 4 8 8 H 1.08998 * 110.51383 * 142.62836 * 7 6 5 9 9 O 1.45206 * 110.50945 * 265.33234 * 7 6 5 10 10 C 1.34705 * 117.00335 * 264.64198 * 9 7 6 11 11 O 1.21470 * 119.99522 * 0.02562 * 10 9 7 12 12 C 1.47761 * 120.00397 * 180.02562 * 10 9 7 13 13 C 1.39973 * 120.02843 * 359.72106 * 12 10 9 14 14 C 1.38318 * 120.35137 * 179.78827 * 13 12 10 15 15 C 1.37761 * 120.41867 * 0.46990 * 14 13 12 16 16 C 1.40749 * 120.04953 * 359.78894 * 15 14 13 17 17 C 1.41443 * 120.17492 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99981 * 24.48675 * 17 16 15 19 19 C 1.39933 * 119.99956 * 204.48603 * 17 16 15 20 20 N 1.30822 * 120.00299 * 17.88147 * 19 17 16 21 21 Si 1.86802 * 119.99784 * 197.88427 * 19 17 16 22 22 H 1.48490 * 109.47297 * 89.99816 * 21 19 17 23 23 H 1.48503 * 109.47040 * 209.99990 * 21 19 17 24 24 H 1.48505 * 109.47074 * 329.99619 * 21 19 17 25 25 C 1.39047 * 120.03482 * 179.97438 * 12 10 9 26 26 H 1.09003 * 109.46795 * 299.30137 * 1 2 3 27 27 H 1.08997 * 109.46591 * 59.29788 * 1 2 3 28 28 H 1.08993 * 109.47240 * 179.30504 * 1 2 3 29 29 H 1.08995 * 110.37455 * 336.21528 * 4 2 1 30 30 H 1.09008 * 110.36734 * 98.54968 * 4 2 1 31 31 H 1.09001 * 110.37176 * 200.72952 * 6 5 4 32 32 H 1.09004 * 110.46853 * 78.43981 * 6 5 4 33 33 H 1.08002 * 119.82484 * 0.02562 * 13 12 10 34 34 H 1.08006 * 119.78540 * 180.26049 * 14 13 12 35 35 H 1.07995 * 119.97068 * 179.76541 * 15 14 13 36 36 H 0.97003 * 120.00599 * 180.02562 * 20 19 17 37 37 H 1.08001 * 120.20028 * 0.02562 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7798 -1.2188 5 8 3.2399 -1.4724 -0.7217 6 6 2.8757 -1.9414 0.5948 7 6 2.0714 -0.7798 1.2191 8 1 1.2490 -1.1652 1.8219 9 8 2.9380 0.0662 2.0202 10 6 2.9868 -0.1862 3.3425 11 8 2.3239 -1.0886 3.8134 12 6 3.8467 0.6347 4.2202 13 6 4.6152 1.6709 3.6773 14 6 5.4191 2.4463 4.4933 15 6 5.4802 2.2018 5.8477 16 6 4.7188 1.1607 6.4110 17 6 4.7799 0.9070 7.8012 18 1 5.0636 1.6959 8.4821 19 6 4.4730 -0.3661 8.2943 20 7 4.4728 -1.3970 7.4889 21 14 4.0633 -0.5935 10.1026 22 1 2.6004 -0.4353 10.3024 23 1 4.4783 -1.9515 10.5372 24 1 4.7856 0.4256 10.9057 25 6 3.8971 0.3751 5.5853 26 1 -0.3633 0.5030 0.8962 27 1 -0.3632 0.5247 -0.8836 28 1 -0.3633 -1.0275 -0.0125 29 1 1.3285 -1.4950 -1.5720 30 1 2.3465 -0.0914 -2.0179 31 1 3.7688 -2.1452 1.1855 32 1 2.2569 -2.8359 0.5231 33 1 4.5775 1.8686 2.6162 34 1 6.0051 3.2462 4.0654 35 1 6.1132 2.8092 6.4775 36 1 4.2597 -2.2795 7.8306 37 1 3.3093 -0.4263 6.0080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853192806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:50 Heat of formation + Delta-G solvation = -121.257732 kcal Electronic energy + Delta-G solvation = -21002.408495 eV Core-core repulsion = 17709.124840 eV Total energy + Delta-G solvation = -3293.283655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34767 -38.89883 -37.29996 -35.61692 -33.79250 -33.41185 -30.47840 -29.55456 -29.01550 -26.39269 -25.42053 -23.91915 -22.31127 -21.02362 -20.50907 -19.78042 -17.90793 -17.08796 -16.31849 -16.09031 -15.78896 -15.26539 -14.84136 -14.80385 -14.56242 -13.73993 -13.43380 -13.31314 -13.05170 -12.70537 -12.60526 -12.30212 -11.93624 -11.84479 -11.61363 -11.22479 -11.15134 -11.12102 -10.90053 -10.77231 -10.54787 -10.40297 -10.22327 -9.75604 -9.69969 -9.51141 -9.27304 -7.77937 -7.58786 -6.85802 -4.46807 1.93141 2.75293 3.04727 3.07975 3.11009 3.11362 3.53478 3.83830 3.87936 4.33515 4.54430 4.64719 4.77752 4.89406 5.17258 5.23700 5.30327 5.38428 5.51119 5.53029 5.62849 5.67946 5.85380 5.88064 6.01786 6.12023 6.38281 6.54430 6.67315 6.90738 6.92968 6.96399 7.14055 7.27985 7.65202 7.72343 7.87793 8.07147 8.41186 8.49949 8.73902 8.75940 10.09630 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.004311 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.702317 B = 6493.619056 C = 7025.449393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.101 0.899 4 C 0.050 3.950 5 O -0.369 6.369 6 C 0.034 3.966 7 C 0.055 3.945 8 H 0.101 0.899 9 O -0.341 6.341 10 C 0.510 3.490 11 O -0.518 6.518 12 C -0.116 4.116 13 C -0.193 4.193 14 C -0.103 4.103 15 C -0.201 4.201 16 C 0.095 3.905 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.074 3.926 20 N -0.787 5.787 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.089 4.089 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.285 0.715 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 0.575 -11.215 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 H 0.119 0.881 4 C -0.027 4.027 5 O -0.288 6.288 6 C -0.043 4.043 7 C -0.001 4.001 8 H 0.118 0.882 9 O -0.259 6.259 10 C 0.358 3.642 11 O -0.408 6.408 12 C -0.117 4.117 13 C -0.213 4.213 14 C -0.122 4.122 15 C -0.221 4.221 16 C 0.093 3.907 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.145 4.145 20 N -0.411 5.411 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.109 4.109 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.960 -0.011 -11.210 12.696 hybrid contribution -0.398 -0.325 0.890 1.028 sum -6.359 -0.336 -10.320 12.127 Atomic orbital electron populations 1.21805 0.93159 1.02365 1.02735 1.22656 0.96690 1.01925 0.93186 0.88116 1.23558 0.88102 0.94944 0.96085 1.89190 1.35161 1.73734 1.30692 1.23820 1.00767 0.95455 0.84239 1.24088 0.93328 0.90822 0.91832 0.88163 1.86734 1.62013 1.56605 1.20526 1.21970 0.79791 0.82167 0.80292 1.90748 1.43020 1.31555 1.75461 1.18826 1.01215 0.98806 0.92871 1.20576 1.03255 0.99181 0.98272 1.20517 0.98928 0.98692 0.94028 1.21192 1.03394 1.03447 0.94041 1.17540 0.89136 0.90550 0.93471 1.19585 1.40878 0.96281 0.92197 0.89893 1.25963 0.92507 0.95459 1.00614 1.69776 1.33342 1.00354 1.37677 0.86250 0.79883 0.78437 0.81848 1.19141 1.20199 1.18507 1.21663 0.98528 1.00724 0.89960 0.91768 0.91649 0.92199 0.91943 0.88657 0.88133 0.90823 0.87857 0.88489 0.88304 0.90399 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.95 37.16 0.33 -0.98 16 2 C -0.13 -1.47 3.52 -89.05 -0.31 -1.78 16 3 H 0.10 1.22 8.00 -51.93 -0.42 0.81 16 4 C 0.05 0.53 7.20 37.93 0.27 0.81 16 5 O -0.37 -5.34 11.65 -35.23 -0.41 -5.75 16 6 C 0.03 0.49 7.39 37.93 0.28 0.77 16 7 C 0.06 0.84 3.13 -25.16 -0.08 0.76 16 8 H 0.10 1.56 6.74 -51.93 -0.35 1.21 16 9 O -0.34 -6.52 9.11 -40.50 -0.37 -6.89 16 10 C 0.51 11.44 7.90 34.62 0.27 11.71 16 11 O -0.52 -12.43 15.58 -19.24 -0.30 -12.73 16 12 C -0.12 -2.80 5.87 -105.05 -0.62 -3.41 16 13 C -0.19 -4.28 9.62 -38.90 -0.37 -4.66 16 14 C -0.10 -2.24 10.01 -39.73 -0.40 -2.63 16 15 C -0.20 -4.73 9.78 -38.81 -0.38 -5.11 16 16 C 0.10 2.49 5.57 -106.87 -0.60 1.90 16 17 C -0.46 -11.91 9.05 -37.73 -0.34 -12.25 16 18 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 19 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 20 N -0.79 -20.52 10.96 55.55 0.61 -19.91 16 21 Si 0.91 18.47 29.60 -169.99 -5.03 13.44 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 25 C -0.09 -2.36 8.24 -38.43 -0.32 -2.68 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 30 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.10 1.59 8.09 -51.93 -0.42 1.17 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 34 H 0.10 1.78 8.06 -52.48 -0.42 1.35 16 35 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.14 3.81 5.74 -52.49 -0.30 3.50 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -28.94 316.62 -7.87 -36.82 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.80 Total: 6.08 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.34 Total: -15.82 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.61 Total: -19.91 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.08 Total: -25.38 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.94 -7.87 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853192806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.442 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds