Wall clock time and date at job start Mon Mar 30 2020 02:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.45851 * 2 1 4 4 C 1.54479 * 110.51044 * 237.38795 * 2 1 3 5 5 O 1.44649 * 104.69594 * 217.47477 * 4 2 1 6 6 C 1.44424 * 105.36740 * 40.35100 * 5 4 2 7 7 C 1.54477 * 104.80339 * 319.56447 * 6 5 4 8 8 H 1.08998 * 110.51383 * 142.62836 * 7 6 5 9 9 O 1.45206 * 110.50945 * 265.33234 * 7 6 5 10 10 C 1.34705 * 117.00335 * 264.64198 * 9 7 6 11 11 O 1.21470 * 119.99522 * 0.02562 * 10 9 7 12 12 C 1.47761 * 120.00397 * 180.02562 * 10 9 7 13 13 C 1.39973 * 120.02843 * 359.72106 * 12 10 9 14 14 C 1.38318 * 120.35137 * 179.78827 * 13 12 10 15 15 C 1.37761 * 120.41867 * 0.46990 * 14 13 12 16 16 C 1.40749 * 120.04953 * 359.78894 * 15 14 13 17 17 C 1.41443 * 120.17492 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99981 * 24.48675 * 17 16 15 19 19 C 1.39933 * 119.99956 * 204.48603 * 17 16 15 20 20 N 1.30822 * 120.00299 * 17.88147 * 19 17 16 21 21 Si 1.86802 * 119.99784 * 197.88427 * 19 17 16 22 22 H 1.48490 * 109.47297 * 89.99816 * 21 19 17 23 23 H 1.48503 * 109.47040 * 209.99990 * 21 19 17 24 24 H 1.48505 * 109.47074 * 329.99619 * 21 19 17 25 25 C 1.39047 * 120.03482 * 179.97438 * 12 10 9 26 26 H 1.09003 * 109.46795 * 299.30137 * 1 2 3 27 27 H 1.08997 * 109.46591 * 59.29788 * 1 2 3 28 28 H 1.08993 * 109.47240 * 179.30504 * 1 2 3 29 29 H 1.08995 * 110.37455 * 336.21528 * 4 2 1 30 30 H 1.09008 * 110.36734 * 98.54968 * 4 2 1 31 31 H 1.09001 * 110.37176 * 200.72952 * 6 5 4 32 32 H 1.09004 * 110.46853 * 78.43981 * 6 5 4 33 33 H 1.08002 * 119.82484 * 0.02562 * 13 12 10 34 34 H 1.08006 * 119.78540 * 180.26049 * 14 13 12 35 35 H 1.07995 * 119.97068 * 179.76541 * 15 14 13 36 36 H 0.97003 * 120.00599 * 180.02562 * 20 19 17 37 37 H 1.08001 * 120.20028 * 0.02562 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7798 -1.2188 5 8 3.2399 -1.4724 -0.7217 6 6 2.8757 -1.9414 0.5948 7 6 2.0714 -0.7798 1.2191 8 1 1.2490 -1.1652 1.8219 9 8 2.9380 0.0662 2.0202 10 6 2.9868 -0.1862 3.3425 11 8 2.3239 -1.0886 3.8134 12 6 3.8467 0.6347 4.2202 13 6 4.6152 1.6709 3.6773 14 6 5.4191 2.4463 4.4933 15 6 5.4802 2.2018 5.8477 16 6 4.7188 1.1607 6.4110 17 6 4.7799 0.9070 7.8012 18 1 5.0636 1.6959 8.4821 19 6 4.4730 -0.3661 8.2943 20 7 4.4728 -1.3970 7.4889 21 14 4.0633 -0.5935 10.1026 22 1 2.6004 -0.4353 10.3024 23 1 4.4783 -1.9515 10.5372 24 1 4.7856 0.4256 10.9057 25 6 3.8971 0.3751 5.5853 26 1 -0.3633 0.5030 0.8962 27 1 -0.3632 0.5247 -0.8836 28 1 -0.3633 -1.0275 -0.0125 29 1 1.3285 -1.4950 -1.5720 30 1 2.3465 -0.0914 -2.0179 31 1 3.7688 -2.1452 1.1855 32 1 2.2569 -2.8359 0.5231 33 1 4.5775 1.8686 2.6162 34 1 6.0051 3.2462 4.0654 35 1 6.1132 2.8092 6.4775 36 1 4.2597 -2.2795 7.8306 37 1 3.3093 -0.4263 6.0080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853192806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:49 Heat of formation + Delta-G solvation = -136.990072 kcal Electronic energy + Delta-G solvation = -21003.090700 eV Core-core repulsion = 17709.124840 eV Total energy + Delta-G solvation = -3293.965860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80718 -40.25470 -39.07131 -37.23359 -35.64135 -34.40452 -32.27928 -31.39817 -30.22064 -27.37867 -27.16159 -25.48219 -23.62872 -22.87017 -21.58367 -21.46328 -19.68415 -18.55078 -17.90732 -17.43746 -17.21828 -16.68486 -16.49522 -16.21215 -16.06232 -15.26072 -15.05255 -14.53387 -14.35689 -14.25213 -13.81467 -13.67666 -13.51089 -13.04668 -12.93196 -12.88403 -12.84251 -12.57521 -12.24877 -12.07439 -11.99096 -11.96240 -11.57823 -11.55880 -11.29345 -11.11601 -10.78088 -9.64889 -9.47360 -8.70594 -6.42034 0.08775 0.94254 1.37324 1.45275 1.51770 1.59871 1.75846 2.18266 2.69503 2.82791 3.29859 3.56654 3.61092 3.69266 3.90365 3.99344 4.21544 4.31770 4.38331 4.44331 4.58294 4.60156 4.65198 4.74757 4.83110 4.90666 5.02276 5.06309 5.10652 5.18956 5.25968 5.28736 5.42058 5.68154 5.78938 5.86953 5.98637 6.20321 6.50617 6.76401 6.84169 6.86443 8.27126 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.004311 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.702317 B = 6493.619056 C = 7025.449393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 H 0.096 0.904 4 C 0.049 3.951 5 O -0.390 6.390 6 C 0.036 3.964 7 C 0.041 3.959 8 H 0.095 0.905 9 O -0.339 6.339 10 C 0.514 3.486 11 O -0.543 6.543 12 C -0.130 4.130 13 C -0.183 4.183 14 C -0.098 4.098 15 C -0.204 4.204 16 C 0.067 3.933 17 C -0.494 4.494 18 H 0.089 0.911 19 C 0.031 3.969 20 N -0.827 5.827 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.250 1.250 25 C -0.123 4.123 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.288 0.712 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 1.608 -12.700 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 H 0.114 0.886 4 C -0.027 4.027 5 O -0.309 6.309 6 C -0.041 4.041 7 C -0.015 4.015 8 H 0.113 0.887 9 O -0.256 6.256 10 C 0.362 3.638 11 O -0.435 6.435 12 C -0.131 4.131 13 C -0.203 4.203 14 C -0.116 4.116 15 C -0.223 4.223 16 C 0.064 3.936 17 C -0.523 4.523 18 H 0.107 0.893 19 C -0.184 4.184 20 N -0.452 5.452 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.173 1.173 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.258 1.047 -12.731 14.224 hybrid contribution -0.294 -0.581 1.132 1.305 sum -6.552 0.466 -11.599 13.330 Atomic orbital electron populations 1.21813 0.91090 1.03333 1.03446 1.22720 0.98290 1.01197 0.91601 0.88568 1.23837 0.87529 0.95569 0.95789 1.89166 1.37184 1.74270 1.30287 1.23783 1.00010 0.96032 0.84288 1.24584 0.92768 0.91698 0.92408 0.88731 1.86687 1.62730 1.57293 1.18908 1.21733 0.79181 0.81494 0.81351 1.90722 1.43984 1.32522 1.76279 1.19091 1.01810 0.99626 0.92590 1.20938 1.01845 0.97855 0.99618 1.20960 0.98372 0.99119 0.93143 1.21509 1.02828 1.02597 0.95384 1.17902 0.89871 0.91684 0.94093 1.19888 1.42654 0.97143 0.92615 0.89341 1.26866 0.91621 0.94718 1.05203 1.69867 1.34558 1.00917 1.39869 0.85157 0.79498 0.78761 0.76076 1.18999 1.19455 1.17312 1.21479 1.00019 1.01463 0.91321 0.92946 0.88995 0.91212 0.89389 0.86523 0.90421 0.88368 0.85324 0.84136 0.86556 0.90100 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.95 71.98 0.64 -1.56 16 2 C -0.12 -2.53 3.52 -9.78 -0.03 -2.56 16 3 H 0.10 2.14 8.00 -2.39 -0.02 2.12 16 4 C 0.05 0.89 7.20 72.49 0.52 1.41 16 5 O -0.39 -10.60 11.65 -148.98 -1.74 -12.34 16 6 C 0.04 1.01 7.39 72.48 0.54 1.55 16 7 C 0.04 1.21 3.13 31.61 0.10 1.31 16 8 H 0.09 2.94 6.74 -2.39 -0.02 2.92 16 9 O -0.34 -12.94 9.11 -56.14 -0.51 -13.45 16 10 C 0.51 23.65 7.90 70.34 0.56 24.21 16 11 O -0.54 -27.21 15.58 19.94 0.31 -26.90 16 12 C -0.13 -6.40 5.87 -20.14 -0.12 -6.52 16 13 C -0.18 -7.88 9.62 22.71 0.22 -7.66 16 14 C -0.10 -4.02 10.01 22.18 0.22 -3.80 16 15 C -0.20 -9.45 9.78 22.77 0.22 -9.23 16 16 C 0.07 3.58 5.57 -21.32 -0.12 3.47 16 17 C -0.49 -26.29 9.05 23.47 0.21 -26.08 16 18 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 19 C 0.03 1.58 5.14 85.25 0.44 2.02 16 20 N -0.83 -45.10 10.96 21.82 0.24 -44.87 16 21 Si 0.98 38.57 29.60 68.60 2.03 40.60 16 22 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 25 C -0.12 -6.79 8.24 23.02 0.19 -6.60 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.97 8.12 -2.39 -0.02 0.95 16 29 H 0.09 1.19 7.85 -2.39 -0.02 1.17 16 30 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 32 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.13 4.84 7.59 -2.91 -0.02 4.82 16 34 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 36 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 37 H 0.11 6.43 5.74 -2.91 -0.02 6.41 16 Total: -1.00 -65.37 316.62 4.99 -60.37 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 1.07 Total: 26.62 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 3.59 Total: -30.05 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.24 Total: -44.87 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -1.94 Total: -52.68 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -65.37 4.99 -60.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853192806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.615 kcal (2) G-P(sol) polarization free energy of solvation -65.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds