Wall clock time and date at job start Mon Mar 30 2020 01:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99808 * 2 1 4 4 H 1.48502 * 109.47434 * 270.00603 * 3 2 1 5 5 H 1.48503 * 109.46772 * 30.00406 * 3 2 1 6 6 H 1.48498 * 109.47183 * 149.99765 * 3 2 1 7 7 C 1.37870 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00023 * 178.42487 * 7 2 1 9 9 C 1.50704 * 119.99989 * 358.42598 * 7 2 1 10 10 C 1.53002 * 115.54769 * 84.97323 * 9 7 2 11 11 O 1.45199 * 109.47172 * 39.89709 * 10 9 7 12 12 C 1.34230 * 116.99884 * 180.02562 * 11 10 9 13 13 O 1.20828 * 120.00023 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00105 * 179.97438 * 12 11 10 15 15 H 1.09003 * 115.55049 * 34.27868 * 14 12 11 16 16 C 1.52997 * 117.49936 * 248.60737 * 14 12 11 17 17 C 1.53002 * 117.49877 * 179.97438 * 14 12 11 18 18 H 1.08995 * 117.49856 * 0.02562 * 17 14 12 19 19 C 1.50698 * 117.50016 * 214.97874 * 17 14 12 20 20 C 1.34517 * 125.78914 * 120.00217 * 19 17 14 21 21 C 1.41381 * 106.83849 * 180.02562 * 20 19 17 22 22 C 1.34512 * 106.84610 * 359.97438 * 21 20 19 23 23 O 1.34302 * 125.78875 * 299.69660 * 19 17 14 24 24 C 1.52998 * 117.51639 * 230.67195 * 9 7 2 25 25 C 1.52998 * 117.49856 * 299.30160 * 9 7 2 26 26 H 0.96990 * 120.00134 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46767 * 279.89471 * 10 9 7 28 28 H 1.09002 * 109.46950 * 159.89502 * 10 9 7 29 29 H 1.09004 * 117.49813 * 359.97438 * 16 14 12 30 30 H 1.08999 * 117.49947 * 145.02283 * 16 14 12 31 31 H 1.07993 * 126.58024 * 359.96063 * 20 19 17 32 32 H 1.08002 * 126.57563 * 179.97438 * 21 20 19 33 33 H 1.08001 * 125.79501 * 179.97438 * 22 21 20 34 34 H 1.08997 * 117.49662 * 214.96822 * 24 9 7 35 35 H 1.08998 * 117.49871 * 359.97438 * 24 9 7 36 36 H 1.09001 * 117.49522 * 359.97438 * 25 9 7 37 37 H 1.08998 * 117.49904 * 144.99542 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0467 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0844 -1.1940 -0.0262 9 6 1.2516 -2.4989 0.0347 10 6 0.7845 -3.0281 -1.3227 11 8 1.8206 -2.7995 -2.3139 12 6 1.5662 -3.2084 -3.5669 13 8 0.5128 -3.7401 -3.8266 14 6 2.5944 -3.0043 -4.6495 15 1 3.6340 -3.0856 -4.3320 16 6 2.2692 -1.9935 -5.7511 17 6 2.2449 -3.4926 -6.0568 18 1 1.2712 -3.9612 -6.1996 19 6 3.3644 -4.0494 -6.8981 20 6 3.4251 -5.2952 -7.4020 21 6 4.6391 -5.3875 -8.1208 22 6 5.2473 -4.1925 -8.0137 23 8 4.4679 -3.3842 -7.2768 24 6 1.6680 -3.5270 1.0885 25 6 0.3517 -2.7628 1.2436 26 1 -0.4850 0.8399 0.0004 27 1 -0.1255 -2.5080 -1.6218 28 1 0.5839 -4.0968 -1.2466 29 1 1.3114 -1.4764 -5.6929 30 1 3.0949 -1.4101 -6.1585 31 1 2.6885 -6.0754 -7.2799 32 1 5.0073 -6.2517 -8.6536 33 1 6.1991 -3.9269 -8.4495 34 1 1.6091 -4.5804 0.8147 35 1 2.4871 -3.2599 1.7562 36 1 0.3046 -1.9927 2.0136 37 1 -0.5732 -3.3133 1.0718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860441337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:17 Heat of formation + Delta-G solvation = -18.535601 kcal Electronic energy + Delta-G solvation = -20610.145493 eV Core-core repulsion = 17321.316204 eV Total energy + Delta-G solvation = -3288.829289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.71217 -39.97590 -37.42376 -36.32616 -35.12331 -33.11832 -31.93472 -29.70377 -27.27287 -25.41216 -24.21086 -23.26682 -21.80528 -21.17352 -20.38247 -19.74738 -19.25493 -17.83984 -16.95660 -16.60454 -16.03617 -15.68060 -15.43651 -14.98522 -14.57357 -14.02070 -13.50843 -13.14928 -12.94667 -12.90262 -12.70027 -12.37552 -12.02080 -11.86072 -11.57567 -11.10628 -10.95215 -10.88013 -10.61223 -10.51176 -10.33170 -10.04072 -10.02733 -9.80999 -9.54160 -8.91944 -8.49736 -8.44272 -8.14486 -6.04155 -4.09055 1.50614 2.39882 2.62240 2.77529 3.30023 3.30213 3.36811 3.40331 3.81940 4.40078 4.42762 4.57819 4.74407 4.89251 4.95529 5.18241 5.20889 5.26110 5.41872 5.56780 5.68519 5.77422 5.90369 5.93556 5.97119 5.98849 6.19207 6.30962 6.35074 6.47130 6.66436 6.75234 7.00811 7.01110 7.14603 7.35247 7.48624 7.88445 8.32488 8.48886 8.91438 9.56291 11.05498 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021587 B = 0.004145 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.779472 B = 6754.181420 C = 7421.809841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.035 3.965 10 C 0.117 3.883 11 O -0.317 6.317 12 C 0.485 3.515 13 O -0.526 6.526 14 C -0.144 4.144 15 H 0.137 0.863 16 C -0.133 4.133 17 C -0.055 4.055 18 H 0.149 0.851 19 C 0.022 3.978 20 C -0.202 4.202 21 C -0.214 4.214 22 C -0.043 4.043 23 O -0.174 6.174 24 C -0.210 4.210 25 C -0.144 4.144 26 H 0.260 0.740 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.203 0.797 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.910 -7.204 -13.660 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.034 3.966 10 C 0.043 3.957 11 O -0.230 6.230 12 C 0.328 3.672 13 O -0.417 6.417 14 C -0.163 4.163 15 H 0.155 0.845 16 C -0.170 4.170 17 C -0.073 4.073 18 H 0.166 0.834 19 C -0.028 4.028 20 C -0.221 4.221 21 C -0.233 4.233 22 C -0.110 4.110 23 O -0.070 6.070 24 C -0.247 4.247 25 C -0.182 4.182 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.219 0.781 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.486 -6.916 -13.584 16.566 hybrid contribution 0.318 0.552 -0.051 0.640 sum 6.804 -6.364 -13.635 16.514 Atomic orbital electron populations 1.69993 1.05870 1.26546 1.49713 1.24980 0.94844 0.98987 0.94568 0.86589 0.79905 0.83308 0.78195 1.20575 1.21282 1.19791 1.20303 0.92518 0.88039 1.50997 0.91939 1.18780 0.99112 0.94313 0.84367 1.22778 0.88474 0.97210 0.87200 1.86575 1.46900 1.72569 1.17004 1.22279 0.85945 0.74963 0.83988 1.90599 1.26493 1.41377 1.83262 1.21837 1.00155 1.07089 0.87258 0.84512 1.23142 1.04951 0.90923 0.97948 1.20594 0.95743 0.98321 0.92638 0.83361 1.21328 0.88266 0.91680 1.01476 1.21555 1.00110 0.97151 1.03296 1.21832 0.96718 0.99223 1.05513 1.24022 0.97650 0.90136 0.99238 1.83991 1.27488 1.40697 1.54833 1.23121 0.99388 0.95578 1.06607 1.22522 0.91644 1.01321 1.02664 0.93023 0.91180 0.94112 0.86891 0.86705 0.83283 0.83432 0.78075 0.91575 0.90039 0.89327 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.89 12.80 55.43 0.71 -24.18 16 2 C 0.07 1.88 5.41 -17.82 -0.10 1.78 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.48 -13.06 8.24 -34.44 -0.28 -13.35 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.03 0.86 1.81 -155.66 -0.28 0.58 16 10 C 0.12 2.76 5.53 37.16 0.21 2.97 16 11 O -0.32 -7.19 9.61 -39.26 -0.38 -7.57 16 12 C 0.48 9.53 7.74 36.01 0.28 9.80 16 13 O -0.53 -11.14 16.01 -18.75 -0.30 -11.44 16 14 C -0.14 -2.20 6.00 -91.77 -0.55 -2.75 16 15 H 0.14 1.95 8.14 -51.93 -0.42 1.53 16 16 C -0.13 -1.72 9.87 -26.72 -0.26 -1.98 16 17 C -0.06 -0.72 5.75 -91.76 -0.53 -1.24 16 18 H 0.15 1.91 7.67 -51.93 -0.40 1.51 16 19 C 0.02 0.28 6.80 -35.62 -0.24 0.04 16 20 C -0.20 -2.31 10.81 -39.70 -0.43 -2.74 16 21 C -0.21 -2.09 10.91 -39.70 -0.43 -2.53 16 22 C -0.04 -0.41 12.09 29.42 0.36 -0.05 16 23 O -0.17 -2.11 10.36 5.69 0.06 -2.05 16 24 C -0.21 -4.55 9.88 -26.73 -0.26 -4.82 16 25 C -0.14 -3.34 9.33 -26.73 -0.25 -3.59 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.07 1.78 8.13 -51.93 -0.42 1.36 16 28 H 0.04 0.89 7.94 -51.93 -0.41 0.48 16 29 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.11 1.31 7.96 -51.93 -0.41 0.90 16 31 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.20 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -30.69 330.61 -7.72 -38.41 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.99 Total: 3.67 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.78 Total: -17.88 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.71 Total: -24.18 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.62 Total: -21.05 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.69 -7.72 -38.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860441337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.879 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds