Wall clock time and date at job start Mon Mar 30 2020 01:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99808 * 2 1 4 4 H 1.48502 * 109.47434 * 270.00603 * 3 2 1 5 5 H 1.48503 * 109.46772 * 30.00406 * 3 2 1 6 6 H 1.48498 * 109.47183 * 149.99765 * 3 2 1 7 7 C 1.37870 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00023 * 178.42487 * 7 2 1 9 9 C 1.50704 * 119.99989 * 358.42598 * 7 2 1 10 10 C 1.53002 * 115.54769 * 84.97323 * 9 7 2 11 11 O 1.45199 * 109.47172 * 39.89709 * 10 9 7 12 12 C 1.34230 * 116.99884 * 180.02562 * 11 10 9 13 13 O 1.20828 * 120.00023 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00105 * 179.97438 * 12 11 10 15 15 H 1.09003 * 115.55049 * 34.27868 * 14 12 11 16 16 C 1.52997 * 117.49936 * 248.60737 * 14 12 11 17 17 C 1.53002 * 117.49877 * 179.97438 * 14 12 11 18 18 H 1.08995 * 117.49856 * 0.02562 * 17 14 12 19 19 C 1.50698 * 117.50016 * 214.97874 * 17 14 12 20 20 C 1.34517 * 125.78914 * 120.00217 * 19 17 14 21 21 C 1.41381 * 106.83849 * 180.02562 * 20 19 17 22 22 C 1.34512 * 106.84610 * 359.97438 * 21 20 19 23 23 O 1.34302 * 125.78875 * 299.69660 * 19 17 14 24 24 C 1.52998 * 117.51639 * 230.67195 * 9 7 2 25 25 C 1.52998 * 117.49856 * 299.30160 * 9 7 2 26 26 H 0.96990 * 120.00134 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46767 * 279.89471 * 10 9 7 28 28 H 1.09002 * 109.46950 * 159.89502 * 10 9 7 29 29 H 1.09004 * 117.49813 * 359.97438 * 16 14 12 30 30 H 1.08999 * 117.49947 * 145.02283 * 16 14 12 31 31 H 1.07993 * 126.58024 * 359.96063 * 20 19 17 32 32 H 1.08002 * 126.57563 * 179.97438 * 21 20 19 33 33 H 1.08001 * 125.79501 * 179.97438 * 22 21 20 34 34 H 1.08997 * 117.49662 * 214.96822 * 24 9 7 35 35 H 1.08998 * 117.49871 * 359.97438 * 24 9 7 36 36 H 1.09001 * 117.49522 * 359.97438 * 25 9 7 37 37 H 1.08998 * 117.49904 * 144.99542 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0467 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0844 -1.1940 -0.0262 9 6 1.2516 -2.4989 0.0347 10 6 0.7845 -3.0281 -1.3227 11 8 1.8206 -2.7995 -2.3139 12 6 1.5662 -3.2084 -3.5669 13 8 0.5128 -3.7401 -3.8266 14 6 2.5944 -3.0043 -4.6495 15 1 3.6340 -3.0856 -4.3320 16 6 2.2692 -1.9935 -5.7511 17 6 2.2449 -3.4926 -6.0568 18 1 1.2712 -3.9612 -6.1996 19 6 3.3644 -4.0494 -6.8981 20 6 3.4251 -5.2952 -7.4020 21 6 4.6391 -5.3875 -8.1208 22 6 5.2473 -4.1925 -8.0137 23 8 4.4679 -3.3842 -7.2768 24 6 1.6680 -3.5270 1.0885 25 6 0.3517 -2.7628 1.2436 26 1 -0.4850 0.8399 0.0004 27 1 -0.1255 -2.5080 -1.6218 28 1 0.5839 -4.0968 -1.2466 29 1 1.3114 -1.4764 -5.6929 30 1 3.0949 -1.4101 -6.1585 31 1 2.6885 -6.0754 -7.2799 32 1 5.0073 -6.2517 -8.6536 33 1 6.1991 -3.9269 -8.4495 34 1 1.6091 -4.5804 0.8147 35 1 2.4871 -3.2599 1.7562 36 1 0.3046 -1.9927 2.0136 37 1 -0.5732 -3.3133 1.0718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860441337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:16 Heat of formation + Delta-G solvation = -33.611871 kcal Electronic energy + Delta-G solvation = -20610.799249 eV Core-core repulsion = 17321.316204 eV Total energy + Delta-G solvation = -3289.483045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.53241 -41.54193 -38.95366 -37.86369 -36.80054 -33.99545 -33.92644 -30.58590 -28.99180 -27.41787 -25.63851 -24.21681 -22.97605 -22.62143 -21.55205 -21.21268 -20.87951 -19.05987 -18.38897 -18.05679 -17.38194 -17.25568 -16.83352 -16.51613 -15.95355 -15.72776 -14.94390 -14.46340 -14.36479 -14.03947 -13.74192 -13.64213 -13.46819 -13.32645 -12.99380 -12.89230 -12.83943 -12.37093 -12.17296 -12.12667 -11.79784 -11.64056 -11.61560 -11.34249 -10.87563 -10.82572 -10.46952 -10.02164 -9.33063 -8.10733 -6.21294 0.62447 1.09491 1.42981 1.44042 1.53787 1.59412 1.79348 2.07359 2.44537 2.70883 3.18763 3.34487 3.41746 3.49479 3.65885 3.93892 4.07776 4.15113 4.16367 4.34167 4.35672 4.46205 4.56631 4.63023 4.77373 4.81343 4.88688 4.96680 4.98167 5.03898 5.15901 5.18472 5.36327 5.58587 5.60265 5.69276 5.77083 6.19817 6.36074 6.78188 6.84801 7.46796 8.98352 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021587 B = 0.004145 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.779472 B = 6754.181420 C = 7421.809841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.494 4.494 8 H 0.054 0.946 9 C 0.000 4.000 10 C 0.127 3.873 11 O -0.335 6.335 12 C 0.482 3.518 13 O -0.546 6.546 14 C -0.160 4.160 15 H 0.146 0.854 16 C -0.122 4.122 17 C -0.036 4.036 18 H 0.146 0.854 19 C -0.005 4.005 20 C -0.206 4.206 21 C -0.226 4.226 22 C -0.035 4.035 23 O -0.188 6.188 24 C -0.183 4.183 25 C -0.145 4.145 26 H 0.260 0.740 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.241 0.759 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -7.648 -14.965 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.531 4.531 8 H 0.072 0.928 9 C 0.000 4.000 10 C 0.053 3.947 11 O -0.249 6.249 12 C 0.327 3.673 13 O -0.439 6.439 14 C -0.179 4.179 15 H 0.164 0.836 16 C -0.159 4.159 17 C -0.054 4.054 18 H 0.164 0.836 19 C -0.055 4.055 20 C -0.225 4.225 21 C -0.245 4.245 22 C -0.102 4.102 23 O -0.085 6.085 24 C -0.220 4.220 25 C -0.183 4.183 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.128 0.872 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.189 0.811 33 H 0.257 0.743 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.264 -7.372 -14.892 18.559 hybrid contribution -0.190 0.613 0.278 0.699 sum 8.074 -6.759 -14.614 18.013 Atomic orbital electron populations 1.70100 1.07075 1.27119 1.50712 1.25668 0.95582 1.01984 0.94366 0.85673 0.78902 0.79578 0.78234 1.20229 1.20981 1.19121 1.20529 0.92315 0.89523 1.50775 0.92828 1.18921 1.00679 0.94943 0.85483 1.22499 0.87619 0.97460 0.87141 1.86572 1.46713 1.73375 1.18268 1.23085 0.86634 0.73911 0.83663 1.90574 1.27712 1.42253 1.83311 1.21868 0.99110 1.10087 0.86848 0.83624 1.23271 1.05454 0.91227 0.95958 1.20502 0.96051 0.98203 0.90630 0.83638 1.21203 0.88902 0.92318 1.03062 1.21876 1.00923 0.96910 1.02774 1.22182 0.96136 1.00430 1.05738 1.24875 0.98152 0.89642 0.97524 1.83977 1.27604 1.41453 1.55435 1.23136 0.98267 0.96274 1.04293 1.22440 0.92974 1.01423 1.01435 0.93153 0.94137 0.92626 0.87151 0.84813 0.82582 0.81052 0.74299 0.88897 0.89654 0.91245 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.20 12.80 21.45 0.27 -51.93 16 2 C 0.02 1.31 5.41 84.65 0.46 1.76 16 3 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.49 -27.06 8.24 25.60 0.21 -26.85 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.00 0.01 1.81 -52.93 -0.10 -0.09 16 10 C 0.13 6.08 5.53 71.98 0.40 6.47 16 11 O -0.33 -15.43 9.61 -51.42 -0.49 -15.93 16 12 C 0.48 19.17 7.74 71.24 0.55 19.72 16 13 O -0.55 -23.52 16.01 21.96 0.35 -23.17 16 14 C -0.16 -4.82 6.00 -11.54 -0.07 -4.89 16 15 H 0.15 4.07 8.14 -2.39 -0.02 4.05 16 16 C -0.12 -3.06 9.87 30.60 0.30 -2.76 16 17 C -0.04 -0.91 5.75 -11.53 -0.07 -0.98 16 18 H 0.15 3.72 7.67 -2.39 -0.02 3.71 16 19 C -0.01 -0.13 6.80 24.83 0.17 0.04 16 20 C -0.21 -4.36 10.81 22.19 0.24 -4.12 16 21 C -0.23 -3.81 10.91 22.19 0.24 -3.57 16 22 C -0.04 -0.56 12.09 66.97 0.81 0.25 16 23 O -0.19 -4.15 10.36 -2.57 -0.03 -4.18 16 24 C -0.18 -7.70 9.88 30.59 0.30 -7.40 16 25 C -0.15 -6.73 9.33 30.59 0.29 -6.44 16 26 H 0.26 14.23 8.31 -92.72 -0.77 13.46 16 27 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 28 H 0.06 2.43 7.94 -2.39 -0.02 2.42 16 29 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 30 H 0.13 2.83 7.96 -2.39 -0.02 2.81 16 31 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.09 3.41 8.08 -2.39 -0.02 3.39 16 35 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -66.06 330.61 6.93 -59.13 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.07 Total: 19.53 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 3.74 Total: -28.85 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.27 Total: -51.93 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.17 Total: -43.28 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -66.06 6.93 -59.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860441337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.519 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds