Wall clock time and date at job start Mon Mar 30 2020 01:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99873 * 2 1 4 4 H 1.48502 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47054 * 299.99934 * 3 2 1 6 6 H 1.48493 * 109.47271 * 59.99766 * 3 2 1 7 7 C 1.37868 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00072 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00034 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47139 * 180.02562 * 11 10 9 13 13 C 1.35374 * 126.73342 * 94.99753 * 12 11 10 14 14 N 1.36102 * 106.05225 * 180.02562 * 13 12 11 15 15 C 1.40302 * 125.94476 * 180.02562 * 14 13 12 16 16 C 1.38819 * 120.03734 * 359.71626 * 15 14 13 17 17 C 1.38107 * 119.95889 * 179.72134 * 16 15 14 18 18 C 1.38491 * 120.03603 * 0.56266 * 17 16 15 19 19 F 1.35099 * 119.95728 * 179.74082 * 18 17 16 20 20 C 1.38478 * 120.07971 * 359.71571 * 18 17 16 21 21 C 1.38102 * 120.04465 * 0.02562 * 20 18 17 22 22 N 1.28730 * 108.11424 * 359.97438 * 14 13 12 23 23 N 1.28608 * 110.23626 * 0.02562 * 22 14 13 24 24 H 0.97003 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46770 * 59.99576 * 9 7 2 26 26 H 1.08999 * 109.46542 * 299.99681 * 9 7 2 27 27 H 1.00907 * 110.99839 * 303.95050 * 10 9 7 28 28 H 1.08997 * 109.47154 * 60.00039 * 11 10 9 29 29 H 1.09005 * 109.46835 * 299.99740 * 11 10 9 30 30 H 1.07994 * 126.97586 * 0.05783 * 13 12 11 31 31 H 1.08003 * 120.01753 * 0.02562 * 16 15 14 32 32 H 1.07994 * 119.98443 * 180.27861 * 17 16 15 33 33 H 1.08000 * 119.97806 * 179.97438 * 20 18 17 34 34 H 1.07994 * 120.02318 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5149 -6.0259 0.0031 13 6 2.9855 -6.6900 1.0849 14 7 3.8707 -7.6071 0.6078 15 6 4.6043 -8.5219 1.3781 16 6 4.4621 -8.5390 2.7588 17 6 5.1807 -9.4441 3.5150 18 6 6.0514 -10.3265 2.8975 19 9 6.7575 -11.2077 3.6393 20 6 6.1987 -10.3069 1.5208 21 6 5.4778 -9.4069 0.7609 22 7 3.9170 -7.4899 -0.6733 23 7 3.1218 -6.5575 -1.0638 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.8411 -3.5489 -0.7792 28 1 0.8815 -4.9816 -0.8894 29 1 0.8795 -4.9813 0.8906 30 1 2.7133 -6.5257 2.1170 31 1 3.7863 -7.8482 3.2410 32 1 5.0671 -9.4607 4.5888 33 1 6.8785 -10.9955 1.0410 34 1 5.5927 -9.3922 -0.3128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862351226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:46 Heat of formation + Delta-G solvation = 86.854353 kcal Electronic energy + Delta-G solvation = -19427.122260 eV Core-core repulsion = 16083.988220 eV Total energy + Delta-G solvation = -3343.134041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.40598 -43.44599 -39.60134 -35.76278 -34.42665 -32.69346 -32.01165 -30.92015 -29.80460 -27.36916 -24.81879 -24.44182 -23.50679 -21.71106 -21.49491 -20.77345 -18.71325 -17.94536 -16.72460 -16.60896 -16.38186 -16.04348 -15.61458 -14.89209 -14.69173 -14.43635 -14.16552 -13.87060 -13.78024 -13.51708 -13.07738 -12.94659 -12.47427 -11.95587 -11.63190 -11.41420 -11.20213 -10.96456 -10.87025 -10.67350 -10.65141 -10.00411 -9.80549 -9.30410 -9.15593 -8.79493 -8.49138 -7.36283 -6.04172 -4.05880 0.12847 0.56095 1.72482 2.06874 2.56477 3.02290 3.31401 3.38640 3.44215 3.65854 3.95721 4.14990 4.29927 4.43782 4.52041 4.56763 4.91537 5.02258 5.14765 5.21401 5.31848 5.32217 5.46712 5.50567 5.54220 5.72693 5.98448 6.09017 6.20235 6.27580 6.62975 7.18567 7.39510 7.76300 8.09262 8.33246 8.44938 8.55687 9.03189 9.59089 11.07003 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.032863 B = 0.002806 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.830064 B = 9976.685021 C =10319.314394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.685 5.685 11 C 0.139 3.861 12 C 0.010 3.990 13 C -0.035 4.035 14 N -0.253 5.253 15 C 0.125 3.875 16 C -0.090 4.090 17 C -0.130 4.130 18 C 0.102 3.898 19 F -0.134 7.134 20 C -0.133 4.133 21 C -0.076 4.076 22 N -0.086 5.086 23 N -0.250 5.250 24 H 0.261 0.739 25 H -0.010 1.010 26 H 0.030 0.970 27 H 0.334 0.666 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.195 0.805 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 -22.228 7.108 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.317 5.317 11 C 0.007 3.993 12 C -0.126 4.126 13 C -0.183 4.183 14 N -0.041 5.041 15 C 0.033 3.967 16 C -0.111 4.111 17 C -0.150 4.150 18 C 0.082 3.918 19 F -0.112 7.112 20 C -0.152 4.152 21 C -0.096 4.096 22 N -0.064 5.064 23 N -0.119 5.119 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.048 0.952 27 H 0.151 0.849 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.212 0.788 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.046 -22.589 6.474 25.556 hybrid contribution -0.230 1.110 0.323 1.179 sum 9.817 -21.479 6.797 24.574 Atomic orbital electron populations 1.69970 1.06059 1.26725 1.50983 1.24980 0.94887 0.99373 0.95322 0.86422 0.80081 0.83291 0.77507 1.19658 1.21053 1.21001 1.21200 0.93583 0.90131 1.50258 0.91907 1.19598 0.90553 0.87086 0.96061 1.60776 1.21087 1.00339 1.49475 1.20182 0.91232 0.86297 1.01574 1.22240 1.01838 1.00250 0.88310 1.23540 0.97333 0.94951 1.02432 1.44573 1.28651 1.24434 1.06453 1.17688 0.96331 0.92649 0.90051 1.20829 1.00249 0.99409 0.90628 1.21012 0.96900 0.95545 1.01521 1.17792 0.94023 0.90650 0.89369 1.91537 1.76567 1.66475 1.76625 1.21078 1.01627 1.00710 0.91809 1.20859 0.93836 0.93083 1.01807 1.78297 1.19403 1.16961 0.91696 1.75071 1.05915 1.04627 1.26244 0.92935 0.99197 0.95153 0.84886 0.93904 0.89702 0.78802 0.83410 0.83230 0.83330 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.54 9.32 -34.44 -0.32 -14.86 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.00 5.44 -4.98 -0.03 4.98 16 10 N -0.69 -14.79 6.48 -116.34 -0.75 -15.54 16 11 C 0.14 2.45 6.25 -4.97 -0.03 2.42 16 12 C 0.01 0.16 6.76 -82.77 -0.56 -0.40 16 13 C -0.04 -0.46 10.85 -16.68 -0.18 -0.65 16 14 N -0.25 -3.32 3.56 -10.46 -0.04 -3.35 16 15 C 0.12 1.25 6.68 -83.55 -0.56 0.69 16 16 C -0.09 -0.68 9.45 -39.41 -0.37 -1.05 16 17 C -0.13 -0.85 10.02 -39.54 -0.40 -1.24 16 18 C 0.10 0.75 7.30 -39.40 -0.29 0.46 16 19 F -0.13 -1.07 17.27 2.25 0.04 -1.03 16 20 C -0.13 -0.92 10.02 -39.54 -0.40 -1.32 16 21 C -0.08 -0.65 9.62 -39.42 -0.38 -1.03 16 22 N -0.09 -1.35 12.41 60.35 0.75 -0.60 16 23 N -0.25 -4.42 12.39 33.29 0.41 -4.01 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H -0.01 -0.27 8.14 -51.93 -0.42 -0.69 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.33 7.32 8.71 -39.29 -0.34 6.97 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.20 1.82 7.10 -52.49 -0.37 1.45 16 31 H 0.15 0.84 6.77 -52.48 -0.36 0.48 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.15 1.29 7.69 -52.49 -0.40 0.89 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -32.48 308.49 -6.39 -38.87 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -3.56 Total: 0.78 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.61 Total: -10.52 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 1.11 Total: -49.43 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.48 -6.39 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862351226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.720 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds