Wall clock time and date at job start Mon Mar 30 2020 01:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99873 * 2 1 4 4 H 1.48502 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47054 * 299.99934 * 3 2 1 6 6 H 1.48493 * 109.47271 * 59.99766 * 3 2 1 7 7 C 1.37868 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00072 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00034 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47139 * 180.02562 * 11 10 9 13 13 C 1.35374 * 126.73342 * 94.99753 * 12 11 10 14 14 N 1.36102 * 106.05225 * 180.02562 * 13 12 11 15 15 C 1.40302 * 125.94476 * 180.02562 * 14 13 12 16 16 C 1.38819 * 120.03734 * 359.71626 * 15 14 13 17 17 C 1.38107 * 119.95889 * 179.72134 * 16 15 14 18 18 C 1.38491 * 120.03603 * 0.56266 * 17 16 15 19 19 F 1.35099 * 119.95728 * 179.74082 * 18 17 16 20 20 C 1.38478 * 120.07971 * 359.71571 * 18 17 16 21 21 C 1.38102 * 120.04465 * 0.02562 * 20 18 17 22 22 N 1.28730 * 108.11424 * 359.97438 * 14 13 12 23 23 N 1.28608 * 110.23626 * 0.02562 * 22 14 13 24 24 H 0.97003 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46770 * 59.99576 * 9 7 2 26 26 H 1.08999 * 109.46542 * 299.99681 * 9 7 2 27 27 H 1.00907 * 110.99839 * 303.95050 * 10 9 7 28 28 H 1.08997 * 109.47154 * 60.00039 * 11 10 9 29 29 H 1.09005 * 109.46835 * 299.99740 * 11 10 9 30 30 H 1.07994 * 126.97586 * 0.05783 * 13 12 11 31 31 H 1.08003 * 120.01753 * 0.02562 * 16 15 14 32 32 H 1.07994 * 119.98443 * 180.27861 * 17 16 15 33 33 H 1.08000 * 119.97806 * 179.97438 * 20 18 17 34 34 H 1.07994 * 120.02318 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5149 -6.0259 0.0031 13 6 2.9855 -6.6900 1.0849 14 7 3.8707 -7.6071 0.6078 15 6 4.6043 -8.5219 1.3781 16 6 4.4621 -8.5390 2.7588 17 6 5.1807 -9.4441 3.5150 18 6 6.0514 -10.3265 2.8975 19 9 6.7575 -11.2077 3.6393 20 6 6.1987 -10.3069 1.5208 21 6 5.4778 -9.4069 0.7609 22 7 3.9170 -7.4899 -0.6733 23 7 3.1218 -6.5575 -1.0638 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.8411 -3.5489 -0.7792 28 1 0.8815 -4.9816 -0.8894 29 1 0.8795 -4.9813 0.8906 30 1 2.7133 -6.5257 2.1170 31 1 3.7863 -7.8482 3.2410 32 1 5.0671 -9.4607 4.5888 33 1 6.8785 -10.9955 1.0410 34 1 5.5927 -9.3922 -0.3128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862351226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:45 Heat of formation + Delta-G solvation = 64.994469 kcal Electronic energy + Delta-G solvation = -19428.070176 eV Core-core repulsion = 16083.988220 eV Total energy + Delta-G solvation = -3344.081956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.01086 -44.53355 -40.25964 -37.36569 -35.56728 -34.58576 -32.87420 -32.08788 -30.60063 -29.14022 -26.39751 -25.31064 -24.36528 -23.41281 -22.61539 -21.83803 -19.57312 -18.70276 -18.47134 -17.65837 -17.28854 -16.81853 -16.67265 -16.48395 -16.14039 -15.49639 -15.19259 -14.92843 -14.72897 -14.42724 -14.28761 -13.94961 -13.85411 -13.49871 -13.26714 -12.80566 -12.66027 -12.51373 -12.17023 -12.06077 -11.97453 -11.85378 -11.30729 -10.65623 -10.39720 -10.35019 -9.57684 -9.16687 -8.21228 -6.31558 -0.61237 0.01165 0.80906 1.16895 1.33358 1.42816 1.43307 1.57179 2.38816 2.41941 3.07696 3.11895 3.12528 3.39305 3.61964 3.74105 3.77773 3.95211 3.99780 4.13202 4.30097 4.48481 4.59333 4.76225 4.77477 4.88689 4.92175 4.98446 5.11406 5.19107 5.29318 5.44876 5.61878 5.77439 6.01928 6.39609 6.63684 6.86988 7.31141 7.38869 8.90436 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.032863 B = 0.002806 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.830064 B = 9976.685021 C =10319.314394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.208 3.792 10 N -0.681 5.681 11 C 0.145 3.855 12 C -0.017 4.017 13 C -0.015 4.015 14 N -0.242 5.242 15 C 0.089 3.911 16 C -0.081 4.081 17 C -0.124 4.124 18 C 0.101 3.899 19 F -0.136 7.136 20 C -0.129 4.129 21 C -0.081 4.081 22 N -0.105 5.105 23 N -0.289 5.289 24 H 0.266 0.734 25 H -0.036 1.036 26 H 0.015 0.985 27 H 0.331 0.669 28 H 0.033 0.967 29 H 0.103 0.897 30 H 0.235 0.765 31 H 0.170 0.830 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -22.817 9.110 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.080 3.920 10 N -0.312 5.312 11 C 0.014 3.986 12 C -0.154 4.154 13 C -0.164 4.164 14 N -0.029 5.029 15 C -0.001 4.001 16 C -0.102 4.102 17 C -0.143 4.143 18 C 0.081 3.919 19 F -0.115 7.115 20 C -0.148 4.148 21 C -0.101 4.101 22 N -0.082 5.082 23 N -0.156 5.156 24 H 0.074 0.926 25 H -0.019 1.019 26 H 0.033 0.967 27 H 0.147 0.853 28 H 0.051 0.949 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.188 0.812 32 H 0.195 0.805 33 H 0.186 0.814 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.309 -23.225 8.472 27.186 hybrid contribution -0.547 1.109 -0.206 1.254 sum 10.762 -22.116 8.266 25.947 Atomic orbital electron populations 1.70081 1.07629 1.27957 1.51525 1.25893 0.95793 1.03181 0.94624 0.85310 0.78829 0.78492 0.77809 1.18984 1.20443 1.20096 1.21536 0.93684 0.91517 1.50590 0.92148 1.19261 0.90518 0.88230 0.93965 1.60668 1.20300 1.01001 1.49181 1.20124 0.91592 0.84939 1.01981 1.22021 1.02953 1.01056 0.89382 1.24027 0.95713 0.93342 1.03288 1.44765 1.28015 1.24222 1.05907 1.18091 0.97688 0.93391 0.90971 1.21089 1.00126 0.99549 0.89418 1.21303 0.95751 0.94415 1.02798 1.17994 0.93891 0.90534 0.89508 1.91539 1.76654 1.66606 1.76661 1.21242 1.01374 1.00399 0.91831 1.20908 0.94009 0.93361 1.01837 1.78208 1.19722 1.17074 0.93208 1.75004 1.07143 1.05847 1.27619 0.92552 1.01871 0.96696 0.85301 0.94917 0.87850 0.74857 0.81218 0.80546 0.81360 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.44 0.28 -55.53 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -30.63 9.32 25.60 0.24 -30.39 16 8 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.21 11.03 5.44 85.56 0.47 11.49 16 10 N -0.68 -29.79 6.48 -521.97 -3.38 -33.17 16 11 C 0.14 5.15 6.25 85.56 0.53 5.68 16 12 C -0.02 -0.55 6.76 41.60 0.28 -0.27 16 13 C -0.02 -0.38 10.85 83.37 0.90 0.53 16 14 N -0.24 -6.05 3.56 -187.02 -0.67 -6.71 16 15 C 0.09 1.63 6.68 38.06 0.25 1.88 16 16 C -0.08 -0.96 9.45 22.38 0.21 -0.75 16 17 C -0.12 -1.18 10.02 22.30 0.22 -0.96 16 18 C 0.10 1.20 7.30 22.39 0.16 1.37 16 19 F -0.14 -1.83 17.27 44.97 0.78 -1.05 16 20 C -0.13 -1.54 10.02 22.29 0.22 -1.31 16 21 C -0.08 -1.30 9.62 22.38 0.22 -1.09 16 22 N -0.10 -3.32 12.41 37.02 0.46 -2.86 16 23 N -0.29 -10.40 12.39 -48.59 -0.60 -11.00 16 24 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 25 H -0.04 -2.09 8.14 -2.39 -0.02 -2.11 16 26 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.33 14.83 8.71 -89.69 -0.78 14.05 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 30 H 0.24 3.52 7.10 -2.91 -0.02 3.50 16 31 H 0.17 1.20 6.77 -2.91 -0.02 1.18 16 32 H 0.18 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 34 H 0.15 2.48 7.69 -2.91 -0.02 2.46 16 Total: -1.00 -71.01 308.49 3.43 -67.57 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.36 Total: 9.52 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 4.18 Total: -13.16 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -3.91 Total: -109.28 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.01 3.43 -67.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862351226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.569 kcal (2) G-P(sol) polarization free energy of solvation -71.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds